Wall clock time and date at job start Tue Mar 31 2020 20:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47271 * 2 1 4 4 C 1.53005 * 109.46841 * 119.99557 * 2 1 3 5 5 C 1.50700 * 109.46778 * 183.42191 * 4 2 1 6 6 H 1.07997 * 120.00569 * 5.04186 * 5 4 2 7 7 C 1.37883 * 119.99709 * 184.76775 * 5 4 2 8 8 N 1.31511 * 119.99916 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99675 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47466 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46796 * 120.00373 * 9 7 5 12 12 H 1.48501 * 109.47019 * 239.99976 * 9 7 5 13 13 N 1.46892 * 109.47179 * 239.99406 * 2 1 3 14 14 C 1.46960 * 111.00022 * 72.16101 * 13 2 1 15 15 C 1.53043 * 109.36574 * 176.81046 * 14 13 2 16 16 N 1.46961 * 109.36689 * 58.40287 * 15 14 13 17 17 C 1.46904 * 111.00119 * 176.81007 * 16 15 14 18 18 C 1.52991 * 109.47019 * 313.79850 * 17 16 15 19 19 C 1.53005 * 109.47216 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.47211 * 179.97438 * 19 18 17 21 21 C 1.42905 * 113.99459 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.46702 * 180.02562 * 21 20 19 23 23 F 1.39897 * 109.47579 * 59.99961 * 22 21 20 24 24 F 1.39902 * 109.47287 * 180.02562 * 22 21 20 25 25 F 1.39904 * 109.47167 * 300.00070 * 22 21 20 26 26 C 1.46959 * 110.87709 * 300.67641 * 16 15 14 27 27 C 1.46951 * 111.00339 * 308.36209 * 13 2 1 28 28 H 1.09002 * 109.47194 * 300.00606 * 1 2 3 29 29 H 1.08996 * 109.46993 * 60.00071 * 1 2 3 30 30 H 1.08998 * 109.47014 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47363 * 63.42609 * 4 2 1 32 32 H 1.09000 * 109.47043 * 303.42267 * 4 2 1 33 33 H 0.97005 * 119.99833 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.48765 * 296.78178 * 14 13 2 35 35 H 1.09007 * 109.48777 * 56.84280 * 14 13 2 36 36 H 1.08998 * 109.49147 * 298.43330 * 15 14 13 37 37 H 1.09002 * 109.49091 * 178.36991 * 15 14 13 38 38 H 1.09006 * 109.46654 * 73.79875 * 17 16 15 39 39 H 1.08994 * 109.46604 * 193.79592 * 17 16 15 40 40 H 1.09004 * 109.47636 * 300.00052 * 18 17 16 41 41 H 1.09004 * 109.47635 * 60.00275 * 18 17 16 42 42 H 1.09004 * 109.47010 * 300.00619 * 19 18 17 43 43 H 1.09004 * 109.46445 * 59.99728 * 19 18 17 44 44 H 1.08998 * 109.46779 * 300.00028 * 21 20 19 45 45 H 1.08995 * 109.47126 * 60.00062 * 21 20 19 46 46 H 1.09000 * 109.49167 * 299.35709 * 26 16 15 47 47 H 1.08997 * 109.48850 * 179.28622 * 26 16 15 48 48 H 1.09001 * 109.48718 * 303.15237 * 27 13 2 49 49 H 1.08999 * 109.49193 * 63.19736 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5446 -0.6482 1.2925 6 1 4.0786 -0.0700 0.5529 7 6 4.2391 -1.3149 2.2795 8 7 3.5885 -2.0149 3.1830 9 14 6.1041 -1.2237 2.3334 10 1 6.5910 -0.3780 1.2141 11 1 6.5335 -0.6299 3.6250 12 1 6.6704 -2.5905 2.2044 13 7 2.0197 -0.6926 -1.1993 14 6 1.7990 0.1200 -2.4037 15 6 2.3927 -0.5994 -3.6171 16 7 1.7655 -1.9212 -3.7550 17 6 2.2552 -2.6138 -4.9544 18 6 2.2397 -1.6495 -6.1421 19 6 2.7503 -2.3706 -7.3912 20 8 2.7352 -1.4701 -8.5007 21 6 3.1956 -2.0476 -9.7241 22 6 3.1369 -0.9990 -10.8367 23 9 3.9517 0.0866 -10.4979 24 9 3.5870 -1.5644 -12.0346 25 9 1.8179 -0.5605 -10.9952 26 6 1.9863 -2.7339 -2.5506 27 6 1.3925 -2.0144 -1.3372 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7276 -1.7650 1.2193 32 1 1.6274 -0.2439 2.1382 33 1 4.0771 -2.4836 3.8776 34 1 0.7290 0.2643 -2.5541 35 1 2.2834 1.0890 -2.2825 36 1 3.4672 -0.7193 -3.4789 37 1 2.2047 -0.0121 -4.5160 38 1 3.2737 -2.9621 -4.7824 39 1 1.6112 -3.4663 -5.1700 40 1 1.2212 -1.3011 -6.3141 41 1 2.8837 -0.7970 -5.9265 42 1 3.7688 -2.7187 -7.2190 43 1 2.1066 -3.2234 -7.6070 44 1 4.2234 -2.3888 -9.6007 45 1 2.5611 -2.8937 -9.9879 46 1 3.0562 -2.8780 -2.4002 47 1 1.5019 -3.7027 -2.6718 48 1 1.5806 -2.6016 -0.4383 49 1 0.3179 -1.8945 -1.4750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411180809.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:46 Heat of formation + Delta-G solvation = -192.251610 kcal Electronic energy + Delta-G solvation = -29820.030932 eV Core-core repulsion = 25174.186756 eV Total energy + Delta-G solvation = -4645.844176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.192 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.51554 -48.08142 -47.96220 -39.41390 -38.68258 -36.57795 -33.45944 -32.42449 -30.87167 -30.52240 -29.46206 -27.30258 -26.37816 -24.16611 -23.75818 -23.47734 -22.71198 -21.35558 -19.89385 -19.07331 -19.05344 -18.57350 -18.12738 -16.99001 -16.72641 -16.16746 -15.87911 -15.21079 -15.04907 -14.89649 -14.75444 -14.53112 -14.50932 -14.43304 -14.24082 -14.14315 -14.14010 -13.99153 -13.76324 -13.40490 -12.95944 -12.64078 -12.22728 -12.12867 -12.01077 -11.79615 -11.66703 -11.52875 -11.42952 -11.18917 -11.05013 -10.88178 -10.58471 -10.52548 -10.39605 -10.33731 -10.15244 -9.89144 -9.15039 -8.94773 -8.26119 -8.23123 -7.41666 -5.88515 -3.85677 1.98131 2.81434 3.33748 3.36995 3.44587 3.50012 3.51301 3.85816 4.11032 4.42335 4.46985 4.54214 4.57130 4.61763 4.74528 4.87347 5.00199 5.15307 5.23279 5.40614 5.47673 5.48630 5.61546 5.66686 5.77812 5.82834 5.85919 5.88144 5.88624 6.00405 6.04250 6.12316 6.26078 6.34781 6.39092 6.48020 6.60938 6.71734 7.01957 7.12072 7.17697 7.56225 7.69921 7.93404 8.04908 8.13284 8.59088 9.19855 9.75482 11.23469 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.001913 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.326622 B =14635.865353 C =15346.916753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.067 0.933 4 C 0.030 3.970 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.511 5.511 14 C 0.054 3.946 15 C 0.053 3.947 16 N -0.538 5.538 17 C 0.060 3.940 18 C -0.123 4.123 19 C 0.066 3.934 20 O -0.373 6.373 21 C 0.019 3.981 22 C 0.461 3.539 23 F -0.175 7.175 24 F -0.178 7.178 25 F -0.176 7.176 26 C 0.059 3.941 27 C 0.059 3.941 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.022 0.978 32 H 0.015 0.985 33 H 0.256 0.744 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.045 0.955 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 -2.302 -26.744 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.235 5.235 14 C -0.075 4.075 15 C -0.075 4.075 16 N -0.263 5.263 17 C -0.069 4.069 18 C -0.160 4.160 19 C -0.010 4.010 20 O -0.292 6.292 21 C -0.060 4.060 22 C 0.407 3.593 23 F -0.156 7.156 24 F -0.160 7.160 25 F -0.157 7.157 26 C -0.069 4.069 27 C -0.069 4.069 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.033 0.967 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.502 -2.188 -26.588 26.907 hybrid contribution 1.155 -0.186 -0.118 1.176 sum -2.347 -2.374 -26.706 26.914 Atomic orbital electron populations 1.22504 0.99654 1.01398 1.00584 1.21895 0.90144 0.98156 0.91909 0.91457 1.19192 0.96313 0.95506 0.89721 1.21176 0.91595 1.28900 1.10720 0.92308 1.25002 0.97947 0.95991 0.96038 1.69972 1.34973 1.33411 1.16140 0.86591 0.86606 0.77510 0.77584 1.19868 1.21423 1.21396 1.62282 1.57597 1.02224 1.01361 1.22139 0.98461 0.96639 0.90234 1.22277 0.97108 0.90065 0.98047 1.62264 1.57972 1.03672 1.02428 1.21948 0.98711 0.96507 0.89685 1.21667 1.03400 0.99349 0.91620 1.22638 1.00729 0.92228 0.85424 1.87916 1.86581 1.38449 1.16224 1.23487 1.03609 0.93855 0.85043 1.20195 0.74134 0.82296 0.82699 1.93229 1.72951 1.57409 1.92054 1.93212 1.89284 1.84912 1.48561 1.93226 1.35892 1.90625 1.95959 1.22195 0.99919 0.95777 0.88971 1.22132 0.95776 0.91606 0.97416 0.92682 0.94121 0.92745 0.95996 0.96691 0.93426 0.94874 0.90964 0.93998 0.90487 0.94637 0.90688 0.89918 0.90297 0.92455 0.92352 0.88577 0.88576 0.93693 0.91016 0.89185 0.94762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.39 37.16 0.31 -2.84 16 2 C 0.09 1.76 2.26 -67.71 -0.15 1.60 16 3 H 0.07 1.39 7.98 -51.93 -0.41 0.97 16 4 C 0.03 0.75 4.39 -27.88 -0.12 0.63 16 5 C -0.49 -13.49 8.80 -34.44 -0.30 -13.79 16 6 H 0.06 1.65 7.75 -52.49 -0.41 1.24 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 9 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 N -0.51 -9.63 4.32 -226.49 -0.98 -10.60 16 14 C 0.05 0.85 5.36 -3.77 -0.02 0.83 16 15 C 0.05 0.72 4.93 -3.77 -0.02 0.71 16 16 N -0.54 -7.08 4.86 -234.47 -1.14 -8.22 16 17 C 0.06 0.60 5.28 -3.83 -0.02 0.58 16 18 C -0.12 -1.09 4.85 -26.73 -0.13 -1.22 16 19 C 0.07 0.46 5.94 37.16 0.22 0.68 16 20 O -0.37 -3.15 10.23 -35.23 -0.36 -3.51 16 21 C 0.02 0.11 5.90 37.16 0.22 0.33 16 22 C 0.46 3.50 3.32 37.16 0.12 3.62 16 23 F -0.18 -1.64 17.26 2.25 0.04 -1.60 16 24 F -0.18 -1.29 17.32 2.25 0.04 -1.25 16 25 F -0.18 -1.61 17.26 2.25 0.04 -1.57 16 26 C 0.06 0.88 5.58 -3.76 -0.02 0.86 16 27 C 0.06 1.03 4.70 -3.77 -0.02 1.01 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.63 6.84 -51.93 -0.36 0.28 16 30 H 0.05 0.94 6.39 -51.93 -0.33 0.61 16 31 H 0.02 0.58 6.43 -51.93 -0.33 0.25 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 34 H 0.03 0.52 6.84 -51.93 -0.36 0.16 16 35 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.91 5.99 -51.93 -0.31 0.60 16 38 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.77 6.26 -51.93 -0.33 0.44 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.09 1.79 6.36 -51.93 -0.33 1.46 16 49 H 0.03 0.58 6.40 -51.93 -0.33 0.25 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -31.04 391.79 -8.89 -39.93 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -8.12 Total: -4.01 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.03 Total: -5.70 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -1.38 Total: -45.14 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: -0.36 Total: -3.51 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.12 Total: -4.43 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.04 -8.89 -39.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411180809.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.319 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds