Wall clock time and date at job start Tue Mar 31 2020 21:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46651 * 2 1 4 4 C 1.50700 * 109.46738 * 119.99894 * 2 1 3 5 5 H 1.07993 * 120.00036 * 32.90767 * 4 2 1 6 6 C 1.37879 * 119.99404 * 212.90132 * 4 2 1 7 7 N 1.31512 * 120.00133 * 352.78709 * 6 4 2 8 8 Si 1.86802 * 119.99680 * 172.79041 * 6 4 2 9 9 H 1.48497 * 109.46993 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47110 * 119.99932 * 8 6 4 11 11 H 1.48502 * 109.46757 * 239.99859 * 8 6 4 12 12 N 1.46495 * 109.46879 * 240.00364 * 2 1 3 13 13 C 1.34771 * 120.00695 * 85.00089 * 12 2 1 14 14 O 1.21282 * 119.99891 * 4.85948 * 13 12 2 15 15 C 1.50699 * 120.00176 * 184.86395 * 13 12 2 16 16 C 1.52993 * 110.43647 * 63.05916 * 15 13 12 17 17 C 1.50701 * 109.47636 * 59.76608 * 16 15 13 18 18 O 1.21282 * 119.99324 * 3.34417 * 17 16 15 19 19 N 1.34776 * 120.00440 * 183.33756 * 17 16 15 20 20 C 1.47151 * 120.98121 * 359.72739 * 19 17 16 21 21 C 1.53710 * 108.16556 * 129.42841 * 20 19 17 22 22 O 1.42959 * 109.14759 * 52.53241 * 21 20 19 23 23 C 1.42961 * 114.16861 * 297.29480 * 22 21 20 24 24 C 1.47147 * 120.98280 * 179.97438 * 19 17 16 25 25 C 1.54886 * 110.48597 * 300.51110 * 15 13 12 26 26 C 1.55233 * 102.59112 * 279.18921 * 25 15 13 27 27 C 1.54266 * 104.23228 * 322.08673 * 26 25 15 28 28 C 1.53869 * 106.60046 * 23.60634 * 27 26 25 29 29 H 1.08999 * 109.46906 * 295.02314 * 1 2 3 30 30 H 1.09000 * 109.47032 * 55.02142 * 1 2 3 31 31 H 1.08999 * 109.47337 * 175.02286 * 1 2 3 32 32 H 0.96996 * 120.00364 * 4.49538 * 7 6 4 33 33 H 0.97008 * 119.99542 * 264.99803 * 12 2 1 34 34 H 1.08999 * 109.47237 * 179.77172 * 16 15 13 35 35 H 1.08998 * 109.47029 * 299.76655 * 16 15 13 36 36 H 1.09002 * 109.67773 * 249.20855 * 20 19 17 37 37 H 1.09003 * 109.67977 * 9.75191 * 20 19 17 38 38 H 1.09003 * 109.65440 * 292.57131 * 21 20 19 39 39 H 1.08997 * 109.48280 * 172.39608 * 21 20 19 40 40 H 1.09006 * 109.50757 * 302.64956 * 23 22 21 41 41 H 1.09001 * 109.55116 * 182.52847 * 23 22 21 42 42 H 1.09001 * 109.68206 * 350.24208 * 24 19 17 43 43 H 1.08996 * 109.67926 * 110.75548 * 24 19 17 44 44 H 1.09002 * 110.75489 * 37.58539 * 25 15 13 45 45 H 1.08998 * 110.75677 * 160.94861 * 25 15 13 46 46 H 1.08998 * 110.46977 * 203.39295 * 26 25 15 47 47 H 1.08998 * 110.46859 * 80.77592 * 26 25 15 48 48 H 1.09000 * 110.02820 * 264.32503 * 27 26 25 49 49 H 1.08996 * 110.03101 * 142.89828 * 27 26 25 50 50 H 1.09003 * 110.03713 * 240.71800 * 28 27 26 51 51 H 1.09004 * 110.03249 * 119.28493 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 1.4720 -1.5358 1.6440 6 6 3.2073 -0.3065 1.8282 7 7 3.9620 0.6011 1.2484 8 14 3.7273 -1.0487 3.4617 9 1 2.7122 -2.0395 3.9008 10 1 5.0412 -1.7223 3.3035 11 1 3.8417 0.0264 4.4798 12 7 2.0183 -0.6905 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.9435 1.1769 -2.3916 15 6 2.5439 -0.7515 -3.6125 16 6 1.4799 -1.7853 -3.9862 17 6 0.1623 -1.0903 -4.2145 18 8 0.0956 0.1189 -4.1501 19 7 -0.9417 -1.8125 -4.4904 20 6 -0.8841 -3.2801 -4.5798 21 6 -1.9992 -3.8584 -3.6939 22 8 -3.2431 -3.2496 -4.0487 23 6 -3.2871 -1.8375 -3.8297 24 6 -2.2392 -1.1562 -4.7165 25 6 3.9221 -1.4340 -3.4289 26 6 4.9137 -0.2640 -3.6690 27 6 4.2687 0.5522 -4.8080 28 6 2.7619 0.2423 -4.7722 29 1 -0.3633 0.4347 0.9312 30 1 -0.3633 0.5891 -0.8420 31 1 -0.3634 -1.0238 -0.0892 32 1 3.6611 1.0338 0.4341 33 1 2.2490 -1.6318 -1.1526 34 1 1.7803 -2.3029 -4.8973 35 1 1.3743 -2.5072 -3.1764 36 1 -1.0343 -3.5911 -5.6137 37 1 0.0858 -3.6316 -4.2275 38 1 -1.7789 -3.6528 -2.6463 39 1 -2.0640 -4.9355 -3.8477 40 1 -3.0716 -1.6246 -2.7826 41 1 -4.2782 -1.4601 -4.0814 42 1 -2.1672 -0.1006 -4.4547 43 1 -2.5235 -1.2561 -5.7639 44 1 4.0255 -1.8303 -2.4188 45 1 4.0655 -2.2204 -4.1700 46 1 5.8868 -0.6463 -3.9773 47 1 5.0095 0.3450 -2.7701 48 1 4.6891 0.2510 -5.7675 49 1 4.4349 1.6170 -4.6448 50 1 2.4510 -0.2093 -5.7143 51 1 2.1968 1.1567 -4.5915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356421221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:30 Heat of formation + Delta-G solvation = -131.475601 kcal Electronic energy + Delta-G solvation = -32404.918566 eV Core-core repulsion = 28303.566576 eV Total energy + Delta-G solvation = -4101.351990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73921 -39.55336 -38.04892 -36.66051 -34.84784 -34.65185 -32.45481 -31.95669 -31.14567 -29.35478 -28.22929 -28.09627 -25.91256 -24.67351 -24.18995 -22.50290 -22.21606 -20.65479 -20.06202 -19.35674 -18.41549 -17.33010 -17.19351 -16.61939 -16.26032 -15.85789 -15.54272 -15.34507 -15.19432 -15.01381 -14.66011 -14.10332 -13.85237 -13.77968 -13.69776 -13.38608 -13.11094 -12.87551 -12.75970 -12.62649 -12.08229 -12.02764 -11.75241 -11.64600 -11.30946 -11.05375 -11.01421 -10.96508 -10.91675 -10.84587 -10.79888 -10.71210 -10.54065 -10.38785 -10.21476 -10.12125 -9.96417 -9.52635 -8.85068 -8.67692 -8.66450 -8.43662 -7.64663 -6.50550 -4.28926 2.69158 2.76353 3.36170 3.39256 3.53169 3.54215 3.68413 4.23960 4.39470 4.42604 4.46490 4.69592 4.74180 4.80675 4.87409 4.90742 4.99665 5.01829 5.20679 5.27856 5.33541 5.34974 5.38243 5.44646 5.51868 5.57688 5.64357 5.68300 5.80193 5.86187 5.96633 6.01434 6.12832 6.25737 6.28693 6.33806 6.39619 6.50843 6.58059 6.61697 6.69355 6.80708 6.87904 7.13366 7.25928 7.32567 7.81134 8.01642 8.23361 8.31546 8.68582 8.93687 9.44981 9.51595 10.87974 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010208 B = 0.004521 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.189704 B = 6192.435763 C = 7854.651706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.239 3.761 3 H 0.054 0.946 4 C -0.608 4.608 5 H 0.053 0.947 6 C 0.031 3.969 7 N -0.891 5.891 8 Si 1.074 2.926 9 H -0.288 1.288 10 H -0.287 1.287 11 H -0.285 1.285 12 N -0.711 5.711 13 C 0.519 3.481 14 O -0.541 6.541 15 C -0.071 4.071 16 C -0.123 4.123 17 C 0.510 3.490 18 O -0.500 6.500 19 N -0.624 5.624 20 C 0.074 3.926 21 C 0.045 3.955 22 O -0.381 6.381 23 C 0.047 3.953 24 C 0.079 3.921 25 C -0.112 4.112 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.099 4.099 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.032 0.968 32 H 0.279 0.721 33 H 0.380 0.620 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.053 0.947 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 -11.096 -14.095 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.139 3.861 3 H 0.071 0.929 4 C -0.647 4.647 5 H 0.072 0.928 6 C -0.178 4.178 7 N -0.525 5.525 8 Si 0.902 3.098 9 H -0.214 1.214 10 H -0.213 1.213 11 H -0.211 1.211 12 N -0.361 5.361 13 C 0.303 3.697 14 O -0.418 6.418 15 C -0.075 4.075 16 C -0.163 4.163 17 C 0.298 3.702 18 O -0.373 6.373 19 N -0.362 5.362 20 C -0.050 4.050 21 C -0.032 4.032 22 O -0.299 6.299 23 C -0.030 4.030 24 C -0.043 4.043 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.159 4.159 28 C -0.136 4.136 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.213 0.787 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.071 0.929 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.022 -9.610 -13.008 17.258 hybrid contribution -0.943 -0.565 -1.061 1.528 sum -6.966 -10.175 -14.069 18.708 Atomic orbital electron populations 1.22001 0.99090 0.99021 0.99493 1.18813 0.89507 0.95175 0.82586 0.92854 1.22101 1.11407 1.20266 1.10925 0.92823 1.25972 0.92959 0.95968 1.02911 1.70676 1.36713 1.24458 1.20681 0.83486 0.75650 0.75803 0.74868 1.21404 1.21300 1.21144 1.47474 1.65505 1.13230 1.09882 1.19987 0.77465 0.87835 0.84364 1.90580 1.50814 1.14944 1.85460 1.21499 0.94287 0.95352 0.96372 1.21746 0.92148 0.98892 1.03494 1.20761 0.85206 0.87964 0.76280 1.90836 1.84858 1.13351 1.48257 1.48151 1.08779 1.06693 1.72565 1.22500 1.00890 0.80375 1.01210 1.23069 0.83879 0.98098 0.98187 1.87939 1.34308 1.20976 1.86711 1.22995 0.99697 0.81100 0.99221 1.22199 0.82795 0.99442 0.99913 1.22637 0.92666 0.97559 1.02148 1.22376 0.97668 0.96695 0.99303 1.22108 0.95581 1.00350 0.97851 1.22067 0.96062 1.00502 0.94998 0.93119 0.95148 0.94884 0.90893 0.78727 0.88412 0.88792 0.90566 0.88661 0.92213 0.87650 0.92344 0.87695 0.88026 0.91036 0.90669 0.91062 0.91812 0.91046 0.92533 0.91902 0.92865 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.47 37.16 0.35 -2.82 16 2 C 0.24 6.10 2.38 -69.08 -0.16 5.94 16 3 H 0.05 1.59 5.97 -51.93 -0.31 1.28 16 4 C -0.61 -16.19 8.49 -34.44 -0.29 -16.48 16 5 H 0.05 1.41 7.82 -52.49 -0.41 1.00 16 6 C 0.03 0.84 5.45 -17.82 -0.10 0.75 16 7 N -0.89 -26.35 13.62 55.43 0.76 -25.60 16 8 Si 1.07 24.10 29.91 -169.99 -5.08 19.01 16 9 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.71 -15.72 4.84 -54.93 -0.27 -15.99 16 13 C 0.52 11.24 4.91 -10.99 -0.05 11.19 16 14 O -0.54 -14.15 14.38 -8.55 -0.12 -14.27 16 15 C -0.07 -1.16 0.41 -154.00 -0.06 -1.22 16 16 C -0.12 -1.59 3.04 -27.89 -0.08 -1.67 16 17 C 0.51 7.77 7.20 -10.99 -0.08 7.69 16 18 O -0.50 -9.88 12.39 -8.55 -0.11 -9.98 16 19 N -0.62 -7.59 3.01 -172.05 -0.52 -8.11 16 20 C 0.07 0.63 6.58 -3.32 -0.02 0.61 16 21 C 0.05 0.40 7.00 37.53 0.26 0.66 16 22 O -0.38 -4.10 10.74 -35.23 -0.38 -4.47 16 23 C 0.05 0.49 6.98 37.29 0.26 0.75 16 24 C 0.08 0.91 6.63 -3.56 -0.02 0.88 16 25 C -0.11 -1.61 5.79 -24.55 -0.14 -1.75 16 26 C -0.12 -1.89 6.62 -24.89 -0.16 -2.06 16 27 C -0.12 -1.82 6.80 -25.62 -0.17 -1.99 16 28 C -0.10 -1.62 4.57 -25.61 -0.12 -1.74 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.28 8.57 6.65 -40.82 -0.27 8.30 16 33 H 0.38 7.64 7.81 -40.82 -0.32 7.32 16 34 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.09 1.09 7.39 -51.93 -0.38 0.71 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.66 6.02 -51.93 -0.31 0.35 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.35 7.08 -51.93 -0.37 0.99 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.16 7.26 -51.93 -0.38 0.78 16 45 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.05 0.76 7.83 -51.93 -0.41 0.36 16 51 H 0.09 1.92 6.08 -51.93 -0.32 1.60 16 LS Contribution 394.43 15.07 5.94 5.94 Total: -1.00 -34.81 394.43 -8.99 -43.80 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -8.60 Total: 10.95 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.60 Total: -1.28 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.03 Total: -49.70 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.61 Total: -28.73 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.08 Total: 19.01 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.81 -8.99 -43.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356421221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.677 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds