Wall clock time and date at job start Tue Mar 31 2020 21:41:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30996 * 1
3 3 C 1.50706 * 119.99810 * 2 1
4 4 N 1.46907 * 109.46806 * 125.62793 * 3 2 1
5 5 C 1.46890 * 110.99859 * 286.51512 * 4 3 2
6 6 C 1.50705 * 109.47425 * 72.96482 * 5 4 3
7 7 H 1.07997 * 119.99531 * 4.37085 * 6 5 4
8 8 C 1.37880 * 120.00228 * 184.37668 * 6 5 4
9 9 N 1.31509 * 119.99958 * 359.97438 * 8 6 5
10 10 Si 1.86799 * 119.99871 * 179.97438 * 8 6 5
11 11 H 1.48497 * 109.47132 * 359.97438 * 10 8 6
12 12 H 1.48496 * 109.46947 * 120.00027 * 10 8 6
13 13 H 1.48495 * 109.46914 * 239.99917 * 10 8 6
14 14 C 1.46897 * 110.99591 * 162.56072 * 4 3 2
15 15 H 1.09008 * 109.46598 * 170.11931 * 14 4 3
16 16 C 1.52997 * 109.47078 * 50.11933 * 14 4 3
17 17 C 1.50701 * 109.47374 * 290.11631 * 14 4 3
18 18 O 1.21280 * 119.99808 * 12.01845 * 17 14 4
19 19 N 1.34776 * 119.99830 * 192.01661 * 17 14 4
20 20 C 1.46923 * 120.63280 * 4.06727 * 19 17 14
21 21 C 1.53624 * 108.54600 * 126.37089 * 20 19 17
22 22 C 1.53036 * 109.24144 * 54.85212 * 21 20 19
23 23 C 1.50701 * 109.44880 * 178.49698 * 22 21 20
24 24 O 1.20832 * 119.99907 * 120.06164 * 23 22 21
25 25 O 1.34224 * 120.00290 * 300.06755 * 23 22 21
26 26 C 1.45196 * 117.00214 * 179.97438 * 25 23 22
27 27 C 1.53041 * 109.54091 * 298.51326 * 22 21 20
28 28 C 1.46930 * 120.62756 * 184.34705 * 19 17 14
29 29 H 1.07996 * 120.00145 * 179.97438 * 1 2 3
30 30 H 1.08001 * 120.00311 * 359.97438 * 1 2 3
31 31 H 1.08001 * 120.00311 * 180.02562 * 2 1 3
32 32 H 1.09001 * 109.47171 * 5.62792 * 3 2 1
33 33 H 1.08996 * 109.47260 * 245.62415 * 3 2 1
34 34 H 1.09002 * 109.47337 * 192.96239 * 5 4 3
35 35 H 1.09007 * 109.47571 * 312.96044 * 5 4 3
36 36 H 0.96998 * 120.00401 * 180.02562 * 9 8 6
37 37 H 1.09003 * 109.47357 * 54.30423 * 16 14 4
38 38 H 1.09002 * 109.47237 * 174.30037 * 16 14 4
39 39 H 1.08992 * 109.47224 * 294.29981 * 16 14 4
40 40 H 1.09002 * 109.58487 * 246.20092 * 20 19 17
41 41 H 1.09000 * 109.59065 * 6.62421 * 20 19 17
42 42 H 1.09000 * 109.63003 * 294.86135 * 21 20 19
43 43 H 1.08999 * 109.43210 * 174.72540 * 21 20 19
44 44 H 1.08998 * 109.46006 * 58.53858 * 22 21 20
45 45 H 1.09007 * 109.47062 * 299.99297 * 26 25 23
46 46 H 1.08997 * 109.47655 * 59.99257 * 26 25 23
47 47 H 1.08999 * 109.47296 * 180.02562 * 26 25 23
48 48 H 1.08992 * 109.49908 * 301.41311 * 27 22 21
49 49 H 1.08997 * 109.49607 * 181.31319 * 27 22 21
50 50 H 1.08996 * 109.58899 * 353.37120 * 28 19 17
51 51 H 1.09003 * 109.58699 * 113.65778 * 28 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3052 0.0000
4 7 3.0070 1.3258 1.1258
5 6 2.3013 1.5114 2.4007
6 6 1.5737 0.2419 2.7616
7 1 1.6866 -0.6386 2.1466
8 6 0.7639 0.2047 3.8769
9 7 0.6268 1.2768 4.6260
10 14 -0.1385 -1.3687 4.3238
11 1 0.1810 -2.4225 3.3275
12 1 0.2877 -1.8173 5.6737
13 1 -1.6019 -1.1166 4.3250
14 6 4.0311 2.3615 0.9353
15 1 4.6076 2.4756 1.8534
16 6 3.3551 3.6897 0.5892
17 6 4.9507 1.9581 -0.1884
18 8 4.6527 1.0325 -0.9132
19 7 6.1042 2.6259 -0.3879
20 6 6.5220 3.6907 0.5343
21 6 7.9447 3.3820 1.0248
22 6 8.8663 3.2000 -0.1833
23 6 10.2710 2.9334 0.2928
24 8 10.8262 1.9036 -0.0096
25 8 10.9055 3.8398 1.0527
26 6 12.2563 3.5160 1.4755
27 6 8.3800 2.0176 -1.0246
28 6 6.9650 2.3071 -1.5352
29 1 -0.5400 -0.9353 -0.0004
30 1 -0.5401 0.9353 0.0004
31 1 1.8500 -0.9353 -0.0004
32 1 1.3594 2.1312 0.1008
33 1 2.6124 1.4078 -0.9360
34 1 3.0213 1.7523 3.1828
35 1 1.5839 2.3263 2.3037
36 1 0.0574 1.2506 5.4108
37 1 2.6159 3.9311 1.3531
38 1 4.1054 4.4793 0.5474
39 1 2.8624 3.6051 -0.3793
40 1 6.5115 4.6489 0.0148
41 1 5.8405 3.7261 1.3843
42 1 7.9372 2.4674 1.6177
43 1 8.3051 4.2094 1.6360
44 1 8.8541 4.1061 -0.7891
45 1 12.2428 2.5985 2.0639
46 1 12.8878 3.3757 0.5983
47 1 12.6522 4.3303 2.0822
48 1 8.3685 1.1159 -0.4124
49 1 9.0502 1.8741 -1.8720
50 1 6.5760 1.4293 -2.0511
51 1 6.9879 3.1539 -2.2212
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000292151034.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:41:49
Heat of formation + Delta-G solvation = -107.165889 kcal
Electronic energy + Delta-G solvation = -30763.067823 eV
Core-core repulsion = 26662.769981 eV
Total energy + Delta-G solvation = -4100.297842 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.90718 -41.24532 -39.11401 -37.96971 -37.42846 -34.93172 -34.60029 -33.99538
-32.33671 -31.04021 -29.06180 -28.76083 -27.19473 -26.46852 -25.23300 -24.26207
-23.25722 -22.21030 -21.13631 -20.53106 -19.84472 -18.78773 -18.53078 -18.08967
-17.60238 -17.24891 -16.92041 -16.58304 -16.37971 -15.88622 -15.68999 -15.51634
-15.13127 -15.07995 -14.75173 -14.58371 -14.37677 -14.17539 -14.05260 -13.82243
-13.69397 -13.33445 -13.20573 -13.08681 -12.99886 -12.79270 -12.77133 -12.49808
-12.45809 -12.27633 -12.15687 -12.06559 -11.88568 -11.79434 -11.70673 -11.61113
-11.42120 -11.30628 -10.57845 -10.48065 -9.79041 -9.61988 -8.96022 -8.11802
-6.14661 1.12281 1.39004 1.41611 1.53769 1.61778 1.69371 1.76935
1.99510 2.45596 3.22052 3.37237 3.45062 3.64524 3.65529 3.77569
4.02770 4.08146 4.11058 4.20718 4.31417 4.31513 4.32564 4.33169
4.37767 4.42847 4.61112 4.65502 4.70137 4.72772 4.74770 4.80188
4.80325 4.85094 4.89403 4.98211 5.07847 5.14089 5.16224 5.24192
5.25290 5.37811 5.38031 5.62504 5.77334 5.91980 6.06287 6.14206
6.36393 6.44088 6.68610 6.69061 6.98012 7.28170 7.51426 8.99005
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.015984 B = 0.002660 C = 0.002486
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1751.316524 B =10522.678611 C =11261.963134
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.110 4.110
3 C 0.104 3.896
4 N -0.531 5.531
5 C 0.214 3.786
6 C -0.497 4.497
7 H 0.063 0.937
8 C 0.008 3.992
9 N -0.934 5.934
10 Si 0.949 3.051
11 H -0.269 1.269
12 H -0.282 1.282
13 H -0.280 1.280
14 C 0.059 3.941
15 H 0.104 0.896
16 C -0.168 4.168
17 C 0.526 3.474
18 O -0.562 6.562
19 N -0.613 5.613
20 C 0.102 3.898
21 C -0.123 4.123
22 C -0.072 4.072
23 C 0.465 3.535
24 O -0.543 6.543
25 O -0.357 6.357
26 C 0.027 3.973
27 C -0.112 4.112
28 C 0.116 3.884
29 H 0.097 0.903
30 H 0.088 0.912
31 H 0.089 0.911
32 H 0.022 0.978
33 H 0.082 0.918
34 H 0.006 0.994
35 H -0.023 1.023
36 H 0.260 0.740
37 H 0.054 0.946
38 H 0.100 0.900
39 H 0.056 0.944
40 H 0.113 0.887
41 H 0.095 0.905
42 H 0.052 0.948
43 H 0.115 0.885
44 H 0.148 0.852
45 H 0.055 0.945
46 H 0.062 0.938
47 H 0.132 0.868
48 H 0.046 0.954
49 H 0.091 0.909
50 H 0.074 0.926
51 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.364 12.736 -10.117 25.289
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C -0.129 4.129
3 C -0.023 4.023
4 N -0.255 5.255
5 C 0.089 3.911
6 C -0.535 4.535
7 H 0.081 0.919
8 C -0.189 4.189
9 N -0.576 5.576
10 Si 0.775 3.225
11 H -0.194 1.194
12 H -0.208 1.208
13 H -0.206 1.206
14 C -0.053 4.053
15 H 0.122 0.878
16 C -0.227 4.227
17 C 0.315 3.685
18 O -0.439 6.439
19 N -0.347 5.347
20 C -0.020 4.020
21 C -0.161 4.161
22 C -0.090 4.090
23 C 0.310 3.690
24 O -0.432 6.432
25 O -0.273 6.273
26 C -0.066 4.066
27 C -0.150 4.150
28 C -0.006 4.006
29 H 0.115 0.885
30 H 0.107 0.893
31 H 0.107 0.893
32 H 0.040 0.960
33 H 0.100 0.900
34 H 0.024 0.976
35 H -0.005 1.005
36 H 0.069 0.931
37 H 0.073 0.927
38 H 0.118 0.882
39 H 0.075 0.925
40 H 0.131 0.869
41 H 0.113 0.887
42 H 0.071 0.929
43 H 0.134 0.866
44 H 0.165 0.835
45 H 0.074 0.926
46 H 0.081 0.919
47 H 0.150 0.850
48 H 0.065 0.935
49 H 0.109 0.891
50 H 0.092 0.908
51 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 19.572 11.543 -10.399 24.989
hybrid contribution -0.725 -0.609 0.826 1.257
sum 18.847 10.934 -9.573 23.799
Atomic orbital electron populations
1.23509 0.95586 1.01124 1.03913 1.22517 0.95549 0.97956 0.96865
1.21043 0.93104 0.94076 0.94098 1.61853 1.14871 1.45614 1.03172
1.19431 0.91294 0.95305 0.85111 1.21508 1.25240 0.97986 1.08801
0.91931 1.25617 0.97837 0.98958 0.96519 1.70048 1.40606 1.29783
1.17127 0.85627 0.78414 0.80508 0.77928 1.19385 1.20783 1.20604
1.21746 0.94106 0.91867 0.97553 0.87811 1.22328 1.02085 0.96383
1.01857 1.20696 0.81848 0.81118 0.84876 1.90623 1.74627 1.29695
1.48986 1.48209 1.20662 1.37479 1.28387 1.22211 0.95095 0.90777
0.93895 1.22009 0.94104 1.03913 0.96072 1.21151 0.86173 1.02675
0.99031 1.24234 0.89514 0.80711 0.74543 1.90676 1.68692 1.28247
1.55630 1.86496 1.31102 1.46819 1.62917 1.23525 0.78754 1.03632
1.00681 1.21743 0.96298 0.96725 1.00259 1.21624 0.88132 1.02873
0.87946 0.88455 0.89333 0.89264 0.95966 0.89972 0.97563 1.00493
0.93067 0.92690 0.88154 0.92525 0.86938 0.88706 0.92871 0.86638
0.83451 0.92650 0.91908 0.84968 0.93503 0.89100 0.90790 0.87968
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -8.19 13.97 67.78 0.95 -7.24 16
2 C -0.11 -4.77 6.65 25.65 0.17 -4.60 16
3 C 0.10 4.34 3.69 85.56 0.32 4.66 16
4 N -0.53 -23.29 4.19 -884.45 -3.71 -27.00 16
5 C 0.21 11.01 4.26 85.56 0.36 11.37 16
6 C -0.50 -27.86 7.63 25.60 0.20 -27.66 16
7 H 0.06 3.57 5.93 -2.91 -0.02 3.55 16
8 C 0.01 0.45 5.46 84.66 0.46 0.91 16
9 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16
10 Si 0.95 45.30 29.54 68.60 2.03 47.32 16
11 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16
12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16
13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16
14 C 0.06 1.98 1.85 44.17 0.08 2.06 16
15 H 0.10 3.31 6.45 -2.38 -0.02 3.30 16
16 C -0.17 -4.57 8.07 71.98 0.58 -3.99 16
17 C 0.53 16.68 6.74 87.66 0.59 17.27 16
18 O -0.56 -22.40 13.73 -3.03 -0.04 -22.45 16
19 N -0.61 -13.26 2.97 -818.06 -2.43 -15.69 16
20 C 0.10 1.39 5.32 86.51 0.46 1.85 16
21 C -0.12 -1.60 5.31 30.82 0.16 -1.44 16
22 C -0.07 -0.94 2.59 -11.51 -0.03 -0.97 16
23 C 0.47 8.50 7.26 71.24 0.52 9.02 16
24 O -0.54 -13.87 15.73 21.95 0.35 -13.52 16
25 O -0.36 -5.40 10.44 -51.36 -0.54 -5.94 16
26 C 0.03 0.30 10.56 113.37 1.20 1.50 16
27 C -0.11 -1.97 4.65 30.67 0.14 -1.82 16
28 C 0.12 2.14 6.44 86.36 0.56 2.70 16
29 H 0.10 3.60 8.06 -2.91 -0.02 3.57 16
30 H 0.09 3.46 7.84 -2.91 -0.02 3.44 16
31 H 0.09 4.04 7.94 -2.91 -0.02 4.01 16
32 H 0.02 0.93 6.78 -2.39 -0.02 0.92 16
33 H 0.08 3.34 5.72 -2.39 -0.01 3.32 16
34 H 0.01 0.34 7.73 -2.39 -0.02 0.32 16
35 H -0.02 -1.24 7.08 -2.38 -0.02 -1.26 16
36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16
37 H 0.05 1.73 7.03 -2.39 -0.02 1.72 16
38 H 0.10 1.84 6.53 -2.39 -0.02 1.82 16
39 H 0.06 1.58 6.98 -2.39 -0.02 1.57 16
40 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16
41 H 0.09 1.41 5.04 -2.39 -0.01 1.40 16
42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16
43 H 0.12 0.99 8.08 -2.39 -0.02 0.98 16
44 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16
45 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16
46 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16
47 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16
48 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16
49 H 0.09 1.46 8.07 -2.39 -0.02 1.44 16
50 H 0.07 1.79 7.00 -2.39 -0.02 1.77 16
51 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
Total: -1.00 -76.28 397.33 3.57 -72.71
By element:
Atomic # 1 Polarization: 15.00 SS G_CDS: 0.91 Total: 15.91 kcal
Atomic # 6 Polarization: -3.10 SS G_CDS: 6.71 Total: 3.61 kcal
Atomic # 7 Polarization: -91.80 SS G_CDS: -5.85 Total: -97.65 kcal
Atomic # 8 Polarization: -41.68 SS G_CDS: -0.23 Total: -41.91 kcal
Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal
Total: -76.28 3.57 -72.71 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000292151034.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.452 kcal
(2) G-P(sol) polarization free energy of solvation -76.284 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.736 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.714 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.166 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds