Wall clock time and date at job start Tue Mar 31 2020 20:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47271 * 2 1 4 4 C 1.53005 * 109.46841 * 119.99557 * 2 1 3 5 5 C 1.50700 * 109.46778 * 183.42191 * 4 2 1 6 6 H 1.07997 * 120.00569 * 5.04186 * 5 4 2 7 7 C 1.37883 * 119.99709 * 184.76775 * 5 4 2 8 8 N 1.31511 * 119.99916 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99675 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47466 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46796 * 120.00373 * 9 7 5 12 12 H 1.48501 * 109.47019 * 239.99976 * 9 7 5 13 13 N 1.46892 * 109.47179 * 239.99406 * 2 1 3 14 14 C 1.46960 * 111.00022 * 72.16101 * 13 2 1 15 15 C 1.53043 * 109.36574 * 176.81046 * 14 13 2 16 16 N 1.46961 * 109.36689 * 58.40287 * 15 14 13 17 17 C 1.46904 * 111.00119 * 176.81007 * 16 15 14 18 18 C 1.52991 * 109.47019 * 313.79850 * 17 16 15 19 19 C 1.53005 * 109.47216 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.47211 * 179.97438 * 19 18 17 21 21 C 1.42905 * 113.99459 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.46702 * 180.02562 * 21 20 19 23 23 F 1.39897 * 109.47579 * 59.99961 * 22 21 20 24 24 F 1.39902 * 109.47287 * 180.02562 * 22 21 20 25 25 F 1.39904 * 109.47167 * 300.00070 * 22 21 20 26 26 C 1.46959 * 110.87709 * 300.67641 * 16 15 14 27 27 C 1.46951 * 111.00339 * 308.36209 * 13 2 1 28 28 H 1.09002 * 109.47194 * 300.00606 * 1 2 3 29 29 H 1.08996 * 109.46993 * 60.00071 * 1 2 3 30 30 H 1.08998 * 109.47014 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47363 * 63.42609 * 4 2 1 32 32 H 1.09000 * 109.47043 * 303.42267 * 4 2 1 33 33 H 0.97005 * 119.99833 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.48765 * 296.78178 * 14 13 2 35 35 H 1.09007 * 109.48777 * 56.84280 * 14 13 2 36 36 H 1.08998 * 109.49147 * 298.43330 * 15 14 13 37 37 H 1.09002 * 109.49091 * 178.36991 * 15 14 13 38 38 H 1.09006 * 109.46654 * 73.79875 * 17 16 15 39 39 H 1.08994 * 109.46604 * 193.79592 * 17 16 15 40 40 H 1.09004 * 109.47636 * 300.00052 * 18 17 16 41 41 H 1.09004 * 109.47635 * 60.00275 * 18 17 16 42 42 H 1.09004 * 109.47010 * 300.00619 * 19 18 17 43 43 H 1.09004 * 109.46445 * 59.99728 * 19 18 17 44 44 H 1.08998 * 109.46779 * 300.00028 * 21 20 19 45 45 H 1.08995 * 109.47126 * 60.00062 * 21 20 19 46 46 H 1.09000 * 109.49167 * 299.35709 * 26 16 15 47 47 H 1.08997 * 109.48850 * 179.28622 * 26 16 15 48 48 H 1.09001 * 109.48718 * 303.15237 * 27 13 2 49 49 H 1.08999 * 109.49193 * 63.19736 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5446 -0.6482 1.2925 6 1 4.0786 -0.0700 0.5529 7 6 4.2391 -1.3149 2.2795 8 7 3.5885 -2.0149 3.1830 9 14 6.1041 -1.2237 2.3334 10 1 6.5910 -0.3780 1.2141 11 1 6.5335 -0.6299 3.6250 12 1 6.6704 -2.5905 2.2044 13 7 2.0197 -0.6926 -1.1993 14 6 1.7990 0.1200 -2.4037 15 6 2.3927 -0.5994 -3.6171 16 7 1.7655 -1.9212 -3.7550 17 6 2.2552 -2.6138 -4.9544 18 6 2.2397 -1.6495 -6.1421 19 6 2.7503 -2.3706 -7.3912 20 8 2.7352 -1.4701 -8.5007 21 6 3.1956 -2.0476 -9.7241 22 6 3.1369 -0.9990 -10.8367 23 9 3.9517 0.0866 -10.4979 24 9 3.5870 -1.5644 -12.0346 25 9 1.8179 -0.5605 -10.9952 26 6 1.9863 -2.7339 -2.5506 27 6 1.3925 -2.0144 -1.3372 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7276 -1.7650 1.2193 32 1 1.6274 -0.2439 2.1382 33 1 4.0771 -2.4836 3.8776 34 1 0.7290 0.2643 -2.5541 35 1 2.2834 1.0890 -2.2825 36 1 3.4672 -0.7193 -3.4789 37 1 2.2047 -0.0121 -4.5160 38 1 3.2737 -2.9621 -4.7824 39 1 1.6112 -3.4663 -5.1700 40 1 1.2212 -1.3011 -6.3141 41 1 2.8837 -0.7970 -5.9265 42 1 3.7688 -2.7187 -7.2190 43 1 2.1066 -3.2234 -7.6070 44 1 4.2234 -2.3888 -9.6007 45 1 2.5611 -2.8937 -9.9879 46 1 3.0562 -2.8780 -2.4002 47 1 1.5019 -3.7027 -2.6718 48 1 1.5806 -2.6016 -0.4383 49 1 0.3179 -1.8945 -1.4750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411180809.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:45 Heat of formation + Delta-G solvation = -212.783781 kcal Electronic energy + Delta-G solvation = -29820.921274 eV Core-core repulsion = 25174.186756 eV Total energy + Delta-G solvation = -4646.734518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.11673 -48.67026 -48.60933 -40.60666 -39.30772 -37.81049 -35.05525 -33.84990 -32.19985 -31.58098 -30.29414 -29.17655 -27.44397 -25.25626 -25.07711 -24.31083 -24.09029 -22.35296 -21.16617 -20.01552 -19.64739 -19.64402 -18.69247 -18.34504 -17.69104 -17.25550 -16.98764 -16.52892 -16.20653 -15.94807 -15.73886 -15.51567 -15.48730 -15.42645 -15.13870 -15.05459 -14.79120 -14.77146 -14.65794 -14.54405 -14.49796 -13.83894 -13.67726 -13.29713 -13.19090 -13.11485 -12.83387 -12.73156 -12.61463 -12.46207 -12.36758 -12.29237 -12.02369 -11.96004 -11.89598 -11.54562 -11.42883 -11.07478 -10.92233 -10.81065 -10.47546 -9.30179 -8.86445 -8.09050 -6.13142 1.40255 1.41348 1.47645 1.54211 2.26748 2.47363 2.82103 2.98383 2.99966 3.13543 3.28814 3.45498 3.95421 4.00466 4.06159 4.10457 4.13275 4.14537 4.22124 4.32022 4.41472 4.43007 4.46091 4.51035 4.56292 4.59540 4.61098 4.69118 4.74405 4.90155 4.96946 5.01850 5.09550 5.10474 5.19286 5.19512 5.24694 5.33796 5.50896 5.70429 5.86159 5.90632 6.05061 6.13290 6.34983 6.48246 6.56142 7.00057 7.51931 9.03037 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.001913 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.326622 B =14635.865353 C =15346.916753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.094 3.906 3 H 0.062 0.938 4 C 0.036 3.964 5 C -0.493 4.493 6 H 0.054 0.946 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.955 3.045 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.532 5.532 14 C 0.055 3.945 15 C 0.059 3.941 16 N -0.540 5.540 17 C 0.061 3.939 18 C -0.117 4.117 19 C 0.068 3.932 20 O -0.399 6.399 21 C 0.020 3.980 22 C 0.457 3.543 23 F -0.189 7.189 24 F -0.177 7.177 25 F -0.188 7.188 26 C 0.068 3.932 27 C 0.063 3.937 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.051 0.949 31 H -0.001 1.001 32 H -0.011 1.011 33 H 0.258 0.742 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.027 0.973 37 H 0.100 0.900 38 H 0.036 0.964 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.122 0.878 46 H 0.025 0.975 47 H 0.093 0.907 48 H 0.055 0.945 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 -2.756 -28.954 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.014 4.014 3 H 0.081 0.919 4 C -0.001 4.001 5 C -0.532 4.532 6 H 0.072 0.928 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.782 3.218 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.257 5.257 14 C -0.073 4.073 15 C -0.069 4.069 16 N -0.265 5.265 17 C -0.066 4.066 18 C -0.155 4.155 19 C -0.008 4.008 20 O -0.319 6.319 21 C -0.058 4.058 22 C 0.403 3.597 23 F -0.171 7.171 24 F -0.159 7.159 25 F -0.170 7.170 26 C -0.061 4.061 27 C -0.065 4.065 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.017 0.983 32 H 0.008 0.992 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.118 0.882 38 H 0.054 0.946 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.136 0.864 45 H 0.140 0.860 46 H 0.043 0.957 47 H 0.111 0.889 48 H 0.074 0.926 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.190 -2.637 -28.823 29.119 hybrid contribution 1.035 -0.035 0.530 1.163 sum -2.155 -2.672 -28.293 28.500 Atomic orbital electron populations 1.22351 0.97203 1.01618 1.01781 1.21602 0.92066 0.97041 0.90694 0.91926 1.19043 0.95183 0.94485 0.91367 1.21453 0.93022 1.28392 1.10324 0.92783 1.25831 1.02763 0.95776 0.95783 1.70097 1.36821 1.34354 1.16863 0.85539 0.80880 0.77645 0.77777 1.19137 1.20868 1.20909 1.62171 1.58395 1.03096 1.02013 1.22197 0.99090 0.96501 0.89512 1.22232 0.95981 0.90697 0.97944 1.62271 1.58098 1.03426 1.02697 1.22016 0.99017 0.97010 0.88575 1.21553 1.02874 0.98860 0.92173 1.22627 1.01802 0.92089 0.84266 1.87857 1.87047 1.39691 1.17284 1.23672 1.05533 0.93309 0.83286 1.20580 0.73335 0.82387 0.83437 1.93198 1.73316 1.58391 1.92185 1.93210 1.89205 1.84750 1.48694 1.93198 1.36808 1.90874 1.96084 1.22065 0.98607 0.96588 0.88809 1.22027 0.96350 0.90827 0.97285 0.92499 0.91826 0.92988 0.98265 0.99233 0.93327 0.94142 0.90840 0.95504 0.88185 0.94565 0.88978 0.90552 0.91409 0.91285 0.90376 0.86371 0.85999 0.95661 0.88921 0.92648 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.80 8.39 71.98 0.60 -5.20 16 2 C 0.09 3.86 2.26 44.92 0.10 3.96 16 3 H 0.06 2.60 7.98 -2.39 -0.02 2.58 16 4 C 0.04 1.90 4.39 29.85 0.13 2.03 16 5 C -0.49 -28.07 8.80 25.60 0.23 -27.85 16 6 H 0.05 3.07 7.75 -2.91 -0.02 3.04 16 7 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 8 N -0.94 -57.54 13.29 21.45 0.28 -57.25 16 9 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 N -0.53 -20.08 4.32 -870.49 -3.76 -23.84 16 14 C 0.06 1.66 5.36 86.31 0.46 2.13 16 15 C 0.06 1.53 4.93 86.31 0.43 1.96 16 16 N -0.54 -13.15 4.86 -895.72 -4.35 -17.50 16 17 C 0.06 1.07 5.28 86.30 0.46 1.52 16 18 C -0.12 -1.78 4.85 30.59 0.15 -1.63 16 19 C 0.07 0.74 5.94 71.98 0.43 1.17 16 20 O -0.40 -5.78 10.23 -148.98 -1.52 -7.30 16 21 C 0.02 0.17 5.90 71.98 0.42 0.60 16 22 C 0.46 6.27 3.32 71.98 0.24 6.51 16 23 F -0.19 -3.40 17.26 44.97 0.78 -2.62 16 24 F -0.18 -2.31 17.32 44.97 0.78 -1.53 16 25 F -0.19 -3.27 17.26 44.97 0.78 -2.49 16 26 C 0.07 1.94 5.58 86.31 0.48 2.42 16 27 C 0.06 2.22 4.70 86.31 0.41 2.63 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.87 6.84 -2.39 -0.02 1.85 16 30 H 0.05 1.78 6.39 -2.39 -0.02 1.76 16 31 H 0.00 -0.05 6.43 -2.39 -0.02 -0.07 16 32 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 34 H 0.04 1.17 6.84 -2.38 -0.02 1.15 16 35 H 0.07 2.18 8.05 -2.38 -0.02 2.16 16 36 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 2.14 5.99 -2.39 -0.01 2.13 16 38 H 0.04 0.65 8.08 -2.38 -0.02 0.63 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.07 1.18 6.26 -2.39 -0.01 1.16 16 42 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.06 2.31 6.36 -2.39 -0.02 2.29 16 49 H 0.04 1.40 6.40 -2.39 -0.02 1.38 16 Total: -1.00 -68.27 391.79 0.94 -67.33 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.93 Total: 7.22 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 4.99 Total: -9.61 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -7.82 Total: -98.59 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -1.52 Total: -7.30 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 2.33 Total: -6.65 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -68.27 0.94 -67.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411180809.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.454 kcal (2) G-P(sol) polarization free energy of solvation -68.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds