Wall clock time and date at job start Tue Mar 31 2020 21:41:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30996 * 1
3 3 C 1.50706 * 119.99810 * 2 1
4 4 N 1.46907 * 109.46806 * 125.62793 * 3 2 1
5 5 C 1.46890 * 110.99859 * 286.51512 * 4 3 2
6 6 C 1.50705 * 109.47425 * 72.96482 * 5 4 3
7 7 H 1.07997 * 119.99531 * 4.37085 * 6 5 4
8 8 C 1.37880 * 120.00228 * 184.37668 * 6 5 4
9 9 N 1.31509 * 119.99958 * 359.97438 * 8 6 5
10 10 Si 1.86799 * 119.99871 * 179.97438 * 8 6 5
11 11 H 1.48497 * 109.47132 * 359.97438 * 10 8 6
12 12 H 1.48496 * 109.46947 * 120.00027 * 10 8 6
13 13 H 1.48495 * 109.46914 * 239.99917 * 10 8 6
14 14 C 1.46897 * 110.99591 * 162.56072 * 4 3 2
15 15 H 1.09008 * 109.46598 * 170.11931 * 14 4 3
16 16 C 1.52997 * 109.47078 * 50.11933 * 14 4 3
17 17 C 1.50701 * 109.47374 * 290.11631 * 14 4 3
18 18 O 1.21280 * 119.99808 * 12.01845 * 17 14 4
19 19 N 1.34776 * 119.99830 * 192.01661 * 17 14 4
20 20 C 1.46923 * 120.63280 * 4.06727 * 19 17 14
21 21 C 1.53624 * 108.54600 * 126.37089 * 20 19 17
22 22 C 1.53036 * 109.24144 * 54.85212 * 21 20 19
23 23 C 1.50701 * 109.44880 * 178.49698 * 22 21 20
24 24 O 1.20832 * 119.99907 * 120.06164 * 23 22 21
25 25 O 1.34224 * 120.00290 * 300.06755 * 23 22 21
26 26 C 1.45196 * 117.00214 * 179.97438 * 25 23 22
27 27 C 1.53041 * 109.54091 * 298.51326 * 22 21 20
28 28 C 1.46930 * 120.62756 * 184.34705 * 19 17 14
29 29 H 1.07996 * 120.00145 * 179.97438 * 1 2 3
30 30 H 1.08001 * 120.00311 * 359.97438 * 1 2 3
31 31 H 1.08001 * 120.00311 * 180.02562 * 2 1 3
32 32 H 1.09001 * 109.47171 * 5.62792 * 3 2 1
33 33 H 1.08996 * 109.47260 * 245.62415 * 3 2 1
34 34 H 1.09002 * 109.47337 * 192.96239 * 5 4 3
35 35 H 1.09007 * 109.47571 * 312.96044 * 5 4 3
36 36 H 0.96998 * 120.00401 * 180.02562 * 9 8 6
37 37 H 1.09003 * 109.47357 * 54.30423 * 16 14 4
38 38 H 1.09002 * 109.47237 * 174.30037 * 16 14 4
39 39 H 1.08992 * 109.47224 * 294.29981 * 16 14 4
40 40 H 1.09002 * 109.58487 * 246.20092 * 20 19 17
41 41 H 1.09000 * 109.59065 * 6.62421 * 20 19 17
42 42 H 1.09000 * 109.63003 * 294.86135 * 21 20 19
43 43 H 1.08999 * 109.43210 * 174.72540 * 21 20 19
44 44 H 1.08998 * 109.46006 * 58.53858 * 22 21 20
45 45 H 1.09007 * 109.47062 * 299.99297 * 26 25 23
46 46 H 1.08997 * 109.47655 * 59.99257 * 26 25 23
47 47 H 1.08999 * 109.47296 * 180.02562 * 26 25 23
48 48 H 1.08992 * 109.49908 * 301.41311 * 27 22 21
49 49 H 1.08997 * 109.49607 * 181.31319 * 27 22 21
50 50 H 1.08996 * 109.58899 * 353.37120 * 28 19 17
51 51 H 1.09003 * 109.58699 * 113.65778 * 28 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3052 0.0000
4 7 3.0070 1.3258 1.1258
5 6 2.3013 1.5114 2.4007
6 6 1.5737 0.2419 2.7616
7 1 1.6866 -0.6386 2.1466
8 6 0.7639 0.2047 3.8769
9 7 0.6268 1.2768 4.6260
10 14 -0.1385 -1.3687 4.3238
11 1 0.1810 -2.4225 3.3275
12 1 0.2877 -1.8173 5.6737
13 1 -1.6019 -1.1166 4.3250
14 6 4.0311 2.3615 0.9353
15 1 4.6076 2.4756 1.8534
16 6 3.3551 3.6897 0.5892
17 6 4.9507 1.9581 -0.1884
18 8 4.6527 1.0325 -0.9132
19 7 6.1042 2.6259 -0.3879
20 6 6.5220 3.6907 0.5343
21 6 7.9447 3.3820 1.0248
22 6 8.8663 3.2000 -0.1833
23 6 10.2710 2.9334 0.2928
24 8 10.8262 1.9036 -0.0096
25 8 10.9055 3.8398 1.0527
26 6 12.2563 3.5160 1.4755
27 6 8.3800 2.0176 -1.0246
28 6 6.9650 2.3071 -1.5352
29 1 -0.5400 -0.9353 -0.0004
30 1 -0.5401 0.9353 0.0004
31 1 1.8500 -0.9353 -0.0004
32 1 1.3594 2.1312 0.1008
33 1 2.6124 1.4078 -0.9360
34 1 3.0213 1.7523 3.1828
35 1 1.5839 2.3263 2.3037
36 1 0.0574 1.2506 5.4108
37 1 2.6159 3.9311 1.3531
38 1 4.1054 4.4793 0.5474
39 1 2.8624 3.6051 -0.3793
40 1 6.5115 4.6489 0.0148
41 1 5.8405 3.7261 1.3843
42 1 7.9372 2.4674 1.6177
43 1 8.3051 4.2094 1.6360
44 1 8.8541 4.1061 -0.7891
45 1 12.2428 2.5985 2.0639
46 1 12.8878 3.3757 0.5983
47 1 12.6522 4.3303 2.0822
48 1 8.3685 1.1159 -0.4124
49 1 9.0502 1.8741 -1.8720
50 1 6.5760 1.4293 -2.0511
51 1 6.9879 3.1539 -2.2212
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000292151034.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:41:50
Heat of formation + Delta-G solvation = -85.304341 kcal
Electronic energy + Delta-G solvation = -30762.119835 eV
Core-core repulsion = 26662.769981 eV
Total energy + Delta-G solvation = -4099.349854 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.08373 -40.14298 -37.95866 -36.83658 -36.40927 -33.61334 -32.79274 -32.55236
-31.42624 -29.57804 -28.39641 -26.90199 -26.30995 -24.98520 -23.89697 -23.25697
-22.14925 -20.96235 -20.11412 -19.01436 -18.62059 -17.95023 -17.30409 -16.89098
-16.47760 -16.25713 -15.64075 -15.33003 -14.73503 -14.59710 -14.25414 -14.23805
-14.14909 -14.06285 -13.84689 -13.51060 -13.18987 -12.94578 -12.77804 -12.63027
-12.41356 -12.17330 -12.11060 -11.92898 -11.88579 -11.52202 -11.26496 -11.18129
-11.10953 -11.03053 -10.95003 -10.83723 -10.63447 -10.59336 -10.44269 -10.16599
-9.91232 -9.44517 -9.00079 -8.65932 -8.43877 -8.03430 -7.26133 -5.96269
-3.93070 1.87409 2.35426 2.90176 3.00063 3.31625 3.38753 3.43672
3.49448 4.17496 4.32165 4.41822 4.49143 4.67850 4.74985 4.77056
4.83443 4.89903 4.98739 5.01333 5.13735 5.17749 5.26376 5.33759
5.40117 5.41920 5.45260 5.52727 5.57043 5.74466 5.77142 5.82474
5.97331 5.99419 6.03568 6.06934 6.08961 6.35142 6.36766 6.50741
6.58248 6.83092 7.18445 7.32648 7.41338 7.44285 7.59582 7.76306
7.89411 8.10859 8.23250 8.45975 8.58382 9.13655 9.69178 11.14960
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.015984 B = 0.002660 C = 0.002486
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1751.316524 B =10522.678611 C =11261.963134
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.090 4.090
3 C 0.093 3.907
4 N -0.514 5.514
5 C 0.194 3.806
6 C -0.489 4.489
7 H 0.071 0.929
8 C 0.054 3.946
9 N -0.904 5.904
10 Si 0.892 3.108
11 H -0.272 1.272
12 H -0.286 1.286
13 H -0.286 1.286
14 C 0.065 3.935
15 H 0.099 0.901
16 C -0.180 4.180
17 C 0.527 3.473
18 O -0.516 6.516
19 N -0.623 5.623
20 C 0.109 3.891
21 C -0.129 4.129
22 C -0.077 4.077
23 C 0.465 3.535
24 O -0.505 6.505
25 O -0.358 6.358
26 C 0.034 3.966
27 C -0.119 4.119
28 C 0.115 3.885
29 H 0.084 0.916
30 H 0.084 0.916
31 H 0.101 0.899
32 H 0.025 0.975
33 H 0.076 0.924
34 H 0.024 0.976
35 H -0.001 1.001
36 H 0.258 0.742
37 H 0.074 0.926
38 H 0.057 0.943
39 H 0.059 0.941
40 H 0.073 0.927
41 H 0.098 0.902
42 H 0.077 0.923
43 H 0.090 0.910
44 H 0.111 0.889
45 H 0.063 0.937
46 H 0.062 0.938
47 H 0.101 0.899
48 H 0.079 0.921
49 H 0.082 0.918
50 H 0.099 0.901
51 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.410 10.768 -9.594 23.387
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.250 4.250
2 C -0.108 4.108
3 C -0.034 4.034
4 N -0.238 5.238
5 C 0.070 3.930
6 C -0.528 4.528
7 H 0.089 0.911
8 C -0.146 4.146
9 N -0.545 5.545
10 Si 0.720 3.280
11 H -0.196 1.196
12 H -0.213 1.213
13 H -0.212 1.212
14 C -0.048 4.048
15 H 0.117 0.883
16 C -0.239 4.239
17 C 0.315 3.685
18 O -0.390 6.390
19 N -0.359 5.359
20 C -0.014 4.014
21 C -0.167 4.167
22 C -0.096 4.096
23 C 0.307 3.693
24 O -0.392 6.392
25 O -0.275 6.275
26 C -0.059 4.059
27 C -0.157 4.157
28 C -0.008 4.008
29 H 0.102 0.898
30 H 0.102 0.898
31 H 0.119 0.881
32 H 0.044 0.956
33 H 0.094 0.906
34 H 0.042 0.958
35 H 0.017 0.983
36 H 0.068 0.932
37 H 0.093 0.907
38 H 0.076 0.924
39 H 0.078 0.922
40 H 0.091 0.909
41 H 0.116 0.884
42 H 0.096 0.904
43 H 0.108 0.892
44 H 0.129 0.871
45 H 0.082 0.918
46 H 0.080 0.920
47 H 0.120 0.880
48 H 0.097 0.903
49 H 0.101 0.899
50 H 0.117 0.883
51 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 18.572 9.526 -9.880 23.093
hybrid contribution -0.564 -0.040 0.664 0.872
sum 18.007 9.486 -9.216 22.342
Atomic orbital electron populations
1.23345 0.95891 1.00261 1.05476 1.22442 0.94976 0.97985 0.95428
1.21151 0.93354 0.94625 0.94268 1.62034 1.14478 1.42935 1.04372
1.19834 0.92290 0.97142 0.83748 1.21265 1.25144 0.97393 1.08957
0.91104 1.24905 0.96960 0.96221 0.96476 1.69955 1.39784 1.28089
1.16638 0.86519 0.79409 0.83862 0.78180 1.19622 1.21279 1.21231
1.21645 0.94892 0.91735 0.96553 0.88307 1.22449 1.01714 0.96745
1.02964 1.20931 0.80741 0.81249 0.85597 1.90640 1.73220 1.27642
1.47502 1.48201 1.22146 1.37814 1.27771 1.21880 0.95075 0.90389
0.94097 1.22050 0.94464 1.04068 0.96138 1.21110 0.87492 1.02147
0.98892 1.23867 0.88997 0.81266 0.75153 1.90683 1.67653 1.26713
1.54103 1.86505 1.30154 1.47361 1.63480 1.23276 0.79707 1.02629
1.00311 1.21858 0.96460 0.97196 1.00183 1.21508 0.88648 1.02387
0.88261 0.89794 0.89786 0.88095 0.95642 0.90570 0.95811 0.98326
0.93227 0.90701 0.92388 0.92198 0.90902 0.88412 0.90405 0.89155
0.87098 0.91820 0.91958 0.88026 0.90260 0.89923 0.88288 0.91569
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -4.28 13.97 29.02 0.41 -3.88 16
2 C -0.09 -1.91 6.65 -36.02 -0.24 -2.15 16
3 C 0.09 1.92 3.69 -4.97 -0.02 1.90 16
4 N -0.51 -11.04 4.19 -230.90 -0.97 -12.01 16
5 C 0.19 4.87 4.26 -4.98 -0.02 4.85 16
6 C -0.49 -13.49 7.63 -34.44 -0.26 -13.76 16
7 H 0.07 1.99 5.93 -52.49 -0.31 1.68 16
8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16
9 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16
10 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16
11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16
12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
14 C 0.06 1.08 1.85 -68.87 -0.13 0.96 16
15 H 0.10 1.59 6.45 -51.92 -0.34 1.25 16
16 C -0.18 -2.57 8.07 37.16 0.30 -2.27 16
17 C 0.53 8.45 6.74 -10.99 -0.07 8.37 16
18 O -0.52 -10.11 13.73 5.56 0.08 -10.03 16
19 N -0.62 -7.31 2.97 -172.50 -0.51 -7.82 16
20 C 0.11 0.93 5.32 -3.49 -0.02 0.91 16
21 C -0.13 -1.02 5.31 -26.39 -0.14 -1.16 16
22 C -0.08 -0.62 2.59 -91.73 -0.24 -0.85 16
23 C 0.46 4.62 7.26 36.01 0.26 4.88 16
24 O -0.50 -6.52 15.73 -18.75 -0.29 -6.82 16
25 O -0.36 -3.12 10.44 -39.24 -0.41 -3.53 16
26 C 0.03 0.22 10.56 101.05 1.07 1.29 16
27 C -0.12 -1.11 4.65 -26.61 -0.12 -1.24 16
28 C 0.11 1.16 6.44 -3.71 -0.02 1.14 16
29 H 0.08 1.59 8.06 -52.49 -0.42 1.16 16
30 H 0.08 1.66 7.84 -52.49 -0.41 1.24 16
31 H 0.10 2.21 7.94 -52.49 -0.42 1.80 16
32 H 0.03 0.53 6.78 -51.93 -0.35 0.17 16
33 H 0.08 1.52 5.72 -51.93 -0.30 1.23 16
34 H 0.02 0.63 7.73 -51.93 -0.40 0.22 16
35 H 0.00 -0.03 7.08 -51.93 -0.37 -0.40 16
36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16
37 H 0.07 1.20 7.03 -51.93 -0.37 0.83 16
38 H 0.06 0.63 6.53 -51.93 -0.34 0.29 16
39 H 0.06 0.88 6.98 -51.93 -0.36 0.51 16
40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
41 H 0.10 0.87 5.04 -51.93 -0.26 0.61 16
42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16
43 H 0.09 0.57 8.08 -51.93 -0.42 0.15 16
44 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16
45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
46 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16
47 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16
48 H 0.08 0.93 8.13 -51.93 -0.42 0.51 16
49 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16
50 H 0.10 1.20 7.00 -51.93 -0.36 0.84 16
51 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16
LS Contribution 397.33 15.07 5.99 5.99
Total: -1.00 -34.03 397.33 -8.12 -42.15
By element:
Atomic # 1 Polarization: 8.76 SS G_CDS: -8.36 Total: 0.40 kcal
Atomic # 6 Polarization: -0.22 SS G_CDS: 0.65 Total: 0.43 kcal
Atomic # 7 Polarization: -44.85 SS G_CDS: -0.74 Total: -45.60 kcal
Atomic # 8 Polarization: -19.76 SS G_CDS: -0.63 Total: -20.39 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -34.03 -8.12 -42.15 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000292151034.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.156 kcal
(2) G-P(sol) polarization free energy of solvation -34.030 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.185 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.304 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds