Wall clock time and date at job start Tue Mar 31 2020 21:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.46502 * 119.99711 * 299.99999 * 12 2 1 14 14 C 1.34769 * 120.00163 * 119.99832 * 12 2 1 15 15 O 1.21279 * 120.00303 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99833 * 179.97438 * 14 12 2 17 17 H 1.08994 * 115.56170 * 325.63448 * 16 14 12 18 18 C 1.53159 * 117.51721 * 111.39572 * 16 14 12 19 19 C 1.52325 * 59.82038 * 107.43520 * 18 16 14 20 20 C 1.53288 * 128.81505 * 117.90200 * 19 18 16 21 21 N 1.47720 * 85.85713 * 116.61831 * 20 19 18 22 22 C 1.34779 * 134.39192 * 204.09633 * 21 20 19 23 23 O 1.21517 * 120.00031 * 179.97438 * 22 21 20 24 24 O 1.34641 * 120.00138 * 359.97438 * 22 21 20 25 25 C 1.45195 * 116.99882 * 180.02562 * 24 22 21 26 26 C 1.52998 * 109.47579 * 59.99907 * 25 24 22 27 27 C 1.53004 * 109.46989 * 180.02562 * 25 24 22 28 28 C 1.53005 * 109.47271 * 300.00157 * 25 24 22 29 29 C 1.47717 * 91.21383 * 24.09357 * 21 20 19 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 35 35 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 36 36 H 1.09006 * 109.47241 * 329.99804 * 13 12 2 37 37 H 1.09001 * 117.51230 * 214.87926 * 18 16 14 38 38 H 1.09003 * 117.51309 * 359.94716 * 18 16 14 39 39 H 1.09005 * 113.80788 * 230.85148 * 20 19 18 40 40 H 1.08998 * 113.81357 * 2.37952 * 20 19 18 41 41 H 1.09011 * 109.46911 * 59.99880 * 26 25 24 42 42 H 1.09003 * 109.47418 * 179.97438 * 26 25 24 43 43 H 1.09000 * 109.47549 * 300.00480 * 26 25 24 44 44 H 1.08991 * 109.47120 * 59.99644 * 27 25 24 45 45 H 1.09003 * 109.47231 * 179.97438 * 27 25 24 46 46 H 1.08993 * 109.46863 * 299.99642 * 27 25 24 47 47 H 1.08999 * 109.47313 * 59.99922 * 28 25 24 48 48 H 1.08998 * 109.47639 * 180.02562 * 28 25 24 49 49 H 1.09008 * 109.46951 * 300.00311 * 28 25 24 50 50 H 1.09004 * 113.80959 * 221.67221 * 29 21 20 51 51 H 1.09001 * 113.81488 * 90.14121 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0930 -1.4282 14 6 2.7932 -0.0354 -2.0833 15 8 3.0866 1.1255 -1.8911 16 6 3.2960 -0.7459 -3.3135 17 1 3.5236 -1.8041 -3.1854 18 6 2.7330 -0.3019 -4.6669 19 6 4.1639 0.0495 -4.2803 20 6 5.4728 -0.3661 -4.9613 21 7 5.6671 1.0741 -5.2264 22 6 6.3622 1.7791 -6.1408 23 8 6.3376 2.9938 -6.1186 24 8 7.0840 1.1375 -7.0790 25 6 7.8079 1.9608 -8.0311 26 6 8.8034 2.8499 -7.2833 27 6 8.5631 1.0617 -9.0121 28 6 6.8194 2.8384 -8.8017 29 6 4.7953 1.4331 -4.0892 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.7094 1.1615 3.4845 34 1 0.7377 -2.1443 -1.9995 35 1 2.4630 -2.5817 -1.9865 36 1 1.5296 -2.5968 -0.4710 37 1 2.5909 -1.0682 -5.4290 38 1 1.9984 0.5034 -4.6669 39 1 6.2085 -0.7910 -4.2784 40 1 5.3300 -0.9639 -5.8614 41 1 9.5077 2.2247 -6.7343 42 1 9.3472 3.4676 -7.9981 43 1 8.2651 3.4904 -6.5846 44 1 7.8536 0.4287 -9.5448 45 1 9.1062 1.6797 -9.7271 46 1 9.2672 0.4364 -8.4634 47 1 6.2810 3.4789 -8.1031 48 1 7.3627 3.4561 -9.5167 49 1 6.1100 2.2050 -9.3345 50 1 4.1163 2.2596 -4.2990 51 1 5.3281 1.5471 -3.1451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492795923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:40 Heat of formation + Delta-G solvation = -62.446766 kcal Electronic energy + Delta-G solvation = -30072.046569 eV Core-core repulsion = 25973.687893 eV Total energy + Delta-G solvation = -4098.358675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.05584 -41.21406 -39.88904 -37.81171 -37.05869 -35.70497 -34.92285 -34.62685 -31.39201 -29.06214 -28.37909 -28.29178 -27.49098 -27.39974 -27.28615 -25.39224 -23.10319 -22.43015 -20.79545 -20.06736 -19.34983 -18.75592 -18.49561 -18.13954 -17.63743 -17.48651 -17.03493 -16.29899 -16.19499 -15.99996 -15.85272 -15.19758 -15.07316 -14.84972 -14.73893 -14.35258 -14.16919 -13.81019 -13.69244 -13.50933 -13.33436 -13.15352 -13.05960 -13.02343 -12.89709 -12.86626 -12.79979 -12.72692 -12.60172 -12.52054 -12.37200 -12.17499 -12.11636 -11.88014 -11.65348 -11.40989 -11.26623 -11.17533 -10.90754 -10.60476 -10.41568 -9.88781 -9.26188 -8.12995 -6.29413 0.88189 1.42207 1.44684 1.51794 1.65065 1.76049 2.28761 2.46278 2.67026 2.88522 3.14982 3.17805 3.46434 3.75221 3.77480 3.80048 3.94366 3.99773 4.18915 4.23869 4.43186 4.45428 4.51768 4.60372 4.61022 4.63952 4.69612 4.75499 4.79462 4.82101 4.83155 4.86414 4.86711 4.88258 4.91724 4.93391 5.04933 5.10139 5.13110 5.16702 5.27177 5.33301 5.46267 5.50295 5.63942 5.70065 6.07022 6.18938 6.58619 6.79156 6.90747 7.19715 7.35335 7.54261 8.90941 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.002168 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.953648 B =12914.659527 C =13237.056642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.262 3.738 3 H 0.006 0.994 4 C -0.535 4.535 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.260 1.260 12 N -0.597 5.597 13 C 0.080 3.920 14 C 0.517 3.483 15 O -0.601 6.601 16 C -0.153 4.153 17 H 0.167 0.833 18 C -0.091 4.091 19 C -0.155 4.155 20 C 0.163 3.837 21 N -0.637 5.637 22 C 0.669 3.331 23 O -0.601 6.601 24 O -0.361 6.361 25 C 0.122 3.878 26 C -0.181 4.181 27 C -0.132 4.132 28 C -0.179 4.179 29 C 0.179 3.821 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.018 0.982 33 H 0.263 0.737 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.155 0.845 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.092 0.908 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.755 -8.668 -23.956 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.160 3.840 3 H 0.024 0.976 4 C -0.574 4.574 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.327 5.327 13 C -0.062 4.062 14 C 0.306 3.694 15 O -0.484 6.484 16 C -0.174 4.174 17 H 0.184 0.816 18 C -0.128 4.128 19 C -0.156 4.156 20 C 0.043 3.957 21 N -0.379 5.379 22 C 0.425 3.575 23 O -0.493 6.493 24 O -0.276 6.276 25 C 0.086 3.914 26 C -0.238 4.238 27 C -0.189 4.189 28 C -0.236 4.236 29 C 0.058 3.942 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.172 0.828 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.112 0.888 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.122 0.878 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.963 -7.487 -23.917 27.354 hybrid contribution 0.015 0.622 1.667 1.780 sum 10.978 -6.864 -22.249 25.742 Atomic orbital electron populations 1.21857 0.97311 1.00056 0.99736 1.18492 0.91484 0.92174 0.81887 0.97568 1.21561 1.31722 1.13048 0.91056 0.91829 1.25763 0.95173 0.95688 1.02133 1.70032 1.37433 1.23957 1.24379 0.85517 0.78373 0.79052 0.78117 1.20293 1.21238 1.18495 1.48163 1.48804 1.13564 1.22122 1.21890 1.01515 0.80350 1.02465 1.20422 0.78179 0.86243 0.84523 1.90632 1.60189 1.19575 1.77981 1.22276 1.05063 1.01282 0.88828 0.81575 1.22993 0.91998 1.03107 0.94691 1.22450 0.94231 0.95676 1.03257 1.22873 0.91714 0.80923 1.00223 1.48771 1.48987 1.10710 1.29411 1.17626 0.77242 0.83187 0.79403 1.90892 1.68188 1.13624 1.76600 1.86310 1.59325 1.41372 1.40559 1.22480 0.90911 0.91155 0.86878 1.22480 0.98953 1.00441 1.01912 1.21865 0.99992 0.99720 0.97316 1.22471 0.99900 1.00482 1.00794 1.22394 0.88552 0.96877 0.86378 0.93406 0.91675 0.96291 0.92765 0.91717 0.88455 0.91684 0.82765 0.89466 0.87376 0.86307 0.91956 0.88802 0.92745 0.90876 0.87843 0.91124 0.92697 0.88886 0.91669 0.91867 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.28 8.97 71.98 0.65 -5.64 16 2 C 0.26 13.45 2.64 44.25 0.12 13.56 16 3 H 0.01 0.39 6.90 -2.39 -0.02 0.38 16 4 C -0.54 -28.64 7.99 25.60 0.20 -28.44 16 5 H 0.06 3.26 7.33 -2.91 -0.02 3.24 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -53.23 11.32 21.45 0.24 -52.98 16 8 Si 0.96 42.77 29.54 68.60 2.03 44.79 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 12 N -0.60 -23.96 2.75 -826.78 -2.28 -26.24 16 13 C 0.08 2.26 9.26 127.77 1.18 3.45 16 14 C 0.52 19.88 7.46 87.66 0.65 20.53 16 15 O -0.60 -29.16 14.46 -3.03 -0.04 -29.20 16 16 C -0.15 -3.63 5.29 -11.71 -0.06 -3.69 16 17 H 0.17 2.65 6.44 -2.39 -0.02 2.63 16 18 C -0.09 -1.73 10.24 30.42 0.31 -1.41 16 19 C -0.15 -3.53 3.03 -52.39 -0.16 -3.69 16 20 C 0.16 2.92 8.89 86.24 0.77 3.68 16 21 N -0.64 -17.19 3.61 -977.83 -3.53 -20.72 16 22 C 0.67 19.98 8.22 129.79 1.07 21.05 16 23 O -0.60 -21.63 12.61 19.79 0.25 -21.38 16 24 O -0.36 -8.74 9.87 -55.50 -0.55 -9.29 16 25 C 0.12 2.31 1.13 -10.79 -0.01 2.30 16 26 C -0.18 -3.55 8.37 71.98 0.60 -2.95 16 27 C -0.13 -1.46 8.85 71.98 0.64 -0.83 16 28 C -0.18 -3.41 8.37 71.98 0.60 -2.81 16 29 C 0.18 5.52 7.27 86.24 0.63 6.14 16 30 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 31 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 1.91 6.00 -2.38 -0.01 1.89 16 36 H 0.06 2.05 7.02 -2.38 -0.02 2.04 16 37 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.05 1.47 5.88 -2.39 -0.01 1.46 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.05 1.45 5.88 -2.39 -0.01 1.43 16 48 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 50 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 51 H 0.08 2.73 8.01 -2.39 -0.02 2.71 16 Total: -1.00 -77.76 406.25 4.67 -73.09 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.91 Total: 19.56 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 7.63 Total: 22.36 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -5.56 Total: -99.94 kcal Atomic # 8 Polarization: -59.53 SS G_CDS: -0.34 Total: -59.87 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -77.76 4.67 -73.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492795923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.644 kcal (2) G-P(sol) polarization free energy of solvation -77.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds