Wall clock time and date at job start Tue Mar 31 2020 21:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47192 * 2 1 4 4 C 1.50693 * 109.47446 * 120.00315 * 2 1 3 5 5 H 1.07999 * 120.00420 * 120.00043 * 4 2 1 6 6 C 1.37874 * 120.00271 * 300.00155 * 4 2 1 7 7 N 1.31508 * 120.00497 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99630 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47036 * 90.00148 * 8 6 4 10 10 H 1.48506 * 109.47028 * 209.99892 * 8 6 4 11 11 H 1.48501 * 109.47189 * 330.00313 * 8 6 4 12 12 N 1.46499 * 109.46891 * 240.00571 * 2 1 3 13 13 C 1.34775 * 120.00548 * 84.99718 * 12 2 1 14 14 O 1.21620 * 119.99630 * 0.02562 * 13 12 2 15 15 C 1.47099 * 120.00709 * 180.02562 * 13 12 2 16 16 C 1.32986 * 120.00376 * 186.83298 * 15 13 12 17 17 C 1.51297 * 120.80963 * 193.41782 * 16 15 13 18 18 C 1.53391 * 108.42825 * 232.98285 * 17 16 15 19 19 N 1.46860 * 108.77504 * 310.57104 * 18 17 16 20 20 C 1.34779 * 120.38284 * 237.62879 * 19 18 17 21 21 O 1.21516 * 120.00038 * 359.97438 * 20 19 18 22 22 O 1.34632 * 119.99955 * 180.02562 * 20 19 18 23 23 C 1.45206 * 117.00065 * 179.97438 * 22 20 19 24 24 C 1.53002 * 109.46943 * 59.99668 * 23 22 20 25 25 C 1.52999 * 109.46929 * 299.99972 * 23 22 20 26 26 C 1.52995 * 109.47254 * 179.97438 * 23 22 20 27 27 C 1.46856 * 119.23723 * 57.89268 * 19 18 17 28 28 C 1.51294 * 120.80772 * 13.43893 * 16 15 13 29 29 H 1.08997 * 109.46746 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46883 * 299.99600 * 1 2 3 31 31 H 1.08996 * 109.47195 * 59.99922 * 1 2 3 32 32 H 0.97006 * 120.00311 * 179.97438 * 7 6 4 33 33 H 0.97006 * 120.00024 * 264.99662 * 12 2 1 34 34 H 1.08005 * 119.99432 * 6.82738 * 15 13 12 35 35 H 1.08999 * 109.67598 * 113.24227 * 17 16 15 36 36 H 1.09007 * 109.69926 * 352.73489 * 17 16 15 37 37 H 1.09003 * 109.59007 * 190.78833 * 18 17 16 38 38 H 1.08998 * 109.70480 * 70.42968 * 18 17 16 39 39 H 1.09000 * 109.47238 * 300.00113 * 24 23 22 40 40 H 1.09002 * 109.47187 * 60.00202 * 24 23 22 41 41 H 1.08997 * 109.47080 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.47091 * 180.02562 * 25 23 22 43 43 H 1.09002 * 109.46955 * 299.99422 * 25 23 22 44 44 H 1.08995 * 109.47464 * 59.99420 * 25 23 22 45 45 H 1.09002 * 109.47525 * 300.00195 * 26 23 22 46 46 H 1.09002 * 109.47027 * 60.00335 * 26 23 22 47 47 H 1.09002 * 109.47476 * 179.97438 * 26 23 22 48 48 H 1.09000 * 109.58276 * 61.89319 * 27 19 18 49 49 H 1.08998 * 109.58836 * 182.31732 * 27 19 18 50 50 H 1.08997 * 109.68013 * 246.75210 * 28 16 15 51 51 H 1.08998 * 109.67525 * 7.25774 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 2.1382 -0.8592 3.5564 8 14 0.6260 1.2796 2.6541 9 1 -0.8020 0.8742 2.6994 10 1 0.9773 1.9951 3.9072 11 1 0.8491 2.1772 1.4923 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1620 -2.4116 15 6 2.6367 -0.7116 -3.5585 16 6 2.8930 -0.0220 -4.6663 17 6 3.1035 -0.7284 -5.9876 18 6 4.4337 -0.2529 -6.5852 19 7 4.4685 1.2149 -6.5532 20 6 4.6388 1.9178 -7.6905 21 8 4.7653 1.3371 -8.7504 22 8 4.6700 3.2632 -7.6521 23 6 4.8574 3.9546 -8.9152 24 6 3.7141 3.5967 -9.8669 25 6 6.1897 3.5300 -9.5361 26 6 4.8652 5.4653 -8.6734 27 6 4.3212 1.9080 -5.2668 28 6 2.9818 1.4880 -4.6360 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.9042 -0.5276 4.4375 33 1 2.2490 -1.6317 -1.1528 34 1 2.7882 -1.7808 -3.5407 35 1 2.2875 -0.4849 -6.6680 36 1 3.1378 -1.8060 -5.8267 37 1 4.5154 -0.5978 -7.6160 38 1 5.2627 -0.6509 -6.0000 39 1 3.7082 2.5205 -10.0392 40 1 2.7649 3.8991 -9.4246 41 1 3.8550 4.1153 -10.8152 42 1 6.3306 4.0494 -10.4841 43 1 7.0042 3.7850 -8.8581 44 1 6.1838 2.4538 -9.7084 45 1 3.9158 5.7674 -8.2312 46 1 5.6795 5.7205 -7.9952 47 1 5.0063 5.9843 -9.6215 48 1 5.1425 1.6302 -4.6061 49 1 4.3288 2.9857 -5.4294 50 1 2.1558 1.9157 -5.2042 51 1 2.9376 1.8376 -3.6046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293040423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:40 Heat of formation + Delta-G solvation = -114.075739 kcal Electronic energy + Delta-G solvation = -30039.782219 eV Core-core repulsion = 25939.184744 eV Total energy + Delta-G solvation = -4100.597475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.97349 -40.87707 -39.41996 -37.69059 -36.81149 -35.36416 -34.42208 -34.38715 -32.30642 -31.94086 -29.51164 -28.34789 -28.29000 -27.21548 -25.56680 -24.65894 -23.56190 -22.42107 -21.35264 -20.71898 -19.88091 -19.15100 -18.37369 -17.75867 -17.55872 -17.33613 -17.14318 -16.30845 -16.12760 -15.88411 -15.58220 -15.52039 -15.06334 -15.04946 -14.80577 -14.75822 -14.44278 -14.32871 -14.10574 -14.03339 -13.63142 -13.34577 -13.21632 -13.09096 -12.96774 -12.89666 -12.85504 -12.75974 -12.47284 -12.36823 -12.25801 -12.18857 -12.10157 -11.87854 -11.57868 -11.38236 -11.26308 -11.03950 -10.86632 -10.42545 -10.37596 -9.74725 -9.55341 -8.37138 -6.42804 0.40075 1.13355 1.28269 1.36276 1.45769 1.72742 2.26916 2.41706 2.56625 2.77434 2.99357 3.69528 3.72669 3.77105 3.81278 3.95947 3.97797 4.06358 4.20757 4.34583 4.39806 4.44500 4.48759 4.56557 4.58937 4.62849 4.64688 4.73055 4.75119 4.76809 4.77645 4.84969 4.88543 4.93674 4.96336 5.01481 5.11278 5.13547 5.29124 5.30046 5.34526 5.38832 5.45156 5.46386 5.53796 5.64575 5.78670 6.17083 6.25834 6.59421 6.95160 7.20987 7.24111 7.52147 8.78037 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021606 B = 0.002176 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.655133 B =12865.697309 C =13516.775656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.242 3.758 3 H 0.024 0.976 4 C -0.532 4.532 5 H 0.056 0.944 6 C 0.027 3.973 7 N -0.934 5.934 8 Si 0.940 3.060 9 H -0.261 1.261 10 H -0.293 1.293 11 H -0.261 1.261 12 N -0.697 5.697 13 C 0.530 3.470 14 O -0.586 6.586 15 C -0.216 4.216 16 C -0.030 4.030 17 C -0.095 4.095 18 C 0.127 3.873 19 N -0.596 5.596 20 C 0.649 3.351 21 O -0.590 6.590 22 O -0.370 6.370 23 C 0.123 3.877 24 C -0.178 4.178 25 C -0.177 4.177 26 C -0.137 4.137 27 C 0.123 3.877 28 C -0.132 4.132 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.270 0.730 33 H 0.407 0.593 34 H 0.160 0.840 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.103 0.897 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.069 0.931 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 6.067 -27.734 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.137 3.863 3 H 0.042 0.958 4 C -0.570 4.570 5 H 0.075 0.925 6 C -0.173 4.173 7 N -0.573 5.573 8 Si 0.767 3.233 9 H -0.187 1.187 10 H -0.221 1.221 11 H -0.185 1.185 12 N -0.345 5.345 13 C 0.321 3.679 14 O -0.471 6.471 15 C -0.237 4.237 16 C -0.032 4.032 17 C -0.133 4.133 18 C 0.006 3.994 19 N -0.336 5.336 20 C 0.404 3.596 21 O -0.481 6.481 22 O -0.285 6.285 23 C 0.087 3.913 24 C -0.235 4.235 25 C -0.234 4.234 26 C -0.194 4.194 27 C 0.000 4.000 28 C -0.169 4.169 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.242 0.758 34 H 0.177 0.823 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.121 0.879 48 H 0.099 0.901 49 H 0.114 0.886 50 H 0.088 0.912 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.395 6.757 -27.904 29.213 hybrid contribution -0.443 0.054 0.877 0.984 sum 4.952 6.811 -27.027 28.308 Atomic orbital electron populations 1.22341 0.97994 1.01573 0.99364 1.18738 0.91069 0.93240 0.83271 0.95802 1.21268 1.32222 1.13544 0.89957 0.92539 1.25572 0.96898 0.99384 0.95397 1.69976 1.46729 1.41961 0.98642 0.85992 0.79690 0.80391 0.77204 1.18713 1.22071 1.18544 1.45993 1.65027 1.14415 1.09067 1.19252 0.77948 0.86410 0.84307 1.90556 1.53545 1.17441 1.85559 1.22463 1.07745 1.01677 0.91780 1.22630 0.90487 0.95655 0.94431 1.21353 0.97929 1.01698 0.92291 1.21813 0.97868 0.75943 1.03784 1.47176 1.73924 1.07247 1.05224 1.18151 0.76042 0.81337 0.84026 1.90862 1.56988 1.71024 1.29275 1.86324 1.85466 1.17939 1.38767 1.22421 0.96370 0.92646 0.79898 1.22459 0.97340 1.03637 1.00090 1.22450 0.95400 1.03479 1.02091 1.21889 1.03467 0.89760 1.04302 1.21892 0.97083 0.97969 0.83016 1.21922 0.97042 0.93103 1.04867 0.91795 0.94198 0.93566 0.92094 0.75764 0.82283 0.89408 0.86247 0.88072 0.89000 0.91724 0.92423 0.89037 0.89068 0.92146 0.91722 0.91592 0.91340 0.87859 0.90120 0.88570 0.91209 0.87246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.67 8.96 71.98 0.65 -6.02 16 2 C 0.24 11.31 2.15 44.24 0.10 11.40 16 3 H 0.02 1.25 6.63 -2.39 -0.02 1.23 16 4 C -0.53 -28.71 9.31 25.60 0.24 -28.47 16 5 H 0.06 3.24 7.98 -2.91 -0.02 3.22 16 6 C 0.03 1.52 5.45 84.65 0.46 1.98 16 7 N -0.93 -55.74 13.96 21.44 0.30 -55.44 16 8 Si 0.94 44.50 24.37 68.60 1.67 46.17 16 9 H -0.26 -11.66 6.87 99.48 0.68 -10.98 16 10 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.26 -12.22 6.53 99.48 0.65 -11.57 16 12 N -0.70 -26.59 5.07 -449.72 -2.28 -28.86 16 13 C 0.53 18.72 7.58 86.57 0.66 19.38 16 14 O -0.59 -24.44 12.90 -4.10 -0.05 -24.49 16 15 C -0.22 -5.31 9.65 23.43 0.23 -5.08 16 16 C -0.03 -0.66 5.34 -17.24 -0.09 -0.75 16 17 C -0.10 -1.45 6.21 30.17 0.19 -1.26 16 18 C 0.13 2.06 6.44 86.44 0.56 2.62 16 19 N -0.60 -12.44 2.90 -947.83 -2.75 -15.19 16 20 C 0.65 15.47 7.73 129.79 1.00 16.47 16 21 O -0.59 -15.71 11.26 19.79 0.22 -15.48 16 22 O -0.37 -8.23 8.49 -55.41 -0.47 -8.70 16 23 C 0.12 2.10 1.13 -10.79 -0.01 2.09 16 24 C -0.18 -2.98 8.37 71.98 0.60 -2.38 16 25 C -0.18 -2.85 8.37 71.98 0.60 -2.25 16 26 C -0.14 -1.62 8.85 71.98 0.64 -0.98 16 27 C 0.12 2.60 6.49 86.61 0.56 3.16 16 28 C -0.13 -3.34 5.50 30.34 0.17 -3.17 16 29 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.04 1.76 3.27 -2.39 -0.01 1.75 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 33 H 0.41 13.52 8.52 -92.70 -0.79 12.73 16 34 H 0.16 2.81 7.97 -2.91 -0.02 2.78 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.12 1.18 7.92 -2.38 -0.02 1.16 16 37 H 0.10 1.69 6.96 -2.39 -0.02 1.68 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 1.37 5.88 -2.39 -0.01 1.35 16 45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.10 2.02 6.87 -2.39 -0.02 2.00 16 50 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.11 3.52 4.78 -16.42 -0.08 3.45 16 Total: -1.00 -70.23 393.81 3.18 -67.06 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.00 Total: 28.19 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 6.54 Total: 6.75 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -4.73 Total: -99.50 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -0.30 Total: -48.67 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.67 Total: 46.17 kcal Total: -70.23 3.18 -67.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293040423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.020 kcal (2) G-P(sol) polarization free energy of solvation -70.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds