Wall clock time and date at job start Tue Mar 31 2020 21:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.46502 * 119.99711 * 299.99999 * 12 2 1 14 14 C 1.34769 * 120.00163 * 119.99832 * 12 2 1 15 15 O 1.21279 * 120.00303 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99833 * 179.97438 * 14 12 2 17 17 H 1.08994 * 115.56170 * 325.63448 * 16 14 12 18 18 C 1.53159 * 117.51721 * 111.39572 * 16 14 12 19 19 C 1.52325 * 59.82038 * 107.43520 * 18 16 14 20 20 C 1.53288 * 128.81505 * 117.90200 * 19 18 16 21 21 N 1.47720 * 85.85713 * 116.61831 * 20 19 18 22 22 C 1.34779 * 134.39192 * 204.09633 * 21 20 19 23 23 O 1.21517 * 120.00031 * 179.97438 * 22 21 20 24 24 O 1.34641 * 120.00138 * 359.97438 * 22 21 20 25 25 C 1.45195 * 116.99882 * 180.02562 * 24 22 21 26 26 C 1.52998 * 109.47579 * 59.99907 * 25 24 22 27 27 C 1.53004 * 109.46989 * 180.02562 * 25 24 22 28 28 C 1.53005 * 109.47271 * 300.00157 * 25 24 22 29 29 C 1.47717 * 91.21383 * 24.09357 * 21 20 19 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 35 35 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 36 36 H 1.09006 * 109.47241 * 329.99804 * 13 12 2 37 37 H 1.09001 * 117.51230 * 214.87926 * 18 16 14 38 38 H 1.09003 * 117.51309 * 359.94716 * 18 16 14 39 39 H 1.09005 * 113.80788 * 230.85148 * 20 19 18 40 40 H 1.08998 * 113.81357 * 2.37952 * 20 19 18 41 41 H 1.09011 * 109.46911 * 59.99880 * 26 25 24 42 42 H 1.09003 * 109.47418 * 179.97438 * 26 25 24 43 43 H 1.09000 * 109.47549 * 300.00480 * 26 25 24 44 44 H 1.08991 * 109.47120 * 59.99644 * 27 25 24 45 45 H 1.09003 * 109.47231 * 179.97438 * 27 25 24 46 46 H 1.08993 * 109.46863 * 299.99642 * 27 25 24 47 47 H 1.08999 * 109.47313 * 59.99922 * 28 25 24 48 48 H 1.08998 * 109.47639 * 180.02562 * 28 25 24 49 49 H 1.09008 * 109.46951 * 300.00311 * 28 25 24 50 50 H 1.09004 * 113.80959 * 221.67221 * 29 21 20 51 51 H 1.09001 * 113.81488 * 90.14121 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0930 -1.4282 14 6 2.7932 -0.0354 -2.0833 15 8 3.0866 1.1255 -1.8911 16 6 3.2960 -0.7459 -3.3135 17 1 3.5236 -1.8041 -3.1854 18 6 2.7330 -0.3019 -4.6669 19 6 4.1639 0.0495 -4.2803 20 6 5.4728 -0.3661 -4.9613 21 7 5.6671 1.0741 -5.2264 22 6 6.3622 1.7791 -6.1408 23 8 6.3376 2.9938 -6.1186 24 8 7.0840 1.1375 -7.0790 25 6 7.8079 1.9608 -8.0311 26 6 8.8034 2.8499 -7.2833 27 6 8.5631 1.0617 -9.0121 28 6 6.8194 2.8384 -8.8017 29 6 4.7953 1.4331 -4.0892 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.7094 1.1615 3.4845 34 1 0.7377 -2.1443 -1.9995 35 1 2.4630 -2.5817 -1.9865 36 1 1.5296 -2.5968 -0.4710 37 1 2.5909 -1.0682 -5.4290 38 1 1.9984 0.5034 -4.6669 39 1 6.2085 -0.7910 -4.2784 40 1 5.3300 -0.9639 -5.8614 41 1 9.5077 2.2247 -6.7343 42 1 9.3472 3.4676 -7.9981 43 1 8.2651 3.4904 -6.5846 44 1 7.8536 0.4287 -9.5448 45 1 9.1062 1.6797 -9.7271 46 1 9.2672 0.4364 -8.4634 47 1 6.2810 3.4789 -8.1031 48 1 7.3627 3.4561 -9.5167 49 1 6.1100 2.2050 -9.3345 50 1 4.1163 2.2596 -4.2990 51 1 5.3281 1.5471 -3.1451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492795923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:41 Heat of formation + Delta-G solvation = -42.627608 kcal Electronic energy + Delta-G solvation = -30071.187145 eV Core-core repulsion = 25973.687893 eV Total energy + Delta-G solvation = -4097.499252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.00507 -40.06765 -38.55779 -36.73873 -35.40318 -34.56302 -33.99535 -32.79089 -29.54758 -28.00187 -27.64717 -27.58759 -26.40746 -26.12338 -25.24901 -24.06734 -22.14889 -20.90901 -19.69771 -18.90832 -18.14595 -17.66386 -17.01077 -16.63451 -16.49816 -16.26257 -15.38575 -15.29964 -14.99918 -14.56644 -14.46555 -14.24835 -14.04606 -13.78404 -13.38796 -13.18496 -12.74999 -12.59461 -12.48428 -12.41793 -12.38353 -12.12067 -12.10651 -12.01374 -11.71779 -11.62699 -11.50335 -11.48016 -11.08018 -10.89604 -10.87080 -10.74361 -10.65377 -10.52709 -10.27867 -10.26429 -10.17372 -9.87400 -9.21620 -8.98459 -8.80525 -8.44124 -7.61842 -6.09090 -4.17349 1.88763 2.79155 3.04766 3.26338 3.32044 3.33354 3.56753 3.71975 3.88845 4.25652 4.39071 4.48540 4.50636 4.53047 4.67061 4.82733 5.08407 5.18196 5.20517 5.21660 5.22943 5.26984 5.29068 5.43135 5.43898 5.51070 5.51989 5.61761 5.63154 5.66725 5.75412 5.77468 5.83579 5.94701 5.98402 6.04552 6.08292 6.12908 6.36116 6.39619 6.73606 6.81713 7.04408 7.39370 7.51289 7.62851 7.69490 7.99356 8.17825 8.28313 8.50195 8.80440 9.02105 9.49132 10.96116 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.002168 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.953648 B =12914.659527 C =13237.056642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.587 5.587 13 C 0.084 3.916 14 C 0.530 3.470 15 O -0.549 6.549 16 C -0.156 4.156 17 H 0.128 0.872 18 C -0.113 4.113 19 C -0.155 4.155 20 C 0.150 3.850 21 N -0.633 5.633 22 C 0.674 3.326 23 O -0.568 6.568 24 O -0.364 6.364 25 C 0.135 3.865 26 C -0.184 4.184 27 C -0.139 4.139 28 C -0.183 4.183 29 C 0.190 3.810 30 H 0.029 0.971 31 H 0.093 0.907 32 H 0.011 0.989 33 H 0.264 0.736 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.088 0.912 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.665 -4.874 -21.467 24.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.317 5.317 13 C -0.060 4.060 14 C 0.317 3.683 15 O -0.428 6.428 16 C -0.178 4.178 17 H 0.145 0.855 18 C -0.150 4.150 19 C -0.156 4.156 20 C 0.027 3.973 21 N -0.375 5.375 22 C 0.431 3.569 23 O -0.458 6.458 24 O -0.279 6.279 25 C 0.098 3.902 26 C -0.241 4.241 27 C -0.196 4.196 28 C -0.240 4.240 29 C 0.070 3.930 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.107 0.893 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.873 -3.621 -21.394 23.838 hybrid contribution 0.336 -0.674 0.928 1.195 sum 10.209 -4.295 -20.465 23.270 Atomic orbital electron populations 1.22080 0.98175 0.99389 1.00789 1.18950 0.90873 0.94531 0.79821 0.91861 1.21265 1.31933 1.13053 0.90288 0.92301 1.24897 0.94941 0.94991 0.98978 1.69874 1.36218 1.22511 1.23892 0.86551 0.79231 0.79546 0.82012 1.20255 1.21181 1.20243 1.48168 1.48561 1.11696 1.23293 1.21626 0.98844 0.83244 1.02283 1.19363 0.79219 0.86551 0.83199 1.90648 1.58640 1.16952 1.76607 1.22367 1.04075 1.00260 0.91107 0.85473 1.22799 0.93738 1.02964 0.95539 1.22433 0.92496 0.97645 1.03062 1.22675 0.93061 0.82613 0.98903 1.48678 1.49586 1.09038 1.30213 1.17416 0.77136 0.83420 0.78952 1.90902 1.67151 1.12003 1.75734 1.86299 1.59665 1.41152 1.40791 1.22052 0.90933 0.90343 0.86850 1.22517 0.99086 1.00550 1.01921 1.21846 1.00099 0.99831 0.97868 1.22519 0.99752 1.00611 1.01157 1.22548 0.88236 0.95571 0.86642 0.95172 0.88857 0.97040 0.92605 0.93820 0.92707 0.90186 0.87458 0.87668 0.88863 0.89594 0.92221 0.91210 0.89322 0.91534 0.90205 0.91524 0.89310 0.91241 0.92236 0.89325 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.40 2.64 -69.08 -0.18 6.22 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.53 -13.86 7.99 -34.44 -0.28 -14.14 16 5 H 0.06 1.51 7.33 -52.48 -0.38 1.13 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.79 11.32 55.43 0.63 -24.16 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.59 -11.85 2.75 -175.26 -0.48 -12.34 16 13 C 0.08 1.31 9.26 59.85 0.55 1.86 16 14 C 0.53 10.14 7.46 -10.99 -0.08 10.06 16 15 O -0.55 -12.53 14.46 5.56 0.08 -12.44 16 16 C -0.16 -2.07 5.29 -92.03 -0.49 -2.55 16 17 H 0.13 1.37 6.44 -51.93 -0.33 1.03 16 18 C -0.11 -1.26 10.24 -26.99 -0.28 -1.53 16 19 C -0.15 -1.91 3.03 -155.02 -0.47 -2.38 16 20 C 0.15 1.57 8.89 -3.23 -0.03 1.54 16 21 N -0.63 -8.63 3.61 -187.59 -0.68 -9.31 16 22 C 0.67 9.97 8.22 54.06 0.44 10.41 16 23 O -0.57 -9.66 12.61 -19.29 -0.24 -9.90 16 24 O -0.36 -4.63 9.87 -40.33 -0.40 -5.03 16 25 C 0.14 1.38 1.13 -90.62 -0.10 1.28 16 26 C -0.18 -1.86 8.37 37.16 0.31 -1.55 16 27 C -0.14 -0.99 8.85 37.16 0.33 -0.66 16 28 C -0.18 -1.83 8.37 37.16 0.31 -1.51 16 29 C 0.19 2.78 7.27 -3.23 -0.02 2.76 16 30 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 31 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.67 6.00 -51.92 -0.31 0.36 16 36 H 0.08 1.35 7.02 -51.93 -0.36 0.99 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.14 5.88 -51.93 -0.31 0.84 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 50 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 51 H 0.10 1.59 8.01 -51.93 -0.42 1.17 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -32.19 406.25 -8.28 -40.47 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.55 Total: 2.52 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 0.26 Total: 8.37 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.53 Total: -45.80 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.56 Total: -27.37 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.19 -8.28 -40.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492795923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.159 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds