Wall clock time and date at job start Tue Mar 31 2020 21:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47192 * 2 1 4 4 C 1.50693 * 109.47446 * 120.00315 * 2 1 3 5 5 H 1.07999 * 120.00420 * 120.00043 * 4 2 1 6 6 C 1.37874 * 120.00271 * 300.00155 * 4 2 1 7 7 N 1.31508 * 120.00497 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99630 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47036 * 90.00148 * 8 6 4 10 10 H 1.48506 * 109.47028 * 209.99892 * 8 6 4 11 11 H 1.48501 * 109.47189 * 330.00313 * 8 6 4 12 12 N 1.46499 * 109.46891 * 240.00571 * 2 1 3 13 13 C 1.34775 * 120.00548 * 84.99718 * 12 2 1 14 14 O 1.21620 * 119.99630 * 0.02562 * 13 12 2 15 15 C 1.47099 * 120.00709 * 180.02562 * 13 12 2 16 16 C 1.32986 * 120.00376 * 186.83298 * 15 13 12 17 17 C 1.51297 * 120.80963 * 193.41782 * 16 15 13 18 18 C 1.53391 * 108.42825 * 232.98285 * 17 16 15 19 19 N 1.46860 * 108.77504 * 310.57104 * 18 17 16 20 20 C 1.34779 * 120.38284 * 237.62879 * 19 18 17 21 21 O 1.21516 * 120.00038 * 359.97438 * 20 19 18 22 22 O 1.34632 * 119.99955 * 180.02562 * 20 19 18 23 23 C 1.45206 * 117.00065 * 179.97438 * 22 20 19 24 24 C 1.53002 * 109.46943 * 59.99668 * 23 22 20 25 25 C 1.52999 * 109.46929 * 299.99972 * 23 22 20 26 26 C 1.52995 * 109.47254 * 179.97438 * 23 22 20 27 27 C 1.46856 * 119.23723 * 57.89268 * 19 18 17 28 28 C 1.51294 * 120.80772 * 13.43893 * 16 15 13 29 29 H 1.08997 * 109.46746 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46883 * 299.99600 * 1 2 3 31 31 H 1.08996 * 109.47195 * 59.99922 * 1 2 3 32 32 H 0.97006 * 120.00311 * 179.97438 * 7 6 4 33 33 H 0.97006 * 120.00024 * 264.99662 * 12 2 1 34 34 H 1.08005 * 119.99432 * 6.82738 * 15 13 12 35 35 H 1.08999 * 109.67598 * 113.24227 * 17 16 15 36 36 H 1.09007 * 109.69926 * 352.73489 * 17 16 15 37 37 H 1.09003 * 109.59007 * 190.78833 * 18 17 16 38 38 H 1.08998 * 109.70480 * 70.42968 * 18 17 16 39 39 H 1.09000 * 109.47238 * 300.00113 * 24 23 22 40 40 H 1.09002 * 109.47187 * 60.00202 * 24 23 22 41 41 H 1.08997 * 109.47080 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.47091 * 180.02562 * 25 23 22 43 43 H 1.09002 * 109.46955 * 299.99422 * 25 23 22 44 44 H 1.08995 * 109.47464 * 59.99420 * 25 23 22 45 45 H 1.09002 * 109.47525 * 300.00195 * 26 23 22 46 46 H 1.09002 * 109.47027 * 60.00335 * 26 23 22 47 47 H 1.09002 * 109.47476 * 179.97438 * 26 23 22 48 48 H 1.09000 * 109.58276 * 61.89319 * 27 19 18 49 49 H 1.08998 * 109.58836 * 182.31732 * 27 19 18 50 50 H 1.08997 * 109.68013 * 246.75210 * 28 16 15 51 51 H 1.08998 * 109.67525 * 7.25774 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 2.1382 -0.8592 3.5564 8 14 0.6260 1.2796 2.6541 9 1 -0.8020 0.8742 2.6994 10 1 0.9773 1.9951 3.9072 11 1 0.8491 2.1772 1.4923 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1620 -2.4116 15 6 2.6367 -0.7116 -3.5585 16 6 2.8930 -0.0220 -4.6663 17 6 3.1035 -0.7284 -5.9876 18 6 4.4337 -0.2529 -6.5852 19 7 4.4685 1.2149 -6.5532 20 6 4.6388 1.9178 -7.6905 21 8 4.7653 1.3371 -8.7504 22 8 4.6700 3.2632 -7.6521 23 6 4.8574 3.9546 -8.9152 24 6 3.7141 3.5967 -9.8669 25 6 6.1897 3.5300 -9.5361 26 6 4.8652 5.4653 -8.6734 27 6 4.3212 1.9080 -5.2668 28 6 2.9818 1.4880 -4.6360 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.9042 -0.5276 4.4375 33 1 2.2490 -1.6317 -1.1528 34 1 2.7882 -1.7808 -3.5407 35 1 2.2875 -0.4849 -6.6680 36 1 3.1378 -1.8060 -5.8267 37 1 4.5154 -0.5978 -7.6160 38 1 5.2627 -0.6509 -6.0000 39 1 3.7082 2.5205 -10.0392 40 1 2.7649 3.8991 -9.4246 41 1 3.8550 4.1153 -10.8152 42 1 6.3306 4.0494 -10.4841 43 1 7.0042 3.7850 -8.8581 44 1 6.1838 2.4538 -9.7084 45 1 3.9158 5.7674 -8.2312 46 1 5.6795 5.7205 -7.9952 47 1 5.0063 5.9843 -9.6215 48 1 5.1425 1.6302 -4.6061 49 1 4.3288 2.9857 -5.4294 50 1 2.1558 1.9157 -5.2042 51 1 2.9376 1.8376 -3.6046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293040423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:41 Heat of formation + Delta-G solvation = -93.434098 kcal Electronic energy + Delta-G solvation = -30038.887130 eV Core-core repulsion = 25939.184744 eV Total energy + Delta-G solvation = -4099.702387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10367 -39.56847 -38.42064 -36.71189 -35.17072 -34.48759 -33.49114 -32.42535 -31.42308 -30.25289 -28.39529 -27.69860 -27.66191 -25.22646 -24.57848 -23.69200 -22.33644 -21.25914 -19.92897 -19.66698 -18.84759 -17.88087 -16.92935 -16.89934 -16.37672 -16.00362 -15.62431 -15.38012 -14.90169 -14.78652 -14.61433 -14.38578 -14.01528 -13.90007 -13.71294 -13.54579 -13.14221 -13.07628 -12.92047 -12.75651 -12.45380 -12.21263 -12.19603 -12.18516 -12.13788 -11.80493 -11.71231 -11.58701 -11.49139 -11.37366 -11.10287 -10.94357 -10.78144 -10.61938 -10.20014 -10.16342 -9.68683 -9.40758 -9.24107 -9.03373 -8.76125 -8.58008 -8.10547 -6.22164 -4.24788 1.50028 1.93239 2.64764 3.22408 3.34416 3.38573 3.57949 3.76223 3.96851 4.30390 4.42234 4.47111 4.55794 4.61159 4.72568 4.80177 5.02930 5.06218 5.12690 5.16718 5.18619 5.23962 5.29557 5.39310 5.41311 5.46708 5.50408 5.53193 5.54577 5.56059 5.69028 5.70148 5.89447 5.99149 6.01620 6.15533 6.23103 6.25376 6.31443 6.35509 6.52326 6.55093 6.70067 6.87750 7.15546 7.19962 7.30958 7.51277 8.13463 8.15102 8.52761 8.74922 8.93930 9.38710 10.89973 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021606 B = 0.002176 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.655133 B =12865.697309 C =13516.775656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.694 5.694 13 C 0.534 3.466 14 O -0.554 6.554 15 C -0.207 4.207 16 C -0.046 4.046 17 C -0.104 4.104 18 C 0.129 3.871 19 N -0.595 5.595 20 C 0.654 3.346 21 O -0.574 6.574 22 O -0.361 6.361 23 C 0.135 3.865 24 C -0.183 4.183 25 C -0.182 4.182 26 C -0.141 4.141 27 C 0.114 3.886 28 C -0.132 4.132 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.267 0.733 33 H 0.396 0.604 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.076 0.924 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.656 5.809 -25.594 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.341 5.341 13 C 0.323 3.677 14 O -0.437 6.437 15 C -0.228 4.228 16 C -0.048 4.048 17 C -0.142 4.142 18 C 0.008 3.992 19 N -0.335 5.335 20 C 0.409 3.591 21 O -0.465 6.465 22 O -0.275 6.275 23 C 0.098 3.902 24 C -0.240 4.240 25 C -0.240 4.240 26 C -0.198 4.198 27 C -0.008 4.008 28 C -0.169 4.169 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.229 0.771 34 H 0.144 0.856 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.092 0.908 49 H 0.114 0.886 50 H 0.094 0.906 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.508 6.519 -25.738 27.116 hybrid contribution -0.556 0.102 0.318 0.649 sum 4.952 6.621 -25.420 26.730 Atomic orbital electron populations 1.22448 0.99317 1.00839 0.99300 1.19105 0.90129 0.94691 0.82850 0.93311 1.21040 1.33254 1.14440 0.88557 0.90215 1.24841 0.95510 0.96733 0.95537 1.69868 1.44893 1.40127 0.98047 0.86865 0.80506 0.83599 0.77427 1.20345 1.22187 1.18629 1.46156 1.64342 1.13901 1.09659 1.18520 0.78793 0.86726 0.83689 1.90545 1.52344 1.15884 1.84950 1.22546 1.06092 1.00285 0.93846 1.22367 0.92872 0.96197 0.93412 1.21318 0.98106 1.00263 0.94508 1.21648 0.97225 0.76992 1.03335 1.47055 1.74286 1.06495 1.05658 1.17982 0.76094 0.81023 0.83982 1.90867 1.56232 1.70641 1.28728 1.86316 1.85609 1.18292 1.37324 1.22069 0.96113 0.91500 0.80492 1.22510 0.97479 1.04977 0.99037 1.22508 0.95626 1.04820 1.01011 1.21863 1.03533 0.91479 1.02974 1.22018 0.98049 0.97784 0.82960 1.22061 0.96161 0.92055 1.06632 0.92867 0.93487 0.94520 0.92285 0.77058 0.85644 0.89565 0.89280 0.88212 0.90546 0.89426 0.92140 0.91232 0.91226 0.92201 0.89416 0.91362 0.91426 0.90197 0.90830 0.88649 0.90573 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.96 37.16 0.33 -3.23 16 2 C 0.24 5.52 2.15 -69.08 -0.15 5.37 16 3 H 0.05 1.25 6.63 -51.93 -0.34 0.91 16 4 C -0.53 -14.28 9.31 -34.44 -0.32 -14.60 16 5 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 8 Si 0.89 21.58 24.37 -169.99 -4.14 17.43 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 12 N -0.69 -13.42 5.07 -56.12 -0.28 -13.71 16 13 C 0.53 9.64 7.58 -12.67 -0.10 9.54 16 14 O -0.55 -11.51 12.90 5.26 0.07 -11.44 16 15 C -0.21 -2.77 9.65 -37.81 -0.36 -3.13 16 16 C -0.05 -0.56 5.34 -100.59 -0.54 -1.10 16 17 C -0.10 -0.96 6.21 -27.39 -0.17 -1.13 16 18 C 0.13 1.21 6.44 -3.64 -0.02 1.19 16 19 N -0.59 -6.62 2.90 -178.11 -0.52 -7.14 16 20 C 0.65 8.05 7.73 54.06 0.42 8.47 16 21 O -0.57 -7.80 11.26 -19.28 -0.22 -8.02 16 22 O -0.36 -4.13 8.49 -40.30 -0.34 -4.47 16 23 C 0.13 1.24 1.13 -90.62 -0.10 1.14 16 24 C -0.18 -1.63 8.37 37.16 0.31 -1.32 16 25 C -0.18 -1.58 8.37 37.16 0.31 -1.27 16 26 C -0.14 -0.97 8.85 37.15 0.33 -0.64 16 27 C 0.11 1.26 6.49 -3.38 -0.02 1.24 16 28 C -0.13 -1.71 5.50 -27.13 -0.15 -1.86 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.40 6.74 8.52 -40.82 -0.35 6.39 16 34 H 0.13 1.34 7.97 -52.48 -0.42 0.92 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.64 7.92 -51.93 -0.41 0.23 16 37 H 0.10 0.94 6.96 -51.93 -0.36 0.58 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.97 5.88 -51.93 -0.31 0.66 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.95 5.88 -51.93 -0.31 0.64 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.10 1.02 6.87 -51.93 -0.36 0.66 16 50 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.14 2.19 4.78 -52.82 -0.25 1.93 16 LS Contribution 393.81 15.07 5.93 5.93 Total: -1.00 -31.91 393.81 -7.43 -39.33 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -8.37 Total: 6.80 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -0.33 Total: 0.73 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.03 Total: -46.31 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.49 Total: -23.93 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.91 -7.43 -39.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293040423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.101 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds