Wall clock time and date at job start Tue Mar 31 2020 21:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47233 * 2 1 4 4 C 1.50702 * 109.46926 * 240.00708 * 2 1 3 5 5 H 1.08005 * 119.99394 * 274.99809 * 4 2 1 6 6 C 1.37876 * 120.00429 * 95.00600 * 4 2 1 7 7 N 1.31515 * 119.99941 * 184.91294 * 6 4 2 8 8 Si 1.86801 * 119.99863 * 4.91115 * 6 4 2 9 9 H 1.48496 * 109.47035 * 84.83833 * 8 6 4 10 10 H 1.48498 * 109.46694 * 204.83601 * 8 6 4 11 11 H 1.48501 * 109.46852 * 324.83681 * 8 6 4 12 12 N 1.46492 * 109.47316 * 120.00133 * 2 1 3 13 13 C 1.46499 * 119.99891 * 59.99905 * 12 2 1 14 14 C 1.34777 * 120.00367 * 239.99763 * 12 2 1 15 15 O 1.21281 * 119.99959 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00240 * 179.97438 * 14 12 2 17 17 H 1.08994 * 115.55792 * 34.42015 * 16 14 12 18 18 C 1.53153 * 117.51526 * 248.67008 * 16 14 12 19 19 C 1.52324 * 117.55428 * 180.23470 * 16 14 12 20 20 C 1.53295 * 128.82010 * 349.52528 * 19 16 14 21 21 N 1.47718 * 85.85457 * 196.98720 * 20 19 16 22 22 C 1.34779 * 134.39303 * 204.08825 * 21 20 19 23 23 O 1.21506 * 120.00216 * 180.02562 * 22 21 20 24 24 O 1.34637 * 119.99947 * 0.02562 * 22 21 20 25 25 C 1.45199 * 117.00212 * 179.97438 * 24 22 21 26 26 C 1.53006 * 109.46818 * 60.00123 * 25 24 22 27 27 C 1.52997 * 109.47315 * 179.97438 * 25 24 22 28 28 C 1.52997 * 109.46959 * 300.00116 * 25 24 22 29 29 C 1.47720 * 91.21501 * 24.09700 * 21 20 19 30 30 H 1.09001 * 109.46750 * 54.97197 * 1 2 3 31 31 H 1.08993 * 109.46831 * 174.97357 * 1 2 3 32 32 H 1.08996 * 109.47042 * 294.97590 * 1 2 3 33 33 H 0.96993 * 119.99880 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47336 * 270.00271 * 13 12 2 35 35 H 1.09001 * 109.47192 * 29.99964 * 13 12 2 36 36 H 1.09005 * 109.47430 * 150.00257 * 13 12 2 37 37 H 1.08996 * 117.52136 * 359.95100 * 18 16 14 38 38 H 1.09006 * 117.51326 * 145.03530 * 18 16 14 39 39 H 1.08998 * 113.80745 * 311.22644 * 20 19 16 40 40 H 1.08994 * 113.80799 * 82.75289 * 20 19 16 41 41 H 1.08998 * 109.47738 * 59.99809 * 26 25 24 42 42 H 1.09004 * 109.47087 * 180.02562 * 26 25 24 43 43 H 1.09000 * 109.46941 * 299.99567 * 26 25 24 44 44 H 1.08998 * 109.46849 * 60.00075 * 27 25 24 45 45 H 1.08992 * 109.47163 * 180.02562 * 27 25 24 46 46 H 1.08998 * 109.47562 * 300.00635 * 27 25 24 47 47 H 1.08997 * 109.47137 * 59.99897 * 28 25 24 48 48 H 1.09004 * 109.46607 * 179.97438 * 28 25 24 49 49 H 1.09003 * 109.46807 * 299.99276 * 28 25 24 50 50 H 1.09008 * 113.80941 * 221.67005 * 29 21 20 51 51 H 1.08998 * 113.81559 * 90.13963 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1355 -1.7854 -1.2292 6 6 2.3604 0.0123 -2.3581 7 7 2.7061 -0.6129 -3.4623 8 14 2.3137 1.8793 -2.3173 9 1 3.5993 2.3949 -1.7820 10 1 2.1060 2.3993 -3.6926 11 1 1.1988 2.3276 -1.4448 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0860 1.1256 1.8916 16 6 3.2952 -0.7460 3.3140 17 1 3.5231 -1.8041 3.1861 18 6 2.7308 -0.3021 4.6667 19 6 4.1623 0.0488 4.2819 20 6 4.7946 1.4322 4.0918 21 7 5.6649 1.0725 5.2299 22 6 6.3595 1.7769 6.1452 23 8 7.0096 1.1974 6.9925 24 8 6.3328 3.1228 6.1209 25 6 7.1039 3.8160 7.1373 26 6 8.5793 3.4315 7.0087 27 6 6.9530 5.3269 6.9501 28 6 6.5926 3.4197 8.5238 29 6 5.4703 -0.3675 4.9642 30 1 -0.3633 0.5899 -0.8416 31 1 -0.3633 -1.0237 -0.0900 32 1 -0.3633 0.4339 0.9315 33 1 2.9365 -0.1046 -4.2556 34 1 0.7376 -2.1444 1.9992 35 1 1.5295 -2.5968 0.4707 36 1 2.4629 -2.5819 1.9862 37 1 1.9973 0.5041 4.6663 38 1 2.5869 -1.0685 5.4283 39 1 5.3284 1.5461 3.1483 40 1 4.1157 2.2588 4.3011 41 1 8.9436 3.7137 6.0209 42 1 9.1582 3.9515 7.7721 43 1 8.6872 2.3551 7.1419 44 1 5.9020 5.6011 7.0414 45 1 7.5321 5.8472 7.7129 46 1 7.3174 5.6089 5.9623 47 1 6.7006 2.3433 8.6569 48 1 7.1718 3.9398 9.2869 49 1 5.5416 3.6937 8.6154 50 1 5.3263 -0.9656 5.8641 51 1 6.2066 -0.7927 4.2821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492795922.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:38 Heat of formation + Delta-G solvation = -42.246570 kcal Electronic energy + Delta-G solvation = -30326.090448 eV Core-core repulsion = 26228.607719 eV Total energy + Delta-G solvation = -4097.482729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.03004 -40.11054 -38.66064 -36.77119 -35.50853 -34.61364 -33.99567 -32.65260 -30.41506 -28.06436 -27.61937 -27.58554 -26.40971 -26.23108 -25.32365 -24.15982 -22.18145 -20.83913 -19.66591 -18.89764 -18.14766 -17.76712 -17.36909 -16.79744 -16.52553 -16.37390 -15.63298 -15.21809 -14.94810 -14.79479 -14.32316 -14.23147 -14.09475 -13.81109 -13.38389 -13.22449 -12.70197 -12.63161 -12.55424 -12.43508 -12.40484 -12.34111 -12.11009 -12.09674 -12.03878 -11.84072 -11.65220 -11.48718 -11.38858 -11.09845 -10.93718 -10.78183 -10.69032 -10.52097 -10.45047 -10.31353 -9.92292 -9.80671 -9.33776 -9.07832 -8.84342 -8.64323 -7.72015 -6.20689 -4.23222 1.86877 2.75645 2.97267 3.28548 3.35973 3.42551 3.58162 3.60564 3.85417 4.22437 4.35118 4.44035 4.50891 4.55320 4.68935 4.76863 5.08653 5.10767 5.14613 5.24042 5.24346 5.26122 5.31070 5.41391 5.46432 5.47410 5.53673 5.56482 5.63762 5.66429 5.75479 5.77072 5.79893 5.89412 5.92737 5.96636 6.07096 6.11530 6.24916 6.32539 6.36544 6.39602 6.54794 6.88805 7.03835 7.42563 7.59265 7.59908 8.09398 8.25559 8.45380 8.80030 8.88204 9.41756 10.91130 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.002621 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.764983 B =10681.480195 C =11589.824465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.223 3.777 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.875 3.125 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.582 5.582 13 C 0.083 3.917 14 C 0.532 3.468 15 O -0.554 6.554 16 C -0.156 4.156 17 H 0.129 0.871 18 C -0.112 4.112 19 C -0.155 4.155 20 C 0.165 3.835 21 N -0.633 5.633 22 C 0.677 3.323 23 O -0.575 6.575 24 O -0.360 6.360 25 C 0.135 3.865 26 C -0.183 4.183 27 C -0.141 4.141 28 C -0.182 4.182 29 C 0.175 3.825 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.026 0.974 33 H 0.267 0.733 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.087 0.913 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 3.428 21.326 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.122 3.878 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.702 3.298 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.312 5.312 13 C -0.061 4.061 14 C 0.319 3.681 15 O -0.434 6.434 16 C -0.178 4.178 17 H 0.147 0.853 18 C -0.150 4.150 19 C -0.157 4.157 20 C 0.043 3.957 21 N -0.376 5.376 22 C 0.433 3.567 23 O -0.466 6.466 24 O -0.274 6.274 25 C 0.098 3.902 26 C -0.240 4.240 27 C -0.198 4.198 28 C -0.239 4.239 29 C 0.054 3.946 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.106 0.894 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.953 4.080 21.435 22.375 hybrid contribution 0.096 0.761 -0.239 0.803 sum 5.049 4.840 21.196 22.320 Atomic orbital electron populations 1.22208 0.98289 1.00897 0.99082 1.19323 0.90796 0.94934 0.82721 0.91754 1.21110 1.44793 0.95666 0.94821 0.90366 1.24960 0.93727 0.98527 0.95216 1.69884 1.45084 1.36121 1.01707 0.86888 0.79892 0.86044 0.76975 1.19602 1.21420 1.18838 1.48252 1.48599 1.11764 1.22633 1.21662 0.98991 0.83004 1.02460 1.19417 0.79040 0.86480 0.83179 1.90629 1.58790 1.17117 1.76828 1.22339 1.04115 1.00420 0.90883 0.85297 1.22799 0.93697 1.02951 0.95534 1.22448 0.92476 0.97825 1.02931 1.22606 0.89327 0.95531 0.88213 1.48608 1.49824 1.08707 1.30413 1.17389 0.77830 0.80692 0.80745 1.90872 1.45671 1.70912 1.39096 1.86345 1.68261 1.18104 1.54714 1.22066 0.90540 0.91467 0.86138 1.22515 0.94212 1.04924 1.02373 1.21855 1.03274 0.91490 1.03177 1.22511 1.01370 1.04899 0.95170 1.22601 0.92685 0.80589 0.98686 0.92648 0.93152 0.95533 0.92347 0.93744 0.90057 0.92350 0.87725 0.87375 0.88207 0.89468 0.92144 0.91220 0.89435 0.91436 0.90201 0.91397 0.89421 0.91247 0.92193 0.89424 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.10 37.16 0.34 -2.62 16 2 C 0.22 5.13 2.30 -69.08 -0.16 4.97 16 3 H 0.06 1.63 4.05 -51.93 -0.21 1.42 16 4 C -0.53 -13.95 8.72 -34.44 -0.30 -14.25 16 5 H 0.08 2.19 6.82 -52.48 -0.36 1.83 16 6 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 7 N -0.89 -26.27 13.96 55.43 0.77 -25.49 16 8 Si 0.88 21.73 26.99 -169.99 -4.59 17.14 16 9 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.26 -6.31 6.82 56.52 0.39 -5.92 16 12 N -0.58 -11.27 2.75 -175.26 -0.48 -11.76 16 13 C 0.08 1.24 9.42 59.85 0.56 1.80 16 14 C 0.53 9.81 7.46 -10.98 -0.08 9.73 16 15 O -0.55 -12.07 14.47 5.56 0.08 -11.99 16 16 C -0.16 -2.01 5.29 -92.04 -0.49 -2.50 16 17 H 0.13 1.38 6.44 -51.93 -0.33 1.05 16 18 C -0.11 -1.20 10.24 -27.00 -0.28 -1.47 16 19 C -0.16 -1.88 3.04 -155.02 -0.47 -2.35 16 20 C 0.16 2.29 7.31 -3.22 -0.02 2.26 16 21 N -0.63 -8.59 3.61 -187.60 -0.68 -9.27 16 22 C 0.68 9.97 8.22 54.06 0.44 10.42 16 23 O -0.58 -9.14 12.61 -19.28 -0.24 -9.38 16 24 O -0.36 -4.97 9.87 -40.32 -0.40 -5.36 16 25 C 0.13 1.46 1.13 -90.62 -0.10 1.36 16 26 C -0.18 -1.89 8.37 37.16 0.31 -1.58 16 27 C -0.14 -1.17 8.85 37.16 0.33 -0.84 16 28 C -0.18 -1.84 8.37 37.16 0.31 -1.53 16 29 C 0.18 1.93 8.85 -3.23 -0.03 1.91 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.95 7.84 -51.93 -0.41 0.54 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.36 6.56 -51.93 -0.34 1.02 16 36 H 0.06 0.71 6.00 -51.93 -0.31 0.39 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.51 8.01 -51.93 -0.42 1.09 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.10 5.88 -51.93 -0.31 0.79 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 51 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 405.34 15.07 6.11 6.11 Total: -1.00 -33.10 405.34 -7.64 -40.74 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.48 Total: 1.84 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 0.27 Total: 7.44 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.39 Total: -46.52 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.56 Total: -26.74 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.59 Total: 17.14 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.10 -7.64 -40.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492795922.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.510 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds