Wall clock time and date at job start Tue Mar 31 2020 21:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47169 * 2 1 4 4 C 1.50707 * 109.47131 * 240.00105 * 2 1 3 5 5 H 1.07992 * 119.99911 * 275.00345 * 4 2 1 6 6 C 1.37882 * 119.99881 * 95.00365 * 4 2 1 7 7 N 1.31509 * 119.99984 * 184.91687 * 6 4 2 8 8 Si 1.86797 * 119.99809 * 4.91271 * 6 4 2 9 9 H 1.48499 * 109.47388 * 84.83463 * 8 6 4 10 10 H 1.48505 * 109.46979 * 204.83367 * 8 6 4 11 11 H 1.48497 * 109.47715 * 324.83440 * 8 6 4 12 12 N 1.46494 * 109.47155 * 120.00129 * 2 1 3 13 13 C 1.34777 * 120.00211 * 275.00081 * 12 2 1 14 14 O 1.21281 * 119.99551 * 0.02562 * 13 12 2 15 15 C 1.50695 * 120.00266 * 179.97438 * 13 12 2 16 16 H 1.09006 * 115.59347 * 325.84370 * 15 13 12 17 17 C 1.53225 * 117.52902 * 111.68794 * 15 13 12 18 18 C 1.51925 * 117.52972 * 180.02562 * 15 13 12 19 19 C 1.54160 * 121.74844 * 3.75226 * 18 15 13 20 20 C 1.55094 * 101.42830 * 177.96642 * 19 18 15 21 21 N 1.47508 * 104.99353 * 324.08270 * 20 19 18 22 22 C 1.34775 * 125.65165 * 203.98665 * 21 20 19 23 23 O 1.21511 * 120.00327 * 180.02562 * 22 21 20 24 24 O 1.34638 * 119.99943 * 0.02562 * 22 21 20 25 25 C 1.45200 * 117.00533 * 180.02562 * 24 22 21 26 26 C 1.52994 * 109.47132 * 59.99342 * 25 24 22 27 27 C 1.53005 * 109.46488 * 299.99984 * 25 24 22 28 28 C 1.52998 * 109.47355 * 179.97438 * 25 24 22 29 29 C 1.47291 * 108.70568 * 24.24486 * 21 20 19 30 30 H 1.09002 * 109.47133 * 55.03655 * 1 2 3 31 31 H 1.09002 * 109.47170 * 175.02983 * 1 2 3 32 32 H 1.09000 * 109.47119 * 295.03322 * 1 2 3 33 33 H 0.97002 * 120.00058 * 179.97438 * 7 6 4 34 34 H 0.97008 * 120.00005 * 94.99474 * 12 2 1 35 35 H 1.08994 * 117.52334 * 0.02562 * 17 15 13 36 36 H 1.09000 * 117.52917 * 214.81741 * 17 15 13 37 37 H 1.09005 * 111.03769 * 59.93345 * 19 18 15 38 38 H 1.09006 * 111.03792 * 296.00489 * 19 18 15 39 39 H 1.09001 * 110.34312 * 205.19871 * 20 19 18 40 40 H 1.08998 * 110.33861 * 82.95758 * 20 19 18 41 41 H 1.09003 * 109.47717 * 300.00723 * 26 25 24 42 42 H 1.09004 * 109.47278 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.46819 * 60.00553 * 26 25 24 44 44 H 1.09004 * 109.46792 * 179.97438 * 27 25 24 45 45 H 1.08998 * 109.47295 * 299.99306 * 27 25 24 46 46 H 1.08993 * 109.47524 * 59.99784 * 27 25 24 47 47 H 1.08996 * 109.47217 * 299.99297 * 28 25 24 48 48 H 1.08994 * 109.46940 * 60.00072 * 28 25 24 49 49 H 1.09004 * 109.46914 * 179.97438 * 28 25 24 50 50 H 1.08999 * 109.97408 * 117.23989 * 29 21 20 51 51 H 1.09002 * 109.97201 * 238.50847 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2291 6 6 2.3604 0.0122 -2.3581 7 7 2.7060 -0.6130 -3.4623 8 14 2.3136 1.8791 -2.3173 9 1 3.5991 2.3949 -1.7820 10 1 2.1059 2.3992 -3.6927 11 1 1.1987 2.3276 -1.4450 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8581 1.1583 2.4117 15 6 2.6488 -0.7289 3.5877 16 1 2.3538 -1.7741 3.6811 17 6 4.0295 -0.3324 4.1209 18 6 2.7716 0.0827 4.8661 19 6 2.3206 1.5550 4.9388 20 6 2.6007 1.8891 6.4272 21 7 2.2834 0.6505 7.1626 22 6 1.9382 0.5757 8.4633 23 8 1.6978 -0.5036 8.9671 24 8 1.8599 1.6970 9.2045 25 6 1.4830 1.5411 10.5981 26 6 2.5057 0.6506 11.3064 27 6 0.0987 0.8948 10.6826 28 6 1.4478 2.9135 11.2735 29 6 2.4122 -0.4918 6.2418 30 1 -0.3633 0.5889 -0.8422 31 1 -0.3633 -1.0238 -0.0890 32 1 -0.3633 0.4348 0.9311 33 1 2.9364 -0.1047 -4.2556 34 1 2.2490 -1.6319 1.1525 35 1 4.5742 0.4426 3.5817 36 1 4.6424 -1.1168 4.5650 37 1 1.2592 1.6509 4.7095 38 1 2.9200 2.1810 4.2777 39 1 1.9570 2.7031 6.7605 40 1 3.6491 2.1535 6.5652 41 1 2.5313 -0.3272 10.8253 42 1 2.2225 0.5332 12.3525 43 1 3.4919 1.1110 11.2461 44 1 -0.1840 0.7773 11.7288 45 1 -0.6299 1.5292 10.1780 46 1 0.1242 -0.0829 10.2016 47 1 2.4341 3.3735 11.2133 48 1 0.7194 3.5481 10.7689 49 1 1.1645 2.7964 12.3195 50 1 3.2010 -1.1606 6.5861 51 1 1.4665 -1.0306 6.1824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368718192.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:57 Heat of formation + Delta-G solvation = -112.275346 kcal Electronic energy + Delta-G solvation = -29998.717457 eV Core-core repulsion = 25898.198052 eV Total energy + Delta-G solvation = -4100.519404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.98811 -41.20609 -39.61006 -37.91496 -36.73358 -36.01955 -34.86992 -34.34574 -31.75778 -31.03381 -28.86961 -28.35540 -28.28192 -27.33307 -25.35464 -24.62122 -22.73479 -22.35319 -21.20453 -20.51226 -20.35417 -19.26998 -18.71234 -17.80195 -17.59541 -17.43425 -17.17526 -16.31309 -16.12121 -15.86515 -15.84210 -15.31647 -15.06526 -14.95188 -14.68586 -14.55546 -14.38907 -14.30064 -13.87540 -13.41931 -13.34028 -13.29720 -13.21892 -13.03079 -12.95270 -12.90354 -12.86332 -12.78518 -12.77603 -12.43761 -12.42778 -12.25442 -12.06038 -11.87807 -11.40074 -11.38542 -11.22471 -11.13671 -10.97951 -10.84115 -10.49476 -9.83435 -9.75216 -8.38158 -6.44284 0.99265 1.30035 1.34486 1.44701 1.66550 1.71225 2.27470 2.37782 2.78015 2.84861 3.02219 3.40356 3.55636 3.72676 3.76004 3.80383 3.82105 3.95453 4.14834 4.26702 4.39860 4.41477 4.48613 4.55149 4.59264 4.62581 4.68550 4.72071 4.73957 4.77281 4.81414 4.84274 4.85087 4.88588 4.90059 5.02352 5.07044 5.12305 5.12767 5.20110 5.26296 5.28875 5.34688 5.38907 5.44536 5.46211 5.78894 6.14097 6.36396 6.61241 6.96603 7.20902 7.21984 7.51949 8.76790 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027943 B = 0.002102 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.807051 B =13316.832752 C =13544.944442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.236 3.764 3 H 0.032 0.968 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.031 3.969 7 N -0.930 5.930 8 Si 0.929 3.071 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.256 1.256 12 N -0.702 5.702 13 C 0.527 3.473 14 O -0.585 6.585 15 C -0.169 4.169 16 H 0.151 0.849 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.076 4.076 20 C 0.109 3.891 21 N -0.606 5.606 22 C 0.664 3.336 23 O -0.591 6.591 24 O -0.366 6.366 25 C 0.123 3.877 26 C -0.178 4.178 27 C -0.180 4.180 28 C -0.135 4.135 29 C 0.171 3.829 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.270 0.730 34 H 0.405 0.595 35 H 0.097 0.903 36 H 0.139 0.861 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.103 0.897 50 H 0.089 0.911 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 4.171 29.627 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.132 3.868 3 H 0.049 0.951 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.170 4.170 7 N -0.569 5.569 8 Si 0.754 3.246 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.181 1.181 12 N -0.350 5.350 13 C 0.314 3.686 14 O -0.467 6.467 15 C -0.190 4.190 16 H 0.169 0.831 17 C -0.149 4.149 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.013 4.013 21 N -0.347 5.347 22 C 0.420 3.580 23 O -0.482 6.482 24 O -0.281 6.281 25 C 0.087 3.913 26 C -0.235 4.235 27 C -0.237 4.237 28 C -0.192 4.192 29 C 0.050 3.950 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.240 0.760 35 H 0.116 0.884 36 H 0.157 0.843 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.122 0.878 50 H 0.107 0.893 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.544 4.724 29.765 30.142 hybrid contribution -0.063 0.111 -0.912 0.921 sum 0.482 4.835 28.852 29.258 Atomic orbital electron populations 1.22111 0.97371 1.01104 0.99380 1.18843 0.91738 0.93157 0.83083 0.95053 1.21197 1.44193 0.94764 0.96168 0.92623 1.25638 0.93839 1.02494 0.95008 1.69982 1.46713 1.37751 1.02456 0.86022 0.79711 0.81315 0.77567 1.19790 1.20528 1.18063 1.46339 1.64967 1.14512 1.09184 1.20220 0.77194 0.86662 0.84507 1.90618 1.52858 1.17557 1.85641 1.22192 1.04324 1.01293 0.91173 0.83106 1.23124 0.88540 1.03528 0.99699 1.21407 1.03433 0.96300 0.90589 1.22056 1.01862 0.93376 0.94091 1.22527 1.01912 0.86209 0.90641 1.47234 1.70237 1.10924 1.06266 1.17568 0.76654 0.82603 0.81186 1.90888 1.56421 1.29382 1.71558 1.86323 1.82559 1.33608 1.25615 1.22461 0.95079 0.98684 0.75121 1.22459 0.98570 1.00465 1.02007 1.22474 0.95182 1.01761 1.04272 1.21880 1.03678 0.92593 1.01057 1.21119 1.02315 0.86678 0.84853 0.93568 0.92582 0.94395 0.92075 0.75970 0.88448 0.84325 0.91695 0.89752 0.89840 0.89617 0.91991 0.88961 0.91912 0.88886 0.92296 0.92062 0.91140 0.91457 0.87797 0.89263 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 9.47 71.98 0.68 -5.26 16 2 C 0.24 10.79 2.22 44.25 0.10 10.89 16 3 H 0.03 1.57 4.73 -2.39 -0.01 1.56 16 4 C -0.52 -27.81 9.05 25.60 0.23 -27.57 16 5 H 0.06 3.14 8.06 -2.91 -0.02 3.12 16 6 C 0.03 1.69 5.47 84.66 0.46 2.16 16 7 N -0.93 -54.84 13.96 21.45 0.30 -54.55 16 8 Si 0.93 43.88 26.99 68.60 1.85 45.73 16 9 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.26 -11.82 6.82 99.48 0.68 -11.15 16 12 N -0.70 -26.29 5.07 -446.11 -2.26 -28.55 16 13 C 0.53 18.08 7.58 87.66 0.66 18.74 16 14 O -0.59 -23.79 13.58 -3.03 -0.04 -23.84 16 15 C -0.17 -3.94 6.10 -11.82 -0.07 -4.01 16 16 H 0.15 2.71 8.14 -2.38 -0.02 2.70 16 17 C -0.11 -2.11 10.01 30.33 0.30 -1.81 16 18 C -0.12 -2.48 2.27 -52.36 -0.12 -2.60 16 19 C -0.08 -1.82 4.94 31.70 0.16 -1.66 16 20 C 0.11 2.18 6.93 86.90 0.60 2.78 16 21 N -0.61 -13.76 3.34 -942.73 -3.14 -16.91 16 22 C 0.66 16.82 7.93 129.79 1.03 17.85 16 23 O -0.59 -17.15 12.21 19.81 0.24 -16.91 16 24 O -0.37 -8.16 9.42 -55.47 -0.52 -8.68 16 25 C 0.12 2.08 1.13 -10.79 -0.01 2.07 16 26 C -0.18 -2.86 8.37 71.98 0.60 -2.26 16 27 C -0.18 -3.07 8.37 71.98 0.60 -2.47 16 28 C -0.14 -1.44 8.85 71.98 0.64 -0.80 16 29 C 0.17 3.51 6.72 86.35 0.58 4.09 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.41 13.32 8.59 -92.70 -0.80 12.53 16 35 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 1.85 7.75 -2.38 -0.02 1.83 16 38 H 0.08 2.20 7.60 -2.38 -0.02 2.19 16 39 H 0.08 1.60 8.04 -2.39 -0.02 1.58 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.35 5.88 -2.39 -0.01 1.34 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 47 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.09 1.59 8.12 -2.39 -0.02 1.57 16 51 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -69.35 406.09 2.97 -66.38 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.10 Total: 27.19 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 6.45 Total: 10.13 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -5.11 Total: -100.00 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -0.32 Total: -49.42 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.85 Total: 45.73 kcal Total: -69.35 2.97 -66.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368718192.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.897 kcal (2) G-P(sol) polarization free energy of solvation -69.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds