Wall clock time and date at job start Tue Mar 31 2020 21:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47258 * 2 1 4 4 C 1.50693 * 109.47292 * 239.99695 * 2 1 3 5 5 H 1.07996 * 120.00480 * 240.00020 * 4 2 1 6 6 C 1.37882 * 120.00016 * 59.99989 * 4 2 1 7 7 N 1.31508 * 119.99939 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00112 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46707 * 60.00289 * 8 6 4 10 10 H 1.48500 * 109.46912 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46972 * 300.00176 * 8 6 4 12 12 N 1.46497 * 109.47197 * 119.99510 * 2 1 3 13 13 C 1.34773 * 120.00412 * 275.00324 * 12 2 1 14 14 O 1.21614 * 119.99778 * 359.97438 * 13 12 2 15 15 C 1.47098 * 120.00370 * 180.02562 * 13 12 2 16 16 C 1.33000 * 120.00152 * 186.82975 * 15 13 12 17 17 C 1.51294 * 120.80560 * 193.41719 * 16 15 13 18 18 C 1.53395 * 108.42342 * 232.97883 * 17 16 15 19 19 N 1.46848 * 108.77627 * 310.57650 * 18 17 16 20 20 C 1.34785 * 120.38064 * 237.62280 * 19 18 17 21 21 O 1.21507 * 119.99822 * 359.97438 * 20 19 18 22 22 O 1.34637 * 119.99879 * 179.72986 * 20 19 18 23 23 C 1.45202 * 116.99790 * 180.27620 * 22 20 19 24 24 C 1.52994 * 109.47242 * 59.99425 * 23 22 20 25 25 C 1.53001 * 109.46720 * 179.97438 * 23 22 20 26 26 C 1.53002 * 109.46767 * 299.99427 * 23 22 20 27 27 C 1.46857 * 119.23967 * 57.89541 * 19 18 17 28 28 C 1.51293 * 120.80588 * 13.44137 * 16 15 13 29 29 H 1.08992 * 109.47002 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46705 * 300.00347 * 1 2 3 31 31 H 1.08999 * 109.47032 * 59.99979 * 1 2 3 32 32 H 0.96998 * 120.00466 * 179.97438 * 7 6 4 33 33 H 0.97007 * 119.99842 * 94.99964 * 12 2 1 34 34 H 1.07999 * 120.00332 * 6.82198 * 15 13 12 35 35 H 1.08999 * 109.67130 * 113.24400 * 17 16 15 36 36 H 1.09005 * 109.70567 * 352.73231 * 17 16 15 37 37 H 1.09004 * 109.58626 * 190.78451 * 18 17 16 38 38 H 1.09000 * 109.70270 * 70.43873 * 18 17 16 39 39 H 1.09011 * 109.47217 * 60.00284 * 24 23 22 40 40 H 1.08997 * 109.47243 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47650 * 300.00186 * 24 23 22 42 42 H 1.08998 * 109.47335 * 60.00104 * 25 23 22 43 43 H 1.09002 * 109.46365 * 179.97438 * 25 23 22 44 44 H 1.08997 * 109.47495 * 299.99532 * 25 23 22 45 45 H 1.08998 * 109.46885 * 60.00573 * 26 23 22 46 46 H 1.09005 * 109.46490 * 180.02562 * 26 23 22 47 47 H 1.08998 * 109.47392 * 299.99960 * 26 23 22 48 48 H 1.09006 * 109.58644 * 61.89215 * 27 19 18 49 49 H 1.09000 * 109.58761 * 182.31435 * 27 19 18 50 50 H 1.08999 * 109.67081 * 246.75793 * 28 16 15 51 51 H 1.09002 * 109.67234 * 7.25021 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8281 -2.5199 -4.0080 10 1 1.8270 -0.4201 -5.2204 11 1 3.8076 -1.1191 -4.0076 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1619 2.4116 15 6 2.6379 -0.7113 3.5581 16 6 2.6370 -0.0879 4.7329 17 6 3.4022 -0.6518 5.9100 18 6 2.4436 -0.7646 7.1022 19 7 1.7366 0.5124 7.2628 20 6 1.8087 1.1899 8.4257 21 8 2.4612 0.7445 9.3489 22 8 1.1618 2.3627 8.5627 23 6 1.2890 3.0403 9.8407 24 6 2.7630 3.3499 10.1093 25 6 0.4920 4.3459 9.8071 26 6 0.7463 2.1393 10.9518 27 6 0.9451 1.0398 6.1438 28 6 1.8702 1.2021 4.9249 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7096 1.1617 -3.4844 33 1 2.2491 -1.6317 1.1527 34 1 2.9990 -1.7266 3.4860 35 1 4.2272 0.0137 6.1641 36 1 3.7911 -1.6382 5.6570 37 1 3.0102 -0.9850 8.0070 38 1 1.7224 -1.5613 6.9197 39 1 3.1497 3.9918 9.3177 40 1 2.8584 3.8589 11.0684 41 1 3.3312 2.4200 10.1330 42 1 -0.5582 4.1257 9.6155 43 1 0.5871 4.8542 10.7666 44 1 0.8789 4.9876 9.0156 45 1 1.3145 1.2094 10.9755 46 1 0.8414 2.6482 11.9110 47 1 -0.3038 1.9187 10.7604 48 1 0.1405 0.3440 5.9054 49 1 0.5249 2.0075 6.4176 50 1 2.5679 2.0216 5.0971 51 1 1.2727 1.4095 4.0370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293040421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:37 Heat of formation + Delta-G solvation = -120.350029 kcal Electronic energy + Delta-G solvation = -29962.459057 eV Core-core repulsion = 25861.589508 eV Total energy + Delta-G solvation = -4100.869549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.97019 -40.80389 -39.38989 -37.66260 -36.69918 -35.35644 -34.41013 -34.30019 -32.30048 -31.24626 -29.33868 -28.34510 -28.28672 -27.32276 -25.51834 -24.64288 -23.51721 -22.41704 -21.29951 -20.70036 -19.86311 -19.06658 -18.14270 -17.75842 -17.49068 -17.26183 -16.93968 -16.29970 -16.01928 -15.87620 -15.61377 -15.49701 -15.07879 -14.93085 -14.65798 -14.47219 -14.40205 -14.35235 -14.01353 -13.64952 -13.34107 -13.10600 -13.07314 -12.95465 -12.90802 -12.85491 -12.81570 -12.69244 -12.47003 -12.34781 -12.25547 -12.23995 -12.17863 -12.09192 -11.87060 -11.37943 -11.09814 -11.03716 -10.62214 -10.38366 -10.29480 -9.68991 -9.50375 -8.16258 -6.33570 0.42847 1.13746 1.45505 1.47481 1.55234 1.73068 2.37193 2.48043 2.73887 2.77706 3.14012 3.70356 3.74659 3.78941 3.81612 3.96252 3.98108 4.07719 4.22075 4.37823 4.42430 4.44522 4.56875 4.63137 4.64856 4.74903 4.76602 4.77953 4.78298 4.85213 4.88782 4.93627 4.94719 4.98167 5.11827 5.12006 5.15863 5.29376 5.30431 5.38087 5.43389 5.47118 5.53411 5.60395 5.74215 5.78748 5.96790 6.13326 6.26067 6.74663 7.05211 7.24305 7.34444 7.63549 8.89638 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.026906 B = 0.002016 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.422491 B =13887.524835 C =14487.928427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.002 1.002 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.264 1.264 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.702 5.702 13 C 0.524 3.476 14 O -0.592 6.592 15 C -0.215 4.215 16 C -0.032 4.032 17 C -0.095 4.095 18 C 0.127 3.873 19 N -0.595 5.595 20 C 0.649 3.351 21 O -0.590 6.590 22 O -0.370 6.370 23 C 0.122 3.878 24 C -0.178 4.178 25 C -0.137 4.137 26 C -0.176 4.176 27 C 0.125 3.875 28 C -0.132 4.132 29 H 0.039 0.961 30 H 0.014 0.986 31 H 0.065 0.935 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.161 0.839 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.095 0.905 50 H 0.066 0.934 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 -1.392 26.063 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.349 5.349 13 C 0.315 3.685 14 O -0.477 6.477 15 C -0.235 4.235 16 C -0.034 4.034 17 C -0.132 4.132 18 C 0.007 3.993 19 N -0.336 5.336 20 C 0.405 3.595 21 O -0.481 6.481 22 O -0.285 6.285 23 C 0.086 3.914 24 C -0.235 4.235 25 C -0.194 4.194 26 C -0.234 4.234 27 C 0.002 3.998 28 C -0.169 4.169 29 H 0.058 0.942 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.178 0.822 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.122 0.878 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.110 0.890 47 H 0.079 0.921 48 H 0.101 0.899 49 H 0.114 0.886 50 H 0.084 0.916 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.110 -0.540 26.253 26.282 hybrid contribution 0.301 -0.360 -1.256 1.340 sum 1.411 -0.900 24.997 25.053 Atomic orbital electron populations 1.21878 0.98240 0.99368 0.99588 1.18312 0.91130 0.91877 0.82012 0.98430 1.21532 1.32551 1.13557 0.90903 0.90938 1.25812 0.94936 0.95629 1.02357 1.70042 1.37001 1.23887 1.24619 0.85399 0.78607 0.78727 0.77604 1.18843 1.21250 1.19645 1.46238 1.64735 1.14094 1.09870 1.19314 0.77501 0.86719 0.84978 1.90557 1.53913 1.18110 1.85092 1.22504 1.08012 1.01936 0.91066 1.22630 0.91860 0.94599 0.94358 1.21351 0.96868 1.03728 0.91288 1.21813 0.95369 0.82790 0.99344 1.47177 1.51974 1.23262 1.11149 1.18151 0.78217 0.79981 0.83200 1.90857 1.46461 1.70707 1.40122 1.86328 1.68403 1.32993 1.40784 1.22429 0.97160 0.92545 0.79258 1.22459 0.94877 1.02929 1.03273 1.21888 0.99992 0.93182 1.04348 1.22447 1.01288 1.00999 0.98624 1.21874 0.92929 1.00773 0.84205 1.21900 0.99431 0.95474 1.00142 0.94225 0.96691 0.91636 0.92586 0.76036 0.82168 0.89629 0.86156 0.88038 0.88797 0.92538 0.88988 0.91720 0.91291 0.87819 0.91694 0.91709 0.89048 0.92088 0.89927 0.88649 0.91590 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 9.26 71.98 0.67 -5.97 16 2 C 0.27 13.96 2.56 44.24 0.11 14.07 16 3 H 0.00 -0.14 7.58 -2.38 -0.02 -0.15 16 4 C -0.55 -28.87 8.73 25.60 0.22 -28.65 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -52.59 11.32 21.45 0.24 -52.35 16 8 Si 0.97 41.85 29.54 68.60 2.03 43.88 16 9 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 N -0.70 -28.73 5.07 -449.73 -2.28 -31.01 16 13 C 0.52 20.33 7.57 86.57 0.66 20.99 16 14 O -0.59 -27.55 12.90 -4.07 -0.05 -27.61 16 15 C -0.21 -5.72 9.65 23.43 0.23 -5.49 16 16 C -0.03 -0.77 5.34 -17.24 -0.09 -0.86 16 17 C -0.09 -1.57 6.21 30.17 0.19 -1.38 16 18 C 0.13 2.17 6.44 86.45 0.56 2.72 16 19 N -0.60 -12.99 2.90 -947.85 -2.75 -15.74 16 20 C 0.65 16.01 7.73 129.79 1.00 17.02 16 21 O -0.59 -16.12 11.26 19.82 0.22 -15.89 16 22 O -0.37 -8.56 8.49 -55.46 -0.47 -9.03 16 23 C 0.12 2.19 1.13 -10.79 -0.01 2.17 16 24 C -0.18 -3.14 8.37 71.98 0.60 -2.53 16 25 C -0.14 -1.72 8.85 71.98 0.64 -1.08 16 26 C -0.18 -2.91 8.37 71.98 0.60 -2.31 16 27 C 0.12 2.79 6.49 86.61 0.56 3.35 16 28 C -0.13 -3.64 5.50 30.33 0.17 -3.48 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 3.62 6.07 -2.39 -0.01 3.61 16 32 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.40 13.83 8.52 -92.70 -0.79 13.04 16 34 H 0.16 3.04 7.96 -2.91 -0.02 3.02 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.12 1.31 7.92 -2.38 -0.02 1.29 16 37 H 0.10 1.75 6.96 -2.38 -0.02 1.74 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.46 5.88 -2.39 -0.01 1.44 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 46 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 49 H 0.10 2.13 6.87 -2.39 -0.02 2.11 16 50 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.11 3.77 4.78 -16.27 -0.08 3.69 16 Total: -1.00 -70.18 400.63 3.56 -66.62 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.07 Total: 31.43 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.55 Total: 9.69 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -4.79 Total: -99.10 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.30 Total: -52.52 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -70.18 3.56 -66.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293040421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.734 kcal (2) G-P(sol) polarization free energy of solvation -70.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds