Wall clock time and date at job start Tue Mar 31 2020 21:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47169 * 2 1 4 4 C 1.50707 * 109.47131 * 240.00105 * 2 1 3 5 5 H 1.07992 * 119.99911 * 275.00345 * 4 2 1 6 6 C 1.37882 * 119.99881 * 95.00365 * 4 2 1 7 7 N 1.31509 * 119.99984 * 184.91687 * 6 4 2 8 8 Si 1.86797 * 119.99809 * 4.91271 * 6 4 2 9 9 H 1.48499 * 109.47388 * 84.83463 * 8 6 4 10 10 H 1.48505 * 109.46979 * 204.83367 * 8 6 4 11 11 H 1.48497 * 109.47715 * 324.83440 * 8 6 4 12 12 N 1.46494 * 109.47155 * 120.00129 * 2 1 3 13 13 C 1.34777 * 120.00211 * 275.00081 * 12 2 1 14 14 O 1.21281 * 119.99551 * 0.02562 * 13 12 2 15 15 C 1.50695 * 120.00266 * 179.97438 * 13 12 2 16 16 H 1.09006 * 115.59347 * 325.84370 * 15 13 12 17 17 C 1.53225 * 117.52902 * 111.68794 * 15 13 12 18 18 C 1.51925 * 117.52972 * 180.02562 * 15 13 12 19 19 C 1.54160 * 121.74844 * 3.75226 * 18 15 13 20 20 C 1.55094 * 101.42830 * 177.96642 * 19 18 15 21 21 N 1.47508 * 104.99353 * 324.08270 * 20 19 18 22 22 C 1.34775 * 125.65165 * 203.98665 * 21 20 19 23 23 O 1.21511 * 120.00327 * 180.02562 * 22 21 20 24 24 O 1.34638 * 119.99943 * 0.02562 * 22 21 20 25 25 C 1.45200 * 117.00533 * 180.02562 * 24 22 21 26 26 C 1.52994 * 109.47132 * 59.99342 * 25 24 22 27 27 C 1.53005 * 109.46488 * 299.99984 * 25 24 22 28 28 C 1.52998 * 109.47355 * 179.97438 * 25 24 22 29 29 C 1.47291 * 108.70568 * 24.24486 * 21 20 19 30 30 H 1.09002 * 109.47133 * 55.03655 * 1 2 3 31 31 H 1.09002 * 109.47170 * 175.02983 * 1 2 3 32 32 H 1.09000 * 109.47119 * 295.03322 * 1 2 3 33 33 H 0.97002 * 120.00058 * 179.97438 * 7 6 4 34 34 H 0.97008 * 120.00005 * 94.99474 * 12 2 1 35 35 H 1.08994 * 117.52334 * 0.02562 * 17 15 13 36 36 H 1.09000 * 117.52917 * 214.81741 * 17 15 13 37 37 H 1.09005 * 111.03769 * 59.93345 * 19 18 15 38 38 H 1.09006 * 111.03792 * 296.00489 * 19 18 15 39 39 H 1.09001 * 110.34312 * 205.19871 * 20 19 18 40 40 H 1.08998 * 110.33861 * 82.95758 * 20 19 18 41 41 H 1.09003 * 109.47717 * 300.00723 * 26 25 24 42 42 H 1.09004 * 109.47278 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.46819 * 60.00553 * 26 25 24 44 44 H 1.09004 * 109.46792 * 179.97438 * 27 25 24 45 45 H 1.08998 * 109.47295 * 299.99306 * 27 25 24 46 46 H 1.08993 * 109.47524 * 59.99784 * 27 25 24 47 47 H 1.08996 * 109.47217 * 299.99297 * 28 25 24 48 48 H 1.08994 * 109.46940 * 60.00072 * 28 25 24 49 49 H 1.09004 * 109.46914 * 179.97438 * 28 25 24 50 50 H 1.08999 * 109.97408 * 117.23989 * 29 21 20 51 51 H 1.09002 * 109.97201 * 238.50847 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2291 6 6 2.3604 0.0122 -2.3581 7 7 2.7060 -0.6130 -3.4623 8 14 2.3136 1.8791 -2.3173 9 1 3.5991 2.3949 -1.7820 10 1 2.1059 2.3992 -3.6927 11 1 1.1987 2.3276 -1.4450 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8581 1.1583 2.4117 15 6 2.6488 -0.7289 3.5877 16 1 2.3538 -1.7741 3.6811 17 6 4.0295 -0.3324 4.1209 18 6 2.7716 0.0827 4.8661 19 6 2.3206 1.5550 4.9388 20 6 2.6007 1.8891 6.4272 21 7 2.2834 0.6505 7.1626 22 6 1.9382 0.5757 8.4633 23 8 1.6978 -0.5036 8.9671 24 8 1.8599 1.6970 9.2045 25 6 1.4830 1.5411 10.5981 26 6 2.5057 0.6506 11.3064 27 6 0.0987 0.8948 10.6826 28 6 1.4478 2.9135 11.2735 29 6 2.4122 -0.4918 6.2418 30 1 -0.3633 0.5889 -0.8422 31 1 -0.3633 -1.0238 -0.0890 32 1 -0.3633 0.4348 0.9311 33 1 2.9364 -0.1047 -4.2556 34 1 2.2490 -1.6319 1.1525 35 1 4.5742 0.4426 3.5817 36 1 4.6424 -1.1168 4.5650 37 1 1.2592 1.6509 4.7095 38 1 2.9200 2.1810 4.2777 39 1 1.9570 2.7031 6.7605 40 1 3.6491 2.1535 6.5652 41 1 2.5313 -0.3272 10.8253 42 1 2.2225 0.5332 12.3525 43 1 3.4919 1.1110 11.2461 44 1 -0.1840 0.7773 11.7288 45 1 -0.6299 1.5292 10.1780 46 1 0.1242 -0.0829 10.2016 47 1 2.4341 3.3735 11.2133 48 1 0.7194 3.5481 10.7689 49 1 1.1645 2.7964 12.3195 50 1 3.2010 -1.1606 6.5861 51 1 1.4665 -1.0306 6.1824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368718192.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:58 Heat of formation + Delta-G solvation = -92.539942 kcal Electronic energy + Delta-G solvation = -29997.861666 eV Core-core repulsion = 25898.198052 eV Total energy + Delta-G solvation = -4099.663613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.06390 -40.08246 -38.40951 -36.93827 -35.36022 -34.68365 -34.09030 -32.37762 -30.36705 -29.74935 -27.92680 -27.71323 -27.66575 -25.36501 -24.08653 -23.70048 -21.90470 -20.83116 -19.69364 -19.62899 -19.26878 -18.04525 -17.26811 -16.85442 -16.63040 -16.08973 -15.52464 -15.34439 -15.18807 -14.85107 -14.38296 -14.23466 -14.02341 -13.73077 -13.62956 -13.31185 -12.95563 -12.79363 -12.59903 -12.54943 -12.44749 -12.35619 -12.19321 -12.16570 -12.08860 -11.90650 -11.65523 -11.51817 -11.47366 -11.15827 -11.12551 -10.84343 -10.62308 -10.61133 -10.37849 -10.22890 -10.00370 -9.90677 -9.23480 -9.09080 -8.91610 -8.73042 -8.11694 -6.26293 -4.30094 1.84783 2.66213 2.95434 3.23158 3.31372 3.37969 3.64495 3.67980 3.88657 4.29317 4.39776 4.42202 4.45713 4.53632 4.59818 4.66608 4.80792 5.11209 5.13784 5.15204 5.19915 5.22799 5.32066 5.37512 5.39755 5.42096 5.45707 5.50691 5.55535 5.57494 5.66757 5.67611 5.76216 5.93763 5.97154 5.99431 6.04977 6.15593 6.24608 6.27635 6.31711 6.49862 6.65346 6.90471 7.16676 7.29519 7.34722 7.52580 8.11086 8.14833 8.54864 8.74427 8.95032 9.35562 10.85419 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027943 B = 0.002102 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.807051 B =13316.832752 C =13544.944442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.232 3.768 3 H 0.050 0.950 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.888 5.888 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.698 5.698 13 C 0.530 3.470 14 O -0.555 6.555 15 C -0.162 4.162 16 H 0.124 0.876 17 C -0.131 4.131 18 C -0.120 4.120 19 C -0.078 4.078 20 C 0.101 3.899 21 N -0.602 5.602 22 C 0.669 3.331 23 O -0.571 6.571 24 O -0.361 6.361 25 C 0.135 3.865 26 C -0.183 4.183 27 C -0.184 4.184 28 C -0.140 4.140 29 C 0.169 3.831 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.029 0.971 33 H 0.268 0.732 34 H 0.394 0.606 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 3.571 27.074 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.129 3.871 3 H 0.068 0.932 4 C -0.568 4.568 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.346 5.346 13 C 0.314 3.686 14 O -0.435 6.435 15 C -0.183 4.183 16 H 0.142 0.858 17 C -0.168 4.168 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.022 4.022 21 N -0.343 5.343 22 C 0.424 3.576 23 O -0.460 6.460 24 O -0.276 6.276 25 C 0.099 3.901 26 C -0.240 4.240 27 C -0.241 4.241 28 C -0.197 4.197 29 C 0.047 3.953 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.227 0.773 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.098 0.902 50 H 0.093 0.907 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.082 4.130 27.189 27.501 hybrid contribution 0.108 0.328 -0.195 0.397 sum 0.190 4.458 26.994 27.360 Atomic orbital electron populations 1.22218 0.98601 1.00573 0.99224 1.19127 0.90884 0.94304 0.82753 0.93219 1.21010 1.45242 0.95636 0.94954 0.90339 1.24954 0.93642 0.98664 0.95171 1.69881 1.44683 1.36208 1.01684 0.86877 0.79724 0.85813 0.77361 1.19887 1.21215 1.18505 1.46593 1.64379 1.13982 1.09612 1.19499 0.78292 0.86949 0.83827 1.90628 1.51819 1.15981 1.85045 1.22264 1.02446 1.00368 0.93255 0.85829 1.22982 0.89289 1.03306 1.01263 1.21424 1.02807 0.97067 0.90819 1.22195 1.03500 0.92720 0.93117 1.22557 1.00922 0.86546 0.92137 1.47132 1.70514 1.10302 1.06336 1.17419 0.76776 0.82505 0.80900 1.90894 1.55528 1.28567 1.71056 1.86312 1.82683 1.34171 1.24400 1.22075 0.95095 0.96899 0.76079 1.22513 0.98393 1.02051 1.01047 1.22518 0.95040 1.03395 1.03118 1.21854 1.03367 0.94419 1.00099 1.21114 1.02021 0.86754 0.85391 0.92954 0.93438 0.95225 0.92226 0.77257 0.87616 0.87588 0.89430 0.88679 0.90209 0.91196 0.89385 0.91175 0.92208 0.91177 0.92139 0.89363 0.91468 0.91435 0.90151 0.90747 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.47 37.16 0.35 -2.81 16 2 C 0.23 5.34 2.22 -69.08 -0.15 5.18 16 3 H 0.05 1.25 4.73 -51.93 -0.25 1.00 16 4 C -0.53 -13.93 9.05 -34.44 -0.31 -14.25 16 5 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 6 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 7 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 8 Si 0.88 21.18 26.99 -169.99 -4.59 16.59 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.26 -6.21 6.82 56.52 0.39 -5.82 16 12 N -0.70 -13.36 5.07 -54.94 -0.28 -13.64 16 13 C 0.53 9.36 7.58 -10.99 -0.08 9.27 16 14 O -0.55 -11.38 13.58 5.56 0.08 -11.30 16 15 C -0.16 -2.06 6.10 -92.20 -0.56 -2.63 16 16 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.13 -1.42 10.01 -27.13 -0.27 -1.70 16 18 C -0.12 -1.40 2.27 -154.78 -0.35 -1.75 16 19 C -0.08 -0.96 4.94 -25.02 -0.12 -1.08 16 20 C 0.10 1.07 6.93 -2.38 -0.02 1.06 16 21 N -0.60 -7.24 3.34 -176.50 -0.59 -7.82 16 22 C 0.67 8.74 7.93 54.05 0.43 9.17 16 23 O -0.57 -8.37 12.21 -19.28 -0.24 -8.61 16 24 O -0.36 -4.21 9.42 -40.32 -0.38 -4.59 16 25 C 0.14 1.25 1.13 -90.62 -0.10 1.15 16 26 C -0.18 -1.61 8.37 37.15 0.31 -1.30 16 27 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16 28 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 29 C 0.17 1.89 6.72 -3.43 -0.02 1.86 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.39 6.66 8.59 -40.82 -0.35 6.31 16 35 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.24 7.75 -51.93 -0.40 0.83 16 38 H 0.09 1.26 7.60 -51.93 -0.39 0.86 16 39 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.98 5.88 -51.93 -0.31 0.68 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 1.02 5.88 -51.93 -0.31 0.71 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 51 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 406.09 15.07 6.12 6.12 Total: -1.00 -31.63 406.09 -8.23 -39.86 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -8.76 Total: 6.06 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.37 Total: 2.35 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.09 Total: -46.47 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.54 Total: -24.50 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.59 Total: 16.59 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.63 -8.23 -39.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368718192.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.679 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds