Wall clock time and date at job start Tue Mar 31 2020 21:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.46499 * 120.00271 * 300.00476 * 12 2 1 14 14 C 1.34783 * 119.99826 * 120.00322 * 12 2 1 15 15 O 1.21278 * 120.00109 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00065 * 180.02562 * 14 12 2 17 17 H 1.08995 * 115.56016 * 34.41297 * 16 14 12 18 18 C 1.53152 * 117.51746 * 248.66530 * 16 14 12 19 19 C 1.52320 * 117.51503 * 180.16937 * 16 14 12 20 20 C 1.53286 * 128.82243 * 349.53940 * 19 16 14 21 21 N 1.47725 * 85.85825 * 196.99037 * 20 19 16 22 22 C 1.34781 * 134.39186 * 204.09638 * 21 20 19 23 23 O 1.21508 * 119.99646 * 179.97438 * 22 21 20 24 24 O 1.34635 * 119.99730 * 359.97438 * 22 21 20 25 25 C 1.45202 * 116.99618 * 180.02562 * 24 22 21 26 26 C 1.53000 * 109.47235 * 59.99725 * 25 24 22 27 27 C 1.52996 * 109.47306 * 179.97438 * 25 24 22 28 28 C 1.53004 * 109.47247 * 299.99841 * 25 24 22 29 29 C 1.47717 * 91.21144 * 24.09546 * 21 20 19 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47057 * 89.99771 * 13 12 2 35 35 H 1.09006 * 109.46711 * 209.99932 * 13 12 2 36 36 H 1.08998 * 109.46853 * 329.99725 * 13 12 2 37 37 H 1.09009 * 117.51339 * 0.02562 * 18 16 14 38 38 H 1.08993 * 117.51995 * 145.07605 * 18 16 14 39 39 H 1.09003 * 113.81185 * 311.22589 * 20 19 16 40 40 H 1.09002 * 113.81197 * 82.75312 * 20 19 16 41 41 H 1.09003 * 109.46931 * 59.99789 * 26 25 24 42 42 H 1.08999 * 109.47534 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.47573 * 300.00008 * 26 25 24 44 44 H 1.09004 * 109.47056 * 60.00310 * 27 25 24 45 45 H 1.08996 * 109.47376 * 179.97438 * 27 25 24 46 46 H 1.09003 * 109.47014 * 300.00305 * 27 25 24 47 47 H 1.08998 * 109.47132 * 59.99933 * 28 25 24 48 48 H 1.08999 * 109.47180 * 179.97438 * 28 25 24 49 49 H 1.08994 * 109.46932 * 300.00487 * 28 25 24 50 50 H 1.09005 * 113.80932 * 221.67734 * 29 21 20 51 51 H 1.08995 * 113.81232 * 90.14538 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0834 15 8 3.0859 1.1255 -1.8917 16 6 3.2950 -0.7460 -3.3141 17 1 2.6153 -1.4829 -3.7418 18 6 4.7967 -1.0335 -3.4023 19 6 4.1697 0.0468 -4.2767 20 6 4.4552 1.5527 -4.2976 21 7 4.9236 1.3361 -5.6817 22 6 5.7707 1.9874 -6.5033 23 8 5.9723 1.5669 -7.6253 24 8 6.3932 3.1038 -6.0807 25 6 7.2910 3.7533 -7.0190 26 6 6.5112 4.1655 -8.2691 27 6 7.9001 4.9955 -6.3658 28 6 8.4075 2.7834 -7.4113 29 6 4.0932 0.1208 -5.8059 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.9040 -0.5274 4.4375 34 1 0.7374 -2.1443 -1.9993 35 1 2.4628 -2.5819 -1.9864 36 1 1.5294 -2.5969 -0.4708 37 1 5.4213 -0.7091 -2.5699 38 1 5.1045 -1.9594 -3.8880 39 1 3.5604 2.1713 -4.2276 40 1 5.2425 1.8610 -3.6097 41 1 5.7157 4.8564 -7.9897 42 1 7.1852 4.6526 -8.9738 43 1 6.0769 3.2808 -8.7348 44 1 8.4557 4.7021 -5.4751 45 1 8.5744 5.4827 -7.0700 46 1 7.1045 5.6863 -6.0867 47 1 7.9733 1.8986 -7.8768 48 1 9.0812 3.2707 -8.1160 49 1 8.9631 2.4896 -6.5207 50 1 4.5940 -0.7046 -6.3119 51 1 3.0900 0.3104 -6.1877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492795924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:42 Heat of formation + Delta-G solvation = -56.823279 kcal Electronic energy + Delta-G solvation = -30221.090164 eV Core-core repulsion = 26122.975341 eV Total energy + Delta-G solvation = -4098.114822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.06273 -41.25063 -39.95709 -37.83353 -37.15049 -35.71354 -34.93220 -34.62768 -32.23857 -29.07627 -28.37691 -28.32861 -27.57430 -27.37706 -27.15615 -25.53534 -23.13812 -22.43351 -20.76826 -20.09150 -19.37154 -18.94985 -18.78278 -17.98719 -17.70333 -17.51470 -17.23430 -16.46089 -16.11676 -16.05630 -15.82804 -15.28194 -15.13094 -14.95873 -14.72308 -14.64712 -14.18686 -14.07056 -13.83144 -13.68728 -13.52276 -13.36665 -13.16458 -13.05797 -13.00391 -12.91974 -12.90428 -12.89061 -12.62558 -12.53062 -12.36943 -12.03982 -11.92290 -11.64859 -11.58621 -11.41772 -11.33681 -11.27292 -10.91699 -10.78407 -10.56121 -9.87870 -9.33101 -8.34124 -6.37868 0.92725 1.26506 1.36186 1.44289 1.61013 1.72395 2.22895 2.28183 2.61135 2.85731 3.01840 3.16286 3.43469 3.73076 3.76684 3.78932 3.92672 3.94712 4.17281 4.23042 4.43897 4.48463 4.51396 4.52657 4.56627 4.60009 4.60974 4.61584 4.64521 4.71840 4.74093 4.79921 4.83271 4.84917 4.85573 4.86794 4.92777 5.02585 5.05350 5.09252 5.15568 5.26134 5.30395 5.35055 5.46059 5.52544 5.76543 6.22231 6.54401 6.64957 6.80469 7.19864 7.23948 7.43012 8.81814 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.002396 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.090591 B =11684.698008 C =12412.790342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.232 3.768 3 H 0.031 0.969 4 C -0.522 4.522 5 H 0.047 0.953 6 C 0.022 3.978 7 N -0.940 5.940 8 Si 0.940 3.060 9 H -0.255 1.255 10 H -0.298 1.298 11 H -0.262 1.262 12 N -0.592 5.592 13 C 0.078 3.922 14 C 0.524 3.476 15 O -0.592 6.592 16 C -0.150 4.150 17 H 0.168 0.832 18 C -0.102 4.102 19 C -0.151 4.151 20 C 0.160 3.840 21 N -0.637 5.637 22 C 0.670 3.330 23 O -0.590 6.590 24 O -0.375 6.375 25 C 0.120 3.880 26 C -0.177 4.177 27 C -0.137 4.137 28 C -0.177 4.177 29 C 0.182 3.818 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.267 0.733 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.148 0.852 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.057 0.943 50 H 0.107 0.893 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.735 2.954 -23.788 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.128 3.872 3 H 0.049 0.951 4 C -0.561 4.561 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.580 5.580 8 Si 0.767 3.233 9 H -0.181 1.181 10 H -0.226 1.226 11 H -0.186 1.186 12 N -0.322 5.322 13 C -0.064 4.064 14 C 0.313 3.687 15 O -0.474 6.474 16 C -0.171 4.171 17 H 0.185 0.815 18 C -0.139 4.139 19 C -0.152 4.152 20 C 0.038 3.962 21 N -0.380 5.380 22 C 0.427 3.573 23 O -0.482 6.482 24 O -0.290 6.290 25 C 0.084 3.916 26 C -0.234 4.234 27 C -0.194 4.194 28 C -0.234 4.234 29 C 0.063 3.937 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.166 0.834 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.126 0.874 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.113 0.887 49 H 0.076 0.924 50 H 0.125 0.875 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.124 3.578 -23.986 25.013 hybrid contribution -0.431 0.725 1.098 1.384 sum 5.693 4.302 -22.888 23.974 Atomic orbital electron populations 1.22296 0.96742 1.02240 0.99775 1.18925 0.91684 0.93428 0.83142 0.95127 1.21385 1.31477 1.13058 0.90173 0.93471 1.25631 0.97200 0.99394 0.95444 1.70000 1.47225 1.42172 0.98578 0.85999 0.79897 0.80357 0.77020 1.18056 1.22614 1.18631 1.47852 1.49308 1.13484 1.21561 1.21897 1.01803 0.80207 1.02458 1.20347 0.77801 0.86264 0.84287 1.90617 1.59626 1.19148 1.78033 1.22232 0.96878 1.03299 0.94682 0.81491 1.22999 0.91595 0.99447 0.99856 1.22454 1.05283 0.93808 0.93687 1.22504 0.98626 0.94961 0.80115 1.48771 1.43635 1.29569 1.15993 1.17582 0.78518 0.79155 0.82039 1.90862 1.68219 1.69691 1.19451 1.86358 1.57357 1.37830 1.47429 1.22483 0.87926 0.92872 0.88306 1.22453 1.01236 1.02482 0.97217 1.21894 1.01290 0.94139 1.02067 1.22455 0.97939 1.00436 1.02580 1.22788 0.95023 0.84485 0.91400 0.92519 0.91151 0.94294 0.92350 0.90578 0.88814 0.92216 0.89606 0.83429 0.89344 0.91230 0.92330 0.88658 0.91806 0.91690 0.87436 0.91620 0.91755 0.88687 0.92377 0.87524 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.07 8.68 71.98 0.62 -5.44 16 2 C 0.23 10.71 2.23 44.25 0.10 10.80 16 3 H 0.03 1.62 5.96 -2.39 -0.01 1.60 16 4 C -0.52 -28.57 8.57 25.60 0.22 -28.35 16 5 H 0.05 2.81 7.58 -2.91 -0.02 2.79 16 6 C 0.02 1.24 5.45 84.65 0.46 1.70 16 7 N -0.94 -57.07 13.96 21.45 0.30 -56.77 16 8 Si 0.94 44.60 24.37 68.60 1.67 46.27 16 9 H -0.26 -11.12 6.87 99.48 0.68 -10.44 16 10 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 11 H -0.26 -12.23 6.53 99.48 0.65 -11.58 16 12 N -0.59 -22.04 2.75 -826.79 -2.28 -24.31 16 13 C 0.08 2.15 9.00 127.77 1.15 3.30 16 14 C 0.52 18.40 7.46 87.66 0.65 19.05 16 15 O -0.59 -25.70 14.46 -3.02 -0.04 -25.74 16 16 C -0.15 -3.31 4.79 -11.71 -0.06 -3.37 16 17 H 0.17 2.38 7.27 -2.39 -0.02 2.37 16 18 C -0.10 -2.02 10.24 30.47 0.31 -1.71 16 19 C -0.15 -3.23 3.04 -52.35 -0.16 -3.39 16 20 C 0.16 4.29 7.31 86.24 0.63 4.92 16 21 N -0.64 -16.19 3.61 -977.76 -3.53 -19.72 16 22 C 0.67 19.16 8.22 129.79 1.07 20.23 16 23 O -0.59 -18.18 12.61 19.81 0.25 -17.93 16 24 O -0.37 -10.25 9.87 -55.44 -0.55 -10.80 16 25 C 0.12 2.47 1.13 -10.79 -0.01 2.45 16 26 C -0.18 -3.35 8.37 71.98 0.60 -2.75 16 27 C -0.14 -2.04 8.85 71.98 0.64 -1.40 16 28 C -0.18 -3.39 8.37 71.98 0.60 -2.78 16 29 C 0.18 3.29 8.85 86.24 0.76 4.05 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 2.56 7.67 -2.39 -0.02 2.54 16 32 H 0.04 1.62 3.27 -2.39 -0.01 1.62 16 33 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.90 6.64 -2.38 -0.02 1.89 16 36 H 0.06 1.96 7.02 -2.39 -0.02 1.94 16 37 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.15 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.09 2.52 8.01 -2.39 -0.02 2.50 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 43 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.06 1.56 5.88 -2.39 -0.01 1.54 16 48 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 51 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -76.37 400.17 4.26 -72.11 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.84 Total: 19.57 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 7.59 Total: 17.32 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -5.51 Total: -100.80 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -0.34 Total: -54.47 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.67 Total: 46.27 kcal Total: -76.37 4.26 -72.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492795924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.287 kcal (2) G-P(sol) polarization free energy of solvation -76.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds