Wall clock time and date at job start Tue Mar 31 2020 21:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47233 * 2 1 4 4 C 1.50702 * 109.46926 * 240.00708 * 2 1 3 5 5 H 1.08005 * 119.99394 * 274.99809 * 4 2 1 6 6 C 1.37876 * 120.00429 * 95.00600 * 4 2 1 7 7 N 1.31515 * 119.99941 * 184.91294 * 6 4 2 8 8 Si 1.86801 * 119.99863 * 4.91115 * 6 4 2 9 9 H 1.48496 * 109.47035 * 84.83833 * 8 6 4 10 10 H 1.48498 * 109.46694 * 204.83601 * 8 6 4 11 11 H 1.48501 * 109.46852 * 324.83681 * 8 6 4 12 12 N 1.46492 * 109.47316 * 120.00133 * 2 1 3 13 13 C 1.46499 * 119.99891 * 59.99905 * 12 2 1 14 14 C 1.34777 * 120.00367 * 239.99763 * 12 2 1 15 15 O 1.21281 * 119.99959 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00240 * 179.97438 * 14 12 2 17 17 H 1.08994 * 115.55792 * 34.42015 * 16 14 12 18 18 C 1.53153 * 117.51526 * 248.67008 * 16 14 12 19 19 C 1.52324 * 117.55428 * 180.23470 * 16 14 12 20 20 C 1.53295 * 128.82010 * 349.52528 * 19 16 14 21 21 N 1.47718 * 85.85457 * 196.98720 * 20 19 16 22 22 C 1.34779 * 134.39303 * 204.08825 * 21 20 19 23 23 O 1.21506 * 120.00216 * 180.02562 * 22 21 20 24 24 O 1.34637 * 119.99947 * 0.02562 * 22 21 20 25 25 C 1.45199 * 117.00212 * 179.97438 * 24 22 21 26 26 C 1.53006 * 109.46818 * 60.00123 * 25 24 22 27 27 C 1.52997 * 109.47315 * 179.97438 * 25 24 22 28 28 C 1.52997 * 109.46959 * 300.00116 * 25 24 22 29 29 C 1.47720 * 91.21501 * 24.09700 * 21 20 19 30 30 H 1.09001 * 109.46750 * 54.97197 * 1 2 3 31 31 H 1.08993 * 109.46831 * 174.97357 * 1 2 3 32 32 H 1.08996 * 109.47042 * 294.97590 * 1 2 3 33 33 H 0.96993 * 119.99880 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47336 * 270.00271 * 13 12 2 35 35 H 1.09001 * 109.47192 * 29.99964 * 13 12 2 36 36 H 1.09005 * 109.47430 * 150.00257 * 13 12 2 37 37 H 1.08996 * 117.52136 * 359.95100 * 18 16 14 38 38 H 1.09006 * 117.51326 * 145.03530 * 18 16 14 39 39 H 1.08998 * 113.80745 * 311.22644 * 20 19 16 40 40 H 1.08994 * 113.80799 * 82.75289 * 20 19 16 41 41 H 1.08998 * 109.47738 * 59.99809 * 26 25 24 42 42 H 1.09004 * 109.47087 * 180.02562 * 26 25 24 43 43 H 1.09000 * 109.46941 * 299.99567 * 26 25 24 44 44 H 1.08998 * 109.46849 * 60.00075 * 27 25 24 45 45 H 1.08992 * 109.47163 * 180.02562 * 27 25 24 46 46 H 1.08998 * 109.47562 * 300.00635 * 27 25 24 47 47 H 1.08997 * 109.47137 * 59.99897 * 28 25 24 48 48 H 1.09004 * 109.46607 * 179.97438 * 28 25 24 49 49 H 1.09003 * 109.46807 * 299.99276 * 28 25 24 50 50 H 1.09008 * 113.80941 * 221.67005 * 29 21 20 51 51 H 1.08998 * 113.81559 * 90.13963 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1355 -1.7854 -1.2292 6 6 2.3604 0.0123 -2.3581 7 7 2.7061 -0.6129 -3.4623 8 14 2.3137 1.8793 -2.3173 9 1 3.5993 2.3949 -1.7820 10 1 2.1060 2.3993 -3.6926 11 1 1.1988 2.3276 -1.4448 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0860 1.1256 1.8916 16 6 3.2952 -0.7460 3.3140 17 1 3.5231 -1.8041 3.1861 18 6 2.7308 -0.3021 4.6667 19 6 4.1623 0.0488 4.2819 20 6 4.7946 1.4322 4.0918 21 7 5.6649 1.0725 5.2299 22 6 6.3595 1.7769 6.1452 23 8 7.0096 1.1974 6.9925 24 8 6.3328 3.1228 6.1209 25 6 7.1039 3.8160 7.1373 26 6 8.5793 3.4315 7.0087 27 6 6.9530 5.3269 6.9501 28 6 6.5926 3.4197 8.5238 29 6 5.4703 -0.3675 4.9642 30 1 -0.3633 0.5899 -0.8416 31 1 -0.3633 -1.0237 -0.0900 32 1 -0.3633 0.4339 0.9315 33 1 2.9365 -0.1046 -4.2556 34 1 0.7376 -2.1444 1.9992 35 1 1.5295 -2.5968 0.4707 36 1 2.4629 -2.5819 1.9862 37 1 1.9973 0.5041 4.6663 38 1 2.5869 -1.0685 5.4283 39 1 5.3284 1.5461 3.1483 40 1 4.1157 2.2588 4.3011 41 1 8.9436 3.7137 6.0209 42 1 9.1582 3.9515 7.7721 43 1 8.6872 2.3551 7.1419 44 1 5.9020 5.6011 7.0414 45 1 7.5321 5.8472 7.7129 46 1 7.3174 5.6089 5.9623 47 1 6.7006 2.3433 8.6569 48 1 7.1718 3.9398 9.2869 49 1 5.5416 3.6937 8.6154 50 1 5.3263 -0.9656 5.8641 51 1 6.2066 -0.7927 4.2821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492795922.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:37 Heat of formation + Delta-G solvation = -63.017921 kcal Electronic energy + Delta-G solvation = -30326.991161 eV Core-core repulsion = 26228.607719 eV Total energy + Delta-G solvation = -4098.383442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.06701 -41.24128 -39.93888 -37.82923 -37.06978 -35.71059 -34.92891 -34.59013 -32.14219 -29.07738 -28.38504 -28.33482 -27.56458 -27.39249 -27.25706 -25.41984 -23.13238 -22.27507 -20.74103 -20.05510 -19.38043 -19.19879 -18.79882 -18.05168 -17.71259 -17.51458 -17.06475 -16.35589 -16.20941 -15.96677 -15.64835 -15.39570 -15.14171 -14.87150 -14.71814 -14.46068 -14.20035 -14.15974 -13.79820 -13.67626 -13.37421 -13.26489 -13.15566 -13.07566 -13.05461 -12.91137 -12.89813 -12.81706 -12.63416 -12.53533 -12.38943 -12.26164 -11.90959 -11.81386 -11.63099 -11.42561 -11.28705 -11.24926 -10.91728 -10.77525 -10.54229 -9.89267 -9.27279 -8.36303 -6.39447 0.91541 1.27399 1.33884 1.41316 1.62440 1.73694 2.26163 2.28858 2.60250 2.85104 3.02682 3.20718 3.44910 3.72416 3.75771 3.78113 3.91950 3.97293 4.17249 4.23342 4.40829 4.43096 4.52912 4.55049 4.58035 4.59253 4.60697 4.69658 4.73323 4.73670 4.77513 4.79257 4.83585 4.84309 4.85977 4.90147 4.92963 5.02857 5.08507 5.13428 5.19143 5.25372 5.29951 5.37994 5.45082 5.56206 5.86583 6.18243 6.53803 6.66903 6.83355 7.18807 7.26011 7.44906 8.79005 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.002621 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.764983 B =10681.480195 C =11589.824465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.222 3.778 3 H 0.039 0.961 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.029 3.971 7 N -0.935 5.935 8 Si 0.924 3.076 9 H -0.285 1.285 10 H -0.280 1.280 11 H -0.251 1.251 12 N -0.594 5.594 13 C 0.080 3.920 14 C 0.522 3.478 15 O -0.597 6.597 16 C -0.157 4.157 17 H 0.160 0.840 18 C -0.086 4.086 19 C -0.157 4.157 20 C 0.160 3.840 21 N -0.637 5.637 22 C 0.670 3.330 23 O -0.590 6.590 24 O -0.374 6.374 25 C 0.120 3.880 26 C -0.178 4.178 27 C -0.137 4.137 28 C -0.176 4.176 29 C 0.180 3.820 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.267 0.733 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.149 0.851 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.094 0.906 49 H 0.060 0.940 50 H 0.109 0.891 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.833 3.184 24.293 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.119 3.881 3 H 0.057 0.943 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.171 4.171 7 N -0.575 5.575 8 Si 0.750 3.250 9 H -0.211 1.211 10 H -0.206 1.206 11 H -0.175 1.175 12 N -0.323 5.323 13 C -0.063 4.063 14 C 0.311 3.689 15 O -0.479 6.479 16 C -0.178 4.178 17 H 0.177 0.823 18 C -0.123 4.123 19 C -0.158 4.158 20 C 0.038 3.962 21 N -0.379 5.379 22 C 0.427 3.573 23 O -0.482 6.482 24 O -0.289 6.289 25 C 0.084 3.916 26 C -0.235 4.235 27 C -0.193 4.193 28 C -0.233 4.233 29 C 0.060 3.940 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.167 0.833 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.126 0.874 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.113 0.887 49 H 0.079 0.921 50 H 0.128 0.872 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.348 3.809 24.425 25.100 hybrid contribution 0.308 0.826 -1.099 1.409 sum 4.656 4.635 23.326 24.234 Atomic orbital electron populations 1.22058 0.95966 1.01766 0.99868 1.19074 0.92491 0.93495 0.83003 0.94258 1.21387 1.43203 0.94828 0.96080 0.92627 1.25607 0.94267 1.01979 0.95234 1.69986 1.47589 1.37454 1.02468 0.86096 0.79473 0.82097 0.77305 1.21093 1.20580 1.17469 1.48187 1.48988 1.13453 1.21686 1.21884 1.01752 0.80431 1.02185 1.20322 0.77943 0.86249 0.84377 1.90612 1.59998 1.19283 1.78041 1.22253 1.05251 1.01173 0.89127 0.82261 1.22990 0.91878 1.03132 0.94283 1.22453 0.93939 0.96283 1.03148 1.22473 0.89434 0.96755 0.87537 1.48781 1.49394 1.09878 1.29843 1.17582 0.77830 0.81031 0.80842 1.90861 1.46318 1.71295 1.39749 1.86355 1.68835 1.17821 1.55902 1.22489 0.90476 0.92653 0.85986 1.22466 0.94444 1.03549 1.03070 1.21890 1.03811 0.89691 1.03953 1.22448 1.01885 1.03553 0.95423 1.22765 0.92069 0.79547 0.99608 0.93553 0.91938 0.93337 0.92352 0.90790 0.92343 0.88956 0.88530 0.83328 0.90304 0.90550 0.92537 0.88597 0.91872 0.91456 0.87422 0.91807 0.91797 0.88696 0.92136 0.87246 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 9.10 71.98 0.66 -4.73 16 2 C 0.22 10.14 2.30 44.25 0.10 10.24 16 3 H 0.04 2.01 4.05 -2.39 -0.01 2.00 16 4 C -0.52 -27.83 8.72 25.60 0.22 -27.61 16 5 H 0.06 3.19 6.82 -2.91 -0.02 3.17 16 6 C 0.03 1.62 5.47 84.65 0.46 2.09 16 7 N -0.94 -56.66 13.96 21.45 0.30 -56.36 16 8 Si 0.92 45.80 26.99 68.60 1.85 47.65 16 9 H -0.28 -14.61 7.11 99.48 0.71 -13.90 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.25 -11.75 6.82 99.48 0.68 -11.07 16 12 N -0.59 -22.15 2.75 -826.80 -2.28 -24.42 16 13 C 0.08 2.18 9.42 127.77 1.20 3.38 16 14 C 0.52 18.59 7.46 87.66 0.65 19.24 16 15 O -0.60 -26.22 14.47 -3.03 -0.04 -26.27 16 16 C -0.16 -3.56 5.29 -11.71 -0.06 -3.63 16 17 H 0.16 2.65 6.44 -2.39 -0.02 2.64 16 18 C -0.09 -1.49 10.24 30.42 0.31 -1.18 16 19 C -0.16 -3.45 3.04 -52.39 -0.16 -3.61 16 20 C 0.16 4.46 7.31 86.24 0.63 5.09 16 21 N -0.64 -16.87 3.61 -977.86 -3.53 -20.40 16 22 C 0.67 19.65 8.22 129.79 1.07 20.72 16 23 O -0.59 -18.63 12.61 19.82 0.25 -18.38 16 24 O -0.37 -10.37 9.87 -55.46 -0.55 -10.92 16 25 C 0.12 2.49 1.13 -10.79 -0.01 2.48 16 26 C -0.18 -3.54 8.37 71.98 0.60 -2.94 16 27 C -0.14 -2.04 8.85 71.98 0.64 -1.40 16 28 C -0.18 -3.32 8.37 71.98 0.60 -2.72 16 29 C 0.18 3.55 8.85 86.24 0.76 4.32 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 2.25 7.84 -2.39 -0.02 2.23 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.88 6.56 -2.39 -0.02 1.86 16 36 H 0.09 1.87 6.00 -2.38 -0.01 1.86 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.15 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.08 2.50 8.01 -2.39 -0.02 2.48 16 40 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 42 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.06 1.59 5.88 -2.39 -0.01 1.57 16 44 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.06 1.54 5.88 -2.39 -0.01 1.52 16 48 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 51 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -75.77 405.34 4.57 -71.20 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.89 Total: 18.14 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 7.68 Total: 19.76 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -5.51 Total: -101.18 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -0.34 Total: -55.57 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.85 Total: 47.65 kcal Total: -75.77 4.57 -71.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492795922.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.181 kcal (2) G-P(sol) polarization free energy of solvation -75.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds