Wall clock time and date at job start Tue Mar 31 2020 21:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34230 * 117.00161 * 2 1 4 4 O 1.20827 * 119.99991 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00026 * 179.97438 * 3 2 1 6 6 C 1.54162 * 111.07253 * 298.73948 * 5 3 2 7 7 C 1.54842 * 104.32057 * 214.25810 * 6 5 3 8 8 C 1.54849 * 102.73382 * 38.18736 * 7 6 5 9 9 C 1.54161 * 104.33128 * 321.83304 * 8 7 6 10 10 H 1.08994 * 111.79473 * 146.11533 * 9 8 7 11 11 C 1.54323 * 108.86349 * 270.15198 * 9 8 7 12 12 N 1.49950 * 103.98410 * 91.18680 * 11 9 8 13 13 C 1.46899 * 111.15725 * 158.49241 * 12 11 9 14 14 H 1.09001 * 109.47509 * 294.16297 * 13 12 11 15 15 C 1.53000 * 109.47076 * 54.16888 * 13 12 11 16 16 C 1.50706 * 109.46853 * 174.16431 * 13 12 11 17 17 O 1.21283 * 120.00066 * 0.02562 * 16 13 12 18 18 N 1.34777 * 120.00048 * 179.97438 * 16 13 12 19 19 C 1.46503 * 119.99968 * 0.02562 * 18 16 13 20 20 C 1.46496 * 120.00089 * 180.02562 * 18 16 13 21 21 C 1.50700 * 109.47125 * 90.00447 * 20 18 16 22 22 H 1.07998 * 119.99753 * 359.97438 * 21 20 18 23 23 C 1.37875 * 120.00187 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00151 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00054 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47126 * 59.99995 * 25 23 21 27 27 H 1.48506 * 109.47342 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47118 * 299.99963 * 25 23 21 29 29 C 1.48534 * 104.82897 * 38.49344 * 12 11 9 30 30 H 1.09000 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47566 * 300.00087 * 1 2 3 32 32 H 1.09003 * 109.46935 * 60.00284 * 1 2 3 33 33 H 1.09001 * 110.46338 * 95.55303 * 6 5 3 34 34 H 1.08999 * 110.57891 * 333.02205 * 6 5 3 35 35 H 1.08999 * 110.75494 * 279.88060 * 7 6 5 36 36 H 1.08999 * 110.91758 * 156.57112 * 7 6 5 37 37 H 1.08999 * 110.45718 * 203.11684 * 8 7 6 38 38 H 1.09001 * 110.45840 * 80.55089 * 8 7 6 39 39 H 1.09003 * 110.39247 * 209.32921 * 11 9 8 40 40 H 1.08991 * 110.39990 * 331.73768 * 11 9 8 41 41 H 1.09005 * 109.46471 * 186.83761 * 15 13 12 42 42 H 1.08994 * 109.46827 * 306.83787 * 15 13 12 43 43 H 1.08995 * 109.46931 * 66.84192 * 15 13 12 44 44 H 1.09003 * 109.46848 * 89.99221 * 19 18 16 45 45 H 1.08999 * 109.46895 * 209.99664 * 19 18 16 46 46 H 1.09005 * 109.46896 * 329.99983 * 19 18 16 47 47 H 1.08999 * 109.47506 * 210.00662 * 20 18 16 48 48 H 1.09001 * 109.47307 * 330.00308 * 20 18 16 49 49 H 0.96996 * 120.00160 * 180.02562 * 24 23 21 50 50 H 1.09001 * 110.39619 * 202.12505 * 29 12 11 51 51 H 1.09002 * 110.39599 * 79.72487 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1556 0.6133 1.2623 7 6 5.4075 1.4631 1.5911 8 6 4.9395 2.9020 1.2617 9 6 4.0678 2.7404 0.0005 10 1 3.2426 3.4523 -0.0150 11 6 4.9657 2.8756 -1.2473 12 7 5.3930 1.4685 -1.5404 13 6 5.8163 1.3235 -2.9396 14 1 4.9601 1.4786 -3.5962 15 6 6.8960 2.3604 -3.2559 16 6 6.3708 -0.0611 -3.1558 17 8 6.4091 -0.8495 -2.2350 18 7 6.8232 -0.4235 -4.3725 19 6 6.7763 0.5287 -5.4849 20 6 7.3617 -1.7695 -4.5828 21 6 6.2487 -2.6965 -4.9988 22 1 5.2410 -2.3206 -5.0963 23 6 6.5167 -4.0247 -5.2538 24 7 7.7436 -4.4828 -5.1335 25 14 5.1370 -5.1739 -5.7687 26 1 4.5282 -4.6820 -7.0307 27 1 5.6829 -6.5384 -5.9820 28 1 4.1032 -5.2146 -4.7035 29 6 4.1927 0.6402 -1.2589 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.4392 -0.4184 1.0545 34 1 3.4414 0.6530 2.0847 35 1 6.2468 1.1754 0.9580 36 1 5.6721 1.3747 2.6448 37 1 5.7962 3.5429 1.0533 38 1 4.3496 3.3082 2.0833 39 1 4.3946 3.2771 -2.0845 40 1 5.8233 3.5125 -1.0310 41 1 7.1232 2.3347 -4.3217 42 1 6.5369 3.3531 -2.9846 43 1 7.7970 2.1318 -2.6867 44 1 7.7033 1.1016 -5.5120 45 1 6.6568 -0.0138 -6.4227 46 1 5.9341 1.2069 -5.3475 47 1 8.1206 -1.7393 -5.3645 48 1 7.8084 -2.1309 -3.6565 49 1 7.9323 -5.4171 -5.3133 50 1 4.4814 -0.3920 -1.0606 51 1 3.4946 0.6865 -2.0947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374709058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:31 Heat of formation + Delta-G solvation = -124.770702 kcal Electronic energy + Delta-G solvation = -31745.466977 eV Core-core repulsion = 27644.405733 eV Total energy + Delta-G solvation = -4101.061244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.38451 -41.04875 -40.01272 -37.61671 -36.69913 -36.44703 -34.75796 -32.73606 -32.00288 -30.02601 -29.33343 -28.28686 -27.54504 -26.76304 -25.54130 -24.47608 -23.41806 -22.31738 -21.46336 -20.16533 -19.90413 -18.69730 -18.63333 -18.06825 -17.97369 -17.43905 -17.13670 -16.46039 -16.43629 -16.19734 -15.59512 -15.35831 -15.07771 -14.75478 -14.62237 -14.35665 -14.32143 -14.13027 -13.84123 -13.74097 -13.52082 -13.31817 -13.25013 -13.06452 -12.90457 -12.84764 -12.64507 -12.53993 -12.42476 -12.32751 -12.15863 -11.98787 -11.91413 -11.87773 -11.76194 -11.71509 -11.65442 -11.48486 -11.26223 -10.63969 -10.41697 -9.43082 -9.36532 -8.21709 -6.36630 0.95469 1.35216 1.39325 1.46606 1.60089 1.89863 2.24082 2.41070 2.93355 3.07434 3.17588 3.33704 3.51747 3.70032 3.84456 4.01920 4.05571 4.11491 4.19624 4.20342 4.24996 4.32906 4.39469 4.41434 4.48240 4.58527 4.63002 4.65606 4.71401 4.75250 4.83733 4.86869 4.92716 4.96257 4.97088 5.03358 5.05664 5.10340 5.19895 5.24736 5.25861 5.29742 5.33084 5.56158 5.57059 5.73745 5.82199 5.92681 6.07613 6.55665 6.71072 6.83751 7.29656 7.55529 8.84860 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011264 B = 0.003750 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.127610 B = 7465.730593 C = 8846.611175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.482 3.518 4 O -0.524 6.524 5 C -0.059 4.059 6 C -0.100 4.100 7 C -0.115 4.115 8 C -0.103 4.103 9 C -0.081 4.081 10 H 0.101 0.899 11 C 0.041 3.959 12 N -0.491 5.491 13 C 0.064 3.936 14 H 0.073 0.927 15 C -0.144 4.144 16 C 0.501 3.499 17 O -0.575 6.575 18 N -0.611 5.611 19 C 0.077 3.923 20 C 0.263 3.737 21 C -0.542 4.542 22 H 0.050 0.950 23 C 0.010 3.990 24 N -0.927 5.927 25 Si 0.964 3.036 26 H -0.261 1.261 27 H -0.277 1.277 28 H -0.279 1.279 29 C 0.064 3.936 30 H 0.126 0.874 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.023 0.977 48 H -0.003 1.003 49 H 0.267 0.733 50 H 0.074 0.926 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 19.113 8.893 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.325 3.675 4 O -0.413 6.413 5 C -0.061 4.061 6 C -0.138 4.138 7 C -0.152 4.152 8 C -0.141 4.141 9 C -0.100 4.100 10 H 0.119 0.881 11 C -0.085 4.085 12 N -0.216 5.216 13 C -0.048 4.048 14 H 0.091 0.909 15 C -0.201 4.201 16 C 0.288 3.712 17 O -0.454 6.454 18 N -0.343 5.343 19 C -0.065 4.065 20 C 0.142 3.858 21 C -0.581 4.581 22 H 0.068 0.932 23 C -0.189 4.189 24 N -0.567 5.567 25 Si 0.788 3.212 26 H -0.185 1.185 27 H -0.202 1.202 28 H -0.205 1.205 29 C -0.064 4.064 30 H 0.144 0.856 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.134 0.866 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.107 0.893 47 H 0.041 0.959 48 H 0.015 0.985 49 H 0.076 0.924 50 H 0.093 0.907 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.790 18.662 9.631 22.766 hybrid contribution -1.482 -1.276 -1.008 2.200 sum -10.272 17.386 8.623 21.958 Atomic orbital electron populations 1.23587 0.74591 1.05682 1.02826 1.86572 1.25269 1.33006 1.83313 1.23566 0.91693 0.81217 0.70975 1.90597 1.67311 1.36764 1.46633 1.21831 0.85686 0.99756 0.98844 1.22309 0.98100 0.99485 0.93863 1.22400 0.96609 0.94576 1.01616 1.22367 0.99043 0.97021 0.95625 1.22566 0.98167 0.92203 0.97067 0.88068 1.23676 0.99092 0.89392 0.96378 1.65318 1.30275 1.06364 1.19621 1.21762 0.99725 0.92647 0.90673 0.90914 1.22061 0.96820 0.97482 1.03777 1.21066 0.78220 0.89806 0.82082 1.90620 1.56827 1.54941 1.43016 1.48113 1.61401 1.14800 1.10032 1.22084 1.02767 0.92416 0.89270 1.18692 0.93459 0.78721 0.94926 1.21650 0.95008 0.95026 1.46379 0.93221 1.25813 0.98190 0.99587 0.95317 1.70039 1.20877 1.16005 1.49766 0.85530 0.78891 0.77827 0.78945 1.18526 1.20204 1.20461 1.22908 0.90522 0.98761 0.94248 0.85587 0.91056 0.91895 0.91864 0.90705 0.91488 0.90077 0.89166 0.90638 0.92589 0.86596 0.89111 0.88627 0.92570 0.90459 0.91758 0.89324 0.95922 0.98493 0.92397 0.90713 0.95227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.37 -9.75 10.55 -51.42 -0.54 -10.29 16 3 C 0.48 13.19 6.57 71.24 0.47 13.66 16 4 O -0.52 -15.32 15.23 21.96 0.33 -14.99 16 5 C -0.06 -1.54 0.93 -51.44 -0.05 -1.58 16 6 C -0.10 -2.44 5.82 31.62 0.18 -2.26 16 7 C -0.11 -2.42 6.56 31.85 0.21 -2.21 16 8 C -0.10 -1.76 6.28 31.62 0.20 -1.56 16 9 C -0.08 -1.68 3.47 -9.30 -0.03 -1.71 16 10 H 0.10 2.13 6.77 -2.39 -0.02 2.11 16 11 C 0.04 0.81 4.64 86.15 0.40 1.21 16 12 N -0.49 -13.83 4.23 -857.15 -3.62 -17.45 16 13 C 0.06 1.85 1.53 44.17 0.07 1.92 16 14 H 0.07 1.95 7.15 -2.39 -0.02 1.93 16 15 C -0.14 -2.98 8.67 71.98 0.62 -2.36 16 16 C 0.50 21.03 6.87 87.66 0.60 21.63 16 17 O -0.57 -29.99 14.39 -3.04 -0.04 -30.04 16 18 N -0.61 -26.04 2.86 -851.11 -2.43 -28.47 16 19 C 0.08 2.26 8.79 127.77 1.12 3.38 16 20 C 0.26 14.37 5.16 85.63 0.44 14.81 16 21 C -0.54 -31.59 9.39 25.60 0.24 -31.35 16 22 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 23 C 0.01 0.58 5.46 84.65 0.46 1.05 16 24 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 25 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 26 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 28 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 29 C 0.06 2.02 4.87 86.43 0.42 2.45 16 30 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 32 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 33 H 0.06 1.81 7.50 -2.39 -0.02 1.79 16 34 H 0.07 1.62 7.92 -2.39 -0.02 1.60 16 35 H 0.07 1.76 7.81 -2.39 -0.02 1.74 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.26 7.42 -2.39 -0.02 1.24 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.00 8.01 -2.39 -0.02 0.99 16 40 H 0.12 1.76 6.88 -2.39 -0.02 1.75 16 41 H 0.09 1.61 4.75 -2.38 -0.01 1.60 16 42 H 0.10 1.38 6.49 -2.39 -0.02 1.36 16 43 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 44 H 0.08 1.83 7.10 -2.39 -0.02 1.81 16 45 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 46 H 0.09 2.02 5.93 -2.38 -0.01 2.01 16 47 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 48 H 0.00 -0.19 7.42 -2.39 -0.02 -0.21 16 49 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 50 H 0.07 2.96 6.23 -2.39 -0.01 2.95 16 51 H 0.03 0.96 7.65 -2.39 -0.02 0.94 16 Total: -1.00 -77.94 393.07 3.48 -74.45 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.92 Total: 16.95 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 6.56 Total: 18.75 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -5.77 Total: -102.16 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -0.25 Total: -55.32 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -77.94 3.48 -74.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374709058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.318 kcal (2) G-P(sol) polarization free energy of solvation -77.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds