Wall clock time and date at job start Tue Mar 31 2020 21:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99969 * 2 1 4 4 C 1.52995 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47089 * 174.99706 * 4 3 2 6 6 C 1.53007 * 109.46978 * 55.00036 * 4 3 2 7 7 O 1.42896 * 109.46976 * 294.99856 * 4 3 2 8 8 C 1.42901 * 113.99794 * 209.99685 * 7 4 3 9 9 C 1.53006 * 109.47245 * 180.02562 * 8 7 4 10 10 H 1.08997 * 109.46855 * 54.99562 * 9 8 7 11 11 O 1.42898 * 109.46665 * 295.00501 * 9 8 7 12 12 C 1.52997 * 109.47362 * 175.00310 * 9 8 7 13 13 N 1.46901 * 109.47286 * 184.99937 * 12 9 8 14 14 C 1.46898 * 110.99720 * 66.04361 * 13 12 9 15 15 C 1.50699 * 109.47155 * 193.95501 * 14 13 12 16 16 H 1.08004 * 119.99782 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00305 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99866 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99965 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47160 * 89.99975 * 19 17 15 21 21 H 1.48496 * 109.46807 * 209.99838 * 19 17 15 22 22 H 1.48504 * 109.47033 * 329.99696 * 19 17 15 23 23 C 1.46898 * 110.99845 * 190.00038 * 13 12 9 24 24 C 1.50707 * 109.46592 * 170.00327 * 23 13 12 25 25 C 1.38227 * 119.62024 * 94.97729 * 24 23 13 26 26 C 1.38627 * 119.15702 * 179.78495 * 25 24 23 27 27 C 1.38669 * 118.42389 * 0.47826 * 26 25 24 28 28 C 1.38186 * 119.16143 * 359.49762 * 27 26 25 29 29 N 1.31856 * 119.61172 * 274.99481 * 24 23 13 30 30 H 1.09003 * 109.46949 * 60.00953 * 1 2 3 31 31 H 1.09010 * 109.46987 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47486 * 300.00262 * 1 2 3 33 33 H 1.08999 * 109.47250 * 59.99424 * 3 2 1 34 34 H 1.09007 * 109.46739 * 299.99838 * 3 2 1 35 35 H 1.08996 * 109.46575 * 299.99711 * 6 4 3 36 36 H 1.08995 * 109.46886 * 60.00217 * 6 4 3 37 37 H 1.09000 * 109.46879 * 180.02562 * 6 4 3 38 38 H 1.09005 * 109.47252 * 60.00567 * 8 7 4 39 39 H 1.08998 * 109.47856 * 300.00176 * 8 7 4 40 40 H 0.96701 * 114.00395 * 299.99183 * 11 9 8 41 41 H 1.09005 * 109.47217 * 64.99830 * 12 9 8 42 42 H 1.08999 * 109.47008 * 305.00379 * 12 9 8 43 43 H 1.09002 * 109.47442 * 313.95778 * 14 13 12 44 44 H 1.08997 * 109.47281 * 73.95810 * 14 13 12 45 45 H 0.96999 * 120.00005 * 179.97438 * 18 17 15 46 46 H 1.08993 * 109.47549 * 49.99892 * 23 13 12 47 47 H 1.08997 * 109.47171 * 289.99469 * 23 13 12 48 48 H 1.07998 * 120.41916 * 359.97438 * 25 24 23 49 49 H 1.08008 * 120.78688 * 180.22921 * 26 25 24 50 50 H 1.08002 * 120.42244 * 179.78279 * 27 26 25 51 51 H 1.07996 * 119.61757 * 180.25243 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1766 -0.0890 6 6 3.9790 0.3194 -1.1807 7 8 3.9648 0.5797 1.2220 8 6 5.2613 0.9980 1.6533 9 6 5.6161 0.2904 2.9627 10 1 5.5297 -0.7878 2.8279 11 8 4.7200 0.7151 3.9915 12 6 7.0515 0.6414 3.3595 13 7 7.4330 -0.1300 4.5499 14 6 7.4951 -1.5665 4.2487 15 6 7.5472 -2.3479 5.5362 16 1 7.5351 -1.8293 6.4835 17 6 7.6105 -3.7249 5.5049 18 7 7.6248 -4.3564 4.3514 19 14 7.6744 -4.6935 7.1009 20 1 6.2929 -5.0147 7.5406 21 1 8.4308 -5.9530 6.8854 22 1 8.3504 -3.8826 8.1453 23 6 8.7083 0.3480 5.1005 24 6 8.9456 -0.2903 6.4449 25 6 9.7136 -1.4364 6.5310 26 6 9.9295 -2.0130 7.7730 27 6 9.3541 -1.4185 8.8858 28 6 8.5986 -0.2731 8.7222 29 7 8.4180 0.2508 7.5254 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8463 -0.8901 35 1 3.5359 -0.6724 -1.0910 36 1 3.6514 0.7809 -2.1122 37 1 5.0655 0.2330 -1.1800 38 1 5.2613 2.0766 1.8113 39 1 5.9978 0.7424 0.8915 40 1 4.7435 1.6660 4.1658 41 1 7.1171 1.7068 3.5805 42 1 7.7252 0.3987 2.5378 43 1 6.6103 -1.8576 3.6826 44 1 8.3882 -1.7761 3.6601 45 1 7.6696 -5.3251 4.3293 46 1 8.6717 1.4314 5.2141 47 1 9.5194 0.0809 4.4233 48 1 10.1425 -1.8752 5.6423 49 1 10.5284 -2.9065 7.8711 50 1 9.4984 -1.8426 9.8685 51 1 8.1505 0.1984 9.5843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278077842.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:49 Heat of formation + Delta-G solvation = -84.836660 kcal Electronic energy + Delta-G solvation = -30394.134465 eV Core-core repulsion = 26294.804891 eV Total energy + Delta-G solvation = -4099.329574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.59837 -38.96433 -37.87517 -36.82979 -35.40625 -32.63647 -32.13030 -31.62976 -31.14879 -29.36202 -27.53220 -27.46365 -26.06621 -25.62469 -23.62052 -22.62225 -22.35079 -21.34021 -20.84321 -19.90048 -17.29626 -16.73677 -16.31718 -16.23549 -16.08772 -15.87907 -15.48094 -15.44062 -15.08238 -14.82454 -14.64691 -14.39407 -14.06160 -13.69764 -13.35852 -13.19866 -12.91358 -12.70606 -12.50910 -12.42706 -12.41383 -12.06091 -11.92602 -11.83948 -11.77776 -11.32030 -11.20487 -11.12998 -10.94147 -10.82312 -10.66017 -10.56302 -10.22838 -9.77844 -9.70259 -9.56052 -9.45400 -9.28178 -8.79719 -8.59217 -8.48417 -7.76239 -7.26965 -6.04225 -3.95724 1.97619 2.20668 3.32010 3.40280 3.45381 3.56514 3.68530 4.39693 4.53003 4.71198 4.82210 4.95067 4.98252 5.08150 5.10007 5.15199 5.23641 5.24917 5.27930 5.34468 5.43305 5.43821 5.53730 5.55089 5.56915 5.57482 5.65265 5.68515 5.77519 5.84599 5.85566 5.96047 5.98237 6.11113 6.22541 6.26105 6.46949 6.54308 6.59018 6.96108 7.02318 7.04898 7.17142 7.24183 7.35615 7.55803 7.81771 8.05934 8.12358 8.25454 8.51288 8.89913 9.04391 9.59886 11.05763 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.002815 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.451140 B = 9942.703451 C =10817.567896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.066 3.934 4 C 0.086 3.914 5 H 0.069 0.931 6 C -0.171 4.171 7 O -0.357 6.357 8 C 0.031 3.969 9 C 0.116 3.884 10 H 0.114 0.886 11 O -0.532 6.532 12 C 0.032 3.968 13 N -0.517 5.517 14 C 0.185 3.815 15 C -0.489 4.489 16 H 0.075 0.925 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.873 3.127 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.252 1.252 23 C 0.119 3.881 24 C 0.160 3.840 25 C -0.085 4.085 26 C -0.102 4.102 27 C -0.176 4.176 28 C 0.066 3.934 29 N -0.475 5.475 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.360 0.640 41 H 0.066 0.934 42 H 0.032 0.968 43 H 0.036 0.964 44 H -0.009 1.009 45 H 0.260 0.740 46 H 0.071 0.929 47 H 0.036 0.964 48 H 0.127 0.873 49 H 0.117 0.883 50 H 0.116 0.884 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 12.976 -7.080 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C -0.011 4.011 4 C 0.028 3.972 5 H 0.087 0.913 6 C -0.229 4.229 7 O -0.276 6.276 8 C -0.047 4.047 9 C 0.056 3.944 10 H 0.132 0.868 11 O -0.334 6.334 12 C -0.097 4.097 13 N -0.242 5.242 14 C 0.061 3.939 15 C -0.528 4.528 16 H 0.093 0.907 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.700 3.300 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.176 1.176 23 C -0.010 4.010 24 C 0.020 3.980 25 C -0.106 4.106 26 C -0.127 4.127 27 C -0.196 4.196 28 C -0.089 4.089 29 N -0.185 5.185 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.205 0.795 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.009 0.991 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.054 0.946 48 H 0.144 0.856 49 H 0.135 0.865 50 H 0.134 0.866 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.439 12.672 -6.754 15.030 hybrid contribution 1.075 -0.880 -0.003 1.389 sum -3.365 11.792 -6.757 14.001 Atomic orbital electron populations 1.22737 0.81439 1.02826 0.99568 1.88002 1.19173 1.26943 1.95248 1.22626 0.92615 0.85579 1.00300 1.22135 0.92840 0.96128 0.86129 0.91324 1.22188 1.01499 1.02221 0.96979 1.88153 1.33044 1.67662 1.38723 1.23372 0.85524 0.97948 0.97849 1.21959 0.87897 1.00908 0.83656 0.86817 1.86753 1.62652 1.27333 1.56708 1.22574 0.95714 0.98200 0.93232 1.61997 1.28533 1.06370 1.27310 1.19919 0.96203 0.80754 0.97062 1.21476 1.47410 0.90622 0.93256 0.90718 1.24890 0.95690 0.97682 0.95938 1.69955 1.50464 1.08509 1.24349 0.86878 0.78502 0.79618 0.84980 1.20912 1.21606 1.17557 1.20701 0.91277 0.98061 0.90956 1.20591 0.91536 0.92463 0.93399 1.21654 0.97043 0.94409 0.97470 1.21199 0.99838 0.98870 0.92838 1.21818 1.00758 0.98038 0.98997 1.22298 0.97576 0.94254 0.94801 1.67322 1.19136 1.33637 0.98424 0.94515 0.89611 0.94071 0.92607 0.92439 0.90621 0.92185 0.92510 0.93511 0.92802 0.79510 0.91572 0.95004 0.94580 0.99102 0.92985 0.91074 0.94588 0.85550 0.86522 0.86610 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.97 9.79 -40.09 -0.39 -5.37 16 3 C 0.07 0.71 5.81 37.16 0.22 0.93 16 4 C 0.09 1.00 3.13 -26.73 -0.08 0.91 16 5 H 0.07 0.63 7.79 -51.92 -0.40 0.23 16 6 C -0.17 -1.91 9.33 37.16 0.35 -1.56 16 7 O -0.36 -5.55 9.92 -49.81 -0.49 -6.04 16 8 C 0.03 0.42 5.38 37.16 0.20 0.62 16 9 C 0.12 2.01 3.23 -26.73 -0.09 1.92 16 10 H 0.11 2.43 6.12 -51.93 -0.32 2.11 16 11 O -0.53 -9.90 13.25 -40.09 -0.53 -10.43 16 12 C 0.03 0.53 4.59 -3.83 -0.02 0.52 16 13 N -0.52 -10.86 4.51 -237.52 -1.07 -11.93 16 14 C 0.19 4.64 4.55 -4.98 -0.02 4.61 16 15 C -0.49 -13.16 5.77 -34.44 -0.20 -13.36 16 16 H 0.07 2.06 4.93 -52.48 -0.26 1.80 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 19 Si 0.87 21.30 28.79 -169.99 -4.89 16.40 16 20 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.25 -5.73 5.26 56.52 0.30 -5.43 16 23 C 0.12 2.26 5.28 -4.97 -0.03 2.24 16 24 C 0.16 3.31 4.01 -82.58 -0.33 2.98 16 25 C -0.09 -1.74 6.30 -39.44 -0.25 -1.99 16 26 C -0.10 -1.94 7.80 -39.28 -0.31 -2.25 16 27 C -0.18 -3.15 9.87 -39.44 -0.39 -3.54 16 28 C 0.07 1.22 11.18 -17.55 -0.20 1.02 16 29 N -0.48 -9.83 10.16 -9.47 -0.10 -9.93 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 35 H 0.07 1.00 7.56 -51.93 -0.39 0.61 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 38 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 39 H 0.05 0.68 7.87 -51.93 -0.41 0.27 16 40 H 0.36 5.06 9.05 45.56 0.41 5.47 16 41 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 42 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 43 H 0.04 0.99 5.91 -51.93 -0.31 0.69 16 44 H -0.01 -0.23 7.99 -51.93 -0.41 -0.64 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 47 H 0.04 0.65 7.91 -51.93 -0.41 0.24 16 48 H 0.13 2.61 7.98 -52.49 -0.42 2.19 16 49 H 0.12 2.03 8.06 -52.48 -0.42 1.60 16 50 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 51 H 0.14 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -33.73 406.25 -8.79 -42.52 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -8.04 Total: 7.86 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -0.13 Total: -3.97 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.43 Total: -47.10 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -1.42 Total: -21.84 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.89 Total: 16.40 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.73 -8.79 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278077842.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.318 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds