Wall clock time and date at job start Tue Mar 31 2020 21:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.46499 * 120.00271 * 300.00476 * 12 2 1 14 14 C 1.34783 * 119.99826 * 120.00322 * 12 2 1 15 15 O 1.21278 * 120.00109 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00065 * 180.02562 * 14 12 2 17 17 H 1.08995 * 115.56016 * 34.41297 * 16 14 12 18 18 C 1.53152 * 117.51746 * 248.66530 * 16 14 12 19 19 C 1.52320 * 117.51503 * 180.16937 * 16 14 12 20 20 C 1.53286 * 128.82243 * 349.53940 * 19 16 14 21 21 N 1.47725 * 85.85825 * 196.99037 * 20 19 16 22 22 C 1.34781 * 134.39186 * 204.09638 * 21 20 19 23 23 O 1.21508 * 119.99646 * 179.97438 * 22 21 20 24 24 O 1.34635 * 119.99730 * 359.97438 * 22 21 20 25 25 C 1.45202 * 116.99618 * 180.02562 * 24 22 21 26 26 C 1.53000 * 109.47235 * 59.99725 * 25 24 22 27 27 C 1.52996 * 109.47306 * 179.97438 * 25 24 22 28 28 C 1.53004 * 109.47247 * 299.99841 * 25 24 22 29 29 C 1.47717 * 91.21144 * 24.09546 * 21 20 19 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47057 * 89.99771 * 13 12 2 35 35 H 1.09006 * 109.46711 * 209.99932 * 13 12 2 36 36 H 1.08998 * 109.46853 * 329.99725 * 13 12 2 37 37 H 1.09009 * 117.51339 * 0.02562 * 18 16 14 38 38 H 1.08993 * 117.51995 * 145.07605 * 18 16 14 39 39 H 1.09003 * 113.81185 * 311.22589 * 20 19 16 40 40 H 1.09002 * 113.81197 * 82.75312 * 20 19 16 41 41 H 1.09003 * 109.46931 * 59.99789 * 26 25 24 42 42 H 1.08999 * 109.47534 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.47573 * 300.00008 * 26 25 24 44 44 H 1.09004 * 109.47056 * 60.00310 * 27 25 24 45 45 H 1.08996 * 109.47376 * 179.97438 * 27 25 24 46 46 H 1.09003 * 109.47014 * 300.00305 * 27 25 24 47 47 H 1.08998 * 109.47132 * 59.99933 * 28 25 24 48 48 H 1.08999 * 109.47180 * 179.97438 * 28 25 24 49 49 H 1.08994 * 109.46932 * 300.00487 * 28 25 24 50 50 H 1.09005 * 113.80932 * 221.67734 * 29 21 20 51 51 H 1.08995 * 113.81232 * 90.14538 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0834 15 8 3.0859 1.1255 -1.8917 16 6 3.2950 -0.7460 -3.3141 17 1 2.6153 -1.4829 -3.7418 18 6 4.7967 -1.0335 -3.4023 19 6 4.1697 0.0468 -4.2767 20 6 4.4552 1.5527 -4.2976 21 7 4.9236 1.3361 -5.6817 22 6 5.7707 1.9874 -6.5033 23 8 5.9723 1.5669 -7.6253 24 8 6.3932 3.1038 -6.0807 25 6 7.2910 3.7533 -7.0190 26 6 6.5112 4.1655 -8.2691 27 6 7.9001 4.9955 -6.3658 28 6 8.4075 2.7834 -7.4113 29 6 4.0932 0.1208 -5.8059 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.9040 -0.5274 4.4375 34 1 0.7374 -2.1443 -1.9993 35 1 2.4628 -2.5819 -1.9864 36 1 1.5294 -2.5969 -0.4708 37 1 5.4213 -0.7091 -2.5699 38 1 5.1045 -1.9594 -3.8880 39 1 3.5604 2.1713 -4.2276 40 1 5.2425 1.8610 -3.6097 41 1 5.7157 4.8564 -7.9897 42 1 7.1852 4.6526 -8.9738 43 1 6.0769 3.2808 -8.7348 44 1 8.4557 4.7021 -5.4751 45 1 8.5744 5.4827 -7.0700 46 1 7.1045 5.6863 -6.0867 47 1 7.9733 1.8986 -7.8768 48 1 9.0812 3.2707 -8.1160 49 1 8.9631 2.4896 -6.5207 50 1 4.5940 -0.7046 -6.3119 51 1 3.0900 0.3104 -6.1877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492795924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:43 Heat of formation + Delta-G solvation = -35.297153 kcal Electronic energy + Delta-G solvation = -30220.156721 eV Core-core repulsion = 26122.975341 eV Total energy + Delta-G solvation = -4097.181380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.04884 -40.13202 -38.70278 -36.79005 -35.59486 -34.63025 -34.00720 -32.72688 -30.47083 -28.08913 -27.62316 -27.59376 -26.43751 -26.25515 -25.22446 -24.21532 -22.19718 -20.98757 -19.71026 -18.94896 -18.19806 -17.78542 -17.20189 -16.77616 -16.49772 -16.27284 -15.70716 -15.30147 -15.08480 -14.72368 -14.59122 -14.24137 -14.13830 -13.74881 -13.45553 -13.23525 -12.91207 -12.70355 -12.60935 -12.43518 -12.39482 -12.24870 -12.13083 -12.10108 -12.05916 -11.90807 -11.67597 -11.56826 -11.48115 -11.20927 -10.95560 -10.77661 -10.68371 -10.52847 -10.34044 -10.18392 -9.93172 -9.67658 -9.39128 -9.10339 -8.86919 -8.67218 -7.78829 -6.18538 -4.19447 1.84791 2.73397 2.93747 3.20691 3.34512 3.36416 3.51275 3.59283 3.85425 4.20308 4.31710 4.42250 4.50203 4.54700 4.68300 4.76632 5.06611 5.09227 5.13548 5.18093 5.22659 5.24070 5.30576 5.39455 5.46161 5.47372 5.53316 5.60258 5.62998 5.68323 5.71029 5.76587 5.79747 5.86428 5.91770 5.94372 6.06169 6.10478 6.21216 6.23501 6.33701 6.38170 6.45164 6.78731 7.08169 7.30435 7.57158 7.58333 8.13142 8.23640 8.42494 8.79028 8.85568 9.42408 10.94066 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.002396 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.090591 B =11684.698008 C =12412.790342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.230 3.770 3 H 0.063 0.937 4 C -0.528 4.528 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.582 5.582 13 C 0.082 3.918 14 C 0.534 3.466 15 O -0.550 6.550 16 C -0.156 4.156 17 H 0.127 0.873 18 C -0.111 4.111 19 C -0.155 4.155 20 C 0.165 3.835 21 N -0.633 5.633 22 C 0.677 3.323 23 O -0.575 6.575 24 O -0.359 6.359 25 C 0.135 3.865 26 C -0.183 4.183 27 C -0.141 4.141 28 C -0.183 4.183 29 C 0.175 3.825 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.266 0.734 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.088 0.912 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.365 3.315 -21.179 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.128 3.872 3 H 0.080 0.920 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.188 1.188 12 N -0.312 5.312 13 C -0.062 4.062 14 C 0.321 3.679 15 O -0.429 6.429 16 C -0.178 4.178 17 H 0.145 0.855 18 C -0.148 4.148 19 C -0.157 4.157 20 C 0.043 3.957 21 N -0.376 5.376 22 C 0.434 3.566 23 O -0.466 6.466 24 O -0.274 6.274 25 C 0.098 3.902 26 C -0.240 4.240 27 C -0.198 4.198 28 C -0.240 4.240 29 C 0.054 3.946 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.079 0.921 50 H 0.106 0.894 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.770 3.974 -21.349 22.746 hybrid contribution -0.741 0.610 0.302 1.006 sum 6.029 4.583 -21.047 22.368 Atomic orbital electron populations 1.22445 0.99067 1.01103 0.99216 1.19295 0.89963 0.95199 0.82754 0.91952 1.21147 1.32750 1.14288 0.88459 0.90283 1.24864 0.95651 0.96576 0.95639 1.69871 1.45129 1.40182 0.97996 0.86915 0.80415 0.83840 0.77499 1.20420 1.22163 1.18796 1.47782 1.48914 1.11869 1.22595 1.21676 0.98934 0.82734 1.02869 1.19406 0.78901 0.86479 0.83113 1.90636 1.58452 1.16983 1.76803 1.22277 0.95575 1.02775 0.97124 0.85505 1.22855 0.93113 0.98210 1.00654 1.22483 1.05464 0.95079 0.92661 1.22600 0.99636 0.93404 0.80029 1.48593 1.43689 1.28922 1.16364 1.17390 0.78291 0.78925 0.82030 1.90874 1.67590 1.69191 1.18901 1.86349 1.56899 1.37943 1.46192 1.22071 0.88012 0.92051 0.88071 1.22511 1.00847 1.03464 0.97160 1.21858 1.01081 0.95275 1.01599 1.22513 0.97910 1.01247 1.02320 1.22590 0.94245 0.85053 0.92672 0.94863 0.92574 0.93198 0.92404 0.93776 0.92201 0.89616 0.87374 0.87286 0.88374 0.89311 0.92189 0.91208 0.89467 0.91371 0.90195 0.91413 0.89433 0.91237 0.92124 0.89406 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 8.68 37.16 0.32 -3.00 16 2 C 0.23 5.30 2.23 -69.08 -0.15 5.15 16 3 H 0.06 1.61 5.96 -51.93 -0.31 1.30 16 4 C -0.53 -14.10 8.57 -34.44 -0.30 -14.40 16 5 H 0.08 2.27 7.58 -52.49 -0.40 1.87 16 6 C 0.08 2.10 5.45 -17.82 -0.10 2.01 16 7 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 8 Si 0.88 21.41 24.37 -169.99 -4.14 17.26 16 9 H -0.28 -6.44 6.87 56.52 0.39 -6.05 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 12 N -0.58 -11.12 2.75 -175.26 -0.48 -11.61 16 13 C 0.08 1.22 9.00 59.85 0.54 1.76 16 14 C 0.53 9.62 7.46 -10.98 -0.08 9.54 16 15 O -0.55 -11.69 14.46 5.56 0.08 -11.61 16 16 C -0.16 -1.95 4.79 -92.04 -0.44 -2.39 16 17 H 0.13 1.25 7.27 -51.93 -0.38 0.87 16 18 C -0.11 -1.24 10.24 -26.93 -0.28 -1.52 16 19 C -0.16 -1.82 3.04 -154.95 -0.47 -2.29 16 20 C 0.16 2.20 7.31 -3.23 -0.02 2.17 16 21 N -0.63 -8.28 3.61 -187.57 -0.68 -8.96 16 22 C 0.68 9.73 8.22 54.06 0.44 10.17 16 23 O -0.58 -8.94 12.61 -19.28 -0.24 -9.19 16 24 O -0.36 -4.87 9.87 -40.31 -0.40 -5.26 16 25 C 0.13 1.43 1.13 -90.62 -0.10 1.33 16 26 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 27 C -0.14 -1.15 8.85 37.16 0.33 -0.82 16 28 C -0.18 -1.83 8.37 37.16 0.31 -1.52 16 29 C 0.18 1.82 8.85 -3.23 -0.03 1.79 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.08 7.67 -51.93 -0.40 0.68 16 32 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.72 6.64 -51.93 -0.34 0.37 16 36 H 0.09 1.45 7.02 -51.93 -0.36 1.08 16 37 H 0.11 1.38 8.14 -51.92 -0.42 0.95 16 38 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.36 8.01 -51.93 -0.42 0.94 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 400.17 15.07 6.03 6.03 Total: -1.00 -33.05 400.17 -7.26 -40.31 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.49 Total: 2.16 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 0.29 Total: 6.47 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.39 Total: -46.18 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.56 Total: -26.06 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.14 Total: 17.26 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.05 -7.26 -40.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492795924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.013 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds