Wall clock time and date at job start Tue Mar 31 2020 21:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47258 * 2 1 4 4 C 1.50693 * 109.47292 * 239.99695 * 2 1 3 5 5 H 1.07996 * 120.00480 * 240.00020 * 4 2 1 6 6 C 1.37882 * 120.00016 * 59.99989 * 4 2 1 7 7 N 1.31508 * 119.99939 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00112 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46707 * 60.00289 * 8 6 4 10 10 H 1.48500 * 109.46912 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46972 * 300.00176 * 8 6 4 12 12 N 1.46497 * 109.47197 * 119.99510 * 2 1 3 13 13 C 1.34773 * 120.00412 * 275.00324 * 12 2 1 14 14 O 1.21614 * 119.99778 * 359.97438 * 13 12 2 15 15 C 1.47098 * 120.00370 * 180.02562 * 13 12 2 16 16 C 1.33000 * 120.00152 * 186.82975 * 15 13 12 17 17 C 1.51294 * 120.80560 * 193.41719 * 16 15 13 18 18 C 1.53395 * 108.42342 * 232.97883 * 17 16 15 19 19 N 1.46848 * 108.77627 * 310.57650 * 18 17 16 20 20 C 1.34785 * 120.38064 * 237.62280 * 19 18 17 21 21 O 1.21507 * 119.99822 * 359.97438 * 20 19 18 22 22 O 1.34637 * 119.99879 * 179.72986 * 20 19 18 23 23 C 1.45202 * 116.99790 * 180.27620 * 22 20 19 24 24 C 1.52994 * 109.47242 * 59.99425 * 23 22 20 25 25 C 1.53001 * 109.46720 * 179.97438 * 23 22 20 26 26 C 1.53002 * 109.46767 * 299.99427 * 23 22 20 27 27 C 1.46857 * 119.23967 * 57.89541 * 19 18 17 28 28 C 1.51293 * 120.80588 * 13.44137 * 16 15 13 29 29 H 1.08992 * 109.47002 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46705 * 300.00347 * 1 2 3 31 31 H 1.08999 * 109.47032 * 59.99979 * 1 2 3 32 32 H 0.96998 * 120.00466 * 179.97438 * 7 6 4 33 33 H 0.97007 * 119.99842 * 94.99964 * 12 2 1 34 34 H 1.07999 * 120.00332 * 6.82198 * 15 13 12 35 35 H 1.08999 * 109.67130 * 113.24400 * 17 16 15 36 36 H 1.09005 * 109.70567 * 352.73231 * 17 16 15 37 37 H 1.09004 * 109.58626 * 190.78451 * 18 17 16 38 38 H 1.09000 * 109.70270 * 70.43873 * 18 17 16 39 39 H 1.09011 * 109.47217 * 60.00284 * 24 23 22 40 40 H 1.08997 * 109.47243 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47650 * 300.00186 * 24 23 22 42 42 H 1.08998 * 109.47335 * 60.00104 * 25 23 22 43 43 H 1.09002 * 109.46365 * 179.97438 * 25 23 22 44 44 H 1.08997 * 109.47495 * 299.99532 * 25 23 22 45 45 H 1.08998 * 109.46885 * 60.00573 * 26 23 22 46 46 H 1.09005 * 109.46490 * 180.02562 * 26 23 22 47 47 H 1.08998 * 109.47392 * 299.99960 * 26 23 22 48 48 H 1.09006 * 109.58644 * 61.89215 * 27 19 18 49 49 H 1.09000 * 109.58761 * 182.31435 * 27 19 18 50 50 H 1.08999 * 109.67081 * 246.75793 * 28 16 15 51 51 H 1.09002 * 109.67234 * 7.25021 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8281 -2.5199 -4.0080 10 1 1.8270 -0.4201 -5.2204 11 1 3.8076 -1.1191 -4.0076 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1619 2.4116 15 6 2.6379 -0.7113 3.5581 16 6 2.6370 -0.0879 4.7329 17 6 3.4022 -0.6518 5.9100 18 6 2.4436 -0.7646 7.1022 19 7 1.7366 0.5124 7.2628 20 6 1.8087 1.1899 8.4257 21 8 2.4612 0.7445 9.3489 22 8 1.1618 2.3627 8.5627 23 6 1.2890 3.0403 9.8407 24 6 2.7630 3.3499 10.1093 25 6 0.4920 4.3459 9.8071 26 6 0.7463 2.1393 10.9518 27 6 0.9451 1.0398 6.1438 28 6 1.8702 1.2021 4.9249 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7096 1.1617 -3.4844 33 1 2.2491 -1.6317 1.1527 34 1 2.9990 -1.7266 3.4860 35 1 4.2272 0.0137 6.1641 36 1 3.7911 -1.6382 5.6570 37 1 3.0102 -0.9850 8.0070 38 1 1.7224 -1.5613 6.9197 39 1 3.1497 3.9918 9.3177 40 1 2.8584 3.8589 11.0684 41 1 3.3312 2.4200 10.1330 42 1 -0.5582 4.1257 9.6155 43 1 0.5871 4.8542 10.7666 44 1 0.8789 4.9876 9.0156 45 1 1.3145 1.2094 10.9755 46 1 0.8414 2.6482 11.9110 47 1 -0.3038 1.9187 10.7604 48 1 0.1405 0.3440 5.9054 49 1 0.5249 2.0075 6.4176 50 1 2.5679 2.0216 5.0971 51 1 1.2727 1.4095 4.0370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293040421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:38 Heat of formation + Delta-G solvation = -101.693043 kcal Electronic energy + Delta-G solvation = -29961.650030 eV Core-core repulsion = 25861.589508 eV Total energy + Delta-G solvation = -4100.060521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06676 -39.42978 -38.31737 -36.65028 -34.96631 -34.43066 -33.42062 -32.40897 -31.36344 -29.56805 -28.03136 -27.66878 -27.63274 -25.27028 -24.50198 -23.61941 -22.23962 -21.17457 -19.87048 -19.51830 -18.79009 -17.82014 -16.88176 -16.71982 -16.29332 -15.89629 -15.47695 -15.11228 -14.81938 -14.74969 -14.53092 -14.26587 -13.96146 -13.89889 -13.65205 -13.41595 -13.12483 -13.01956 -12.72188 -12.42629 -12.39452 -12.15709 -12.15094 -12.08809 -11.70084 -11.68227 -11.54620 -11.35801 -11.24456 -11.09477 -10.97283 -10.88150 -10.64646 -10.58785 -10.32629 -10.23601 -10.12682 -9.33385 -9.07111 -8.89854 -8.56828 -8.46197 -7.87186 -6.13020 -4.22294 1.60344 1.96895 2.68387 3.24963 3.30282 3.31435 3.61915 3.92233 4.10567 4.37079 4.45274 4.50120 4.61362 4.64286 4.81316 4.85441 5.10462 5.11750 5.19383 5.19650 5.23120 5.26807 5.34575 5.42124 5.45431 5.50958 5.54804 5.58695 5.58960 5.66538 5.72783 5.75112 5.96099 6.01777 6.05063 6.22480 6.29472 6.30539 6.60758 6.74668 6.85728 6.97537 7.14447 7.19609 7.47868 7.56867 7.69746 7.91384 8.14519 8.17005 8.67558 8.77632 9.13790 9.45362 10.92875 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.026906 B = 0.002016 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.422491 B =13887.524835 C =14487.928427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.702 5.702 13 C 0.531 3.469 14 O -0.553 6.553 15 C -0.206 4.206 16 C -0.050 4.050 17 C -0.104 4.104 18 C 0.130 3.870 19 N -0.594 5.594 20 C 0.654 3.346 21 O -0.575 6.575 22 O -0.360 6.360 23 C 0.135 3.865 24 C -0.183 4.183 25 C -0.141 4.141 26 C -0.182 4.182 27 C 0.114 3.886 28 C -0.131 4.131 29 H 0.026 0.974 30 H 0.015 0.985 31 H 0.090 0.910 32 H 0.265 0.735 33 H 0.389 0.611 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.076 0.924 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 0.388 24.636 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.348 5.348 13 C 0.319 3.681 14 O -0.435 6.435 15 C -0.227 4.227 16 C -0.052 4.052 17 C -0.142 4.142 18 C 0.008 3.992 19 N -0.335 5.335 20 C 0.409 3.591 21 O -0.465 6.465 22 O -0.275 6.275 23 C 0.098 3.902 24 C -0.240 4.240 25 C -0.198 4.198 26 C -0.239 4.239 27 C -0.008 4.008 28 C -0.168 4.168 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.113 0.887 50 H 0.094 0.906 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.442 1.273 24.798 24.834 hybrid contribution 0.516 -1.032 -0.927 1.480 sum 0.958 0.241 23.871 23.891 Atomic orbital electron populations 1.22068 0.98407 0.99087 1.00889 1.18744 0.91028 0.94021 0.80053 0.93310 1.21185 1.32492 1.13237 0.90383 0.92161 1.24892 0.94821 0.94967 0.99063 1.69886 1.35827 1.22386 1.23987 0.86505 0.79167 0.79580 0.81816 1.20176 1.21135 1.20188 1.46494 1.64173 1.13440 1.10688 1.18475 0.78566 0.86974 0.84044 1.90544 1.52507 1.16132 1.84350 1.22619 1.06464 1.00341 0.93246 1.22345 0.93493 0.95812 0.93563 1.21310 0.97535 1.02236 0.93079 1.21640 0.94986 0.83176 0.99359 1.47057 1.51975 1.22804 1.11627 1.17984 0.78261 0.79759 0.83080 1.90862 1.45804 1.70273 1.39601 1.86320 1.68559 1.33258 1.39366 1.22069 0.96591 0.91642 0.79892 1.22509 0.95300 1.04033 1.02163 1.21861 1.00428 0.94454 1.03094 1.22508 1.01778 1.01947 0.97714 1.22021 0.93365 1.00252 0.85140 1.22050 0.99480 0.94886 1.00412 0.95519 0.96629 0.89169 0.92518 0.77851 0.85921 0.89603 0.89381 0.88274 0.90647 0.92112 0.91249 0.89433 0.91439 0.90217 0.91330 0.89429 0.91244 0.92222 0.90945 0.88671 0.90593 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.23 16 2 C 0.26 6.61 2.56 -69.09 -0.18 6.43 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.71 11.32 55.43 0.63 -24.08 16 8 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 12 N -0.70 -14.34 5.07 -56.12 -0.28 -14.63 16 13 C 0.53 10.23 7.57 -12.67 -0.10 10.14 16 14 O -0.55 -12.32 12.90 5.27 0.07 -12.25 16 15 C -0.21 -2.93 9.65 -37.81 -0.36 -3.30 16 16 C -0.05 -0.64 5.34 -100.58 -0.54 -1.18 16 17 C -0.10 -1.02 6.21 -27.39 -0.17 -1.19 16 18 C 0.13 1.27 6.44 -3.65 -0.02 1.25 16 19 N -0.59 -6.86 2.90 -178.12 -0.52 -7.38 16 20 C 0.65 8.28 7.73 54.06 0.42 8.70 16 21 O -0.58 -8.01 11.26 -19.28 -0.22 -8.22 16 22 O -0.36 -4.24 8.49 -40.32 -0.34 -4.59 16 23 C 0.13 1.28 1.13 -90.62 -0.10 1.17 16 24 C -0.18 -1.69 8.37 37.15 0.31 -1.38 16 25 C -0.14 -1.00 8.85 37.16 0.33 -0.67 16 26 C -0.18 -1.62 8.37 37.16 0.31 -1.31 16 27 C 0.11 1.32 6.49 -3.39 -0.02 1.29 16 28 C -0.13 -1.80 5.50 -27.13 -0.15 -1.95 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.39 6.88 8.52 -40.82 -0.35 6.53 16 34 H 0.12 1.40 7.96 -52.49 -0.42 0.98 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.69 7.92 -51.93 -0.41 0.28 16 37 H 0.10 0.97 6.96 -51.93 -0.36 0.61 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 1.00 5.88 -51.93 -0.31 0.69 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.97 5.88 -51.93 -0.31 0.66 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.09 1.06 6.87 -51.93 -0.36 0.70 16 50 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.14 2.32 4.78 -52.80 -0.25 2.07 16 LS Contribution 400.63 15.07 6.04 6.04 Total: -1.00 -30.99 400.63 -8.48 -39.47 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -8.50 Total: 8.04 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.32 Total: 2.10 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.17 Total: -46.08 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.49 Total: -25.06 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.99 -8.48 -39.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293040421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.223 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds