Wall clock time and date at job start Tue Mar 31 2020 21:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46951 * 2 1 4 4 C 1.50700 * 109.47344 * 239.99819 * 2 1 3 5 5 H 1.07995 * 120.00308 * 240.00422 * 4 2 1 6 6 C 1.37884 * 119.99889 * 59.99517 * 4 2 1 7 7 N 1.31512 * 119.99830 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99893 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47178 * 60.00512 * 8 6 4 10 10 H 1.48506 * 109.46808 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47088 * 300.00157 * 8 6 4 12 12 N 1.46497 * 109.47180 * 120.00045 * 2 1 3 13 13 C 1.46500 * 120.00341 * 59.99854 * 12 2 1 14 14 C 1.34775 * 119.99874 * 240.00270 * 12 2 1 15 15 O 1.21284 * 120.00033 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00228 * 179.97438 * 14 12 2 17 17 H 1.09001 * 115.59506 * 325.82701 * 16 14 12 18 18 C 1.53208 * 117.52363 * 111.64290 * 16 14 12 19 19 C 1.52092 * 117.52627 * 179.97438 * 16 14 12 20 20 C 1.52613 * 129.80889 * 133.51316 * 19 16 14 21 21 N 1.47248 * 87.69737 * 195.57579 * 20 19 16 22 22 C 1.34777 * 135.89716 * 206.23700 * 21 20 19 23 23 O 1.21513 * 120.00316 * 359.97438 * 22 21 20 24 24 O 1.34638 * 119.99672 * 179.72071 * 22 21 20 25 25 C 1.45202 * 116.99776 * 180.27362 * 24 22 21 26 26 C 1.53000 * 109.46964 * 60.00058 * 25 24 22 27 27 C 1.53008 * 109.46858 * 179.97438 * 25 24 22 28 28 C 1.52994 * 109.47273 * 299.99862 * 25 24 22 29 29 C 1.47244 * 88.19732 * 26.48478 * 21 20 19 30 30 H 1.09004 * 109.46951 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46850 * 300.00197 * 1 2 3 32 32 H 1.08999 * 109.47328 * 60.00257 * 1 2 3 33 33 H 0.97001 * 119.99805 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.46906 * 270.00501 * 13 12 2 35 35 H 1.09002 * 109.46622 * 30.00203 * 13 12 2 36 36 H 1.08992 * 109.47188 * 150.00242 * 13 12 2 37 37 H 1.08998 * 117.52366 * 0.02562 * 18 16 14 38 38 H 1.09006 * 117.57153 * 214.82266 * 18 16 14 39 39 H 1.09000 * 113.51809 * 80.86185 * 20 19 16 40 40 H 1.09007 * 113.51257 * 310.28245 * 20 19 16 41 41 H 1.08997 * 109.47363 * 60.00315 * 26 25 24 42 42 H 1.09005 * 109.46795 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.46811 * 299.99419 * 26 25 24 44 44 H 1.08996 * 109.46984 * 60.00080 * 27 25 24 45 45 H 1.08996 * 109.46584 * 179.97438 * 27 25 24 46 46 H 1.08998 * 109.47272 * 300.00133 * 27 25 24 47 47 H 1.08995 * 109.47307 * 59.99582 * 28 25 24 48 48 H 1.08999 * 109.47211 * 180.02562 * 28 25 24 49 49 H 1.09010 * 109.46887 * 300.00170 * 28 25 24 50 50 H 1.09007 * 113.51109 * 88.22202 * 29 21 20 51 51 H 1.09002 * 113.51767 * 218.80629 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8269 -0.4200 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.0865 1.1255 1.8911 16 6 3.2951 -0.7457 3.3140 17 1 2.6176 -1.4858 3.7399 18 6 4.7984 -1.0268 3.4057 19 6 4.1657 0.0468 4.2770 20 6 4.0933 0.1538 5.7976 21 7 4.9640 1.3369 5.6964 22 6 5.8506 1.9577 6.4996 23 8 6.0701 1.5229 7.6129 24 8 6.4968 3.0566 6.0666 25 6 7.4419 3.6694 6.9828 26 6 8.5370 2.6609 7.3360 27 6 8.0731 4.8955 6.3198 28 6 6.7122 4.0973 8.2576 29 6 4.4387 1.5496 4.3374 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 0.7094 1.1616 -3.4844 34 1 0.7376 -2.1443 1.9993 35 1 1.5296 -2.5968 0.4708 36 1 2.4629 -2.5818 1.9864 37 1 5.4239 -0.6975 2.5760 38 1 5.1101 -1.9512 3.8920 39 1 4.5580 -0.6853 6.3153 40 1 3.0942 0.3796 6.1706 41 1 9.0569 2.3561 6.4278 42 1 9.2462 3.1209 8.0242 43 1 8.0876 1.7872 7.8082 44 1 7.2932 5.6140 6.0678 45 1 8.7822 5.3558 7.0078 46 1 8.5930 4.5903 5.4118 47 1 6.2629 3.2237 8.7297 48 1 7.4216 4.5578 8.9452 49 1 5.9320 4.8158 8.0059 50 1 3.5342 2.1574 4.3109 51 1 5.1942 1.8847 3.6266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492795925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:46 Heat of formation + Delta-G solvation = -40.071743 kcal Electronic energy + Delta-G solvation = -30130.018928 eV Core-core repulsion = 26032.630507 eV Total energy + Delta-G solvation = -4097.388421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.07608 -40.11798 -38.62675 -36.76131 -35.41876 -34.60299 -34.00482 -32.79631 -29.55243 -28.15032 -27.60509 -27.57729 -26.20911 -26.11973 -25.26307 -24.06387 -22.22063 -20.87322 -19.74316 -18.92491 -18.11884 -17.76101 -16.93675 -16.67123 -16.47148 -16.18841 -15.51659 -15.20239 -14.98844 -14.72663 -14.34054 -14.22927 -14.21508 -13.81649 -13.36089 -13.20021 -12.68633 -12.61325 -12.42748 -12.40956 -12.34963 -12.08970 -12.07849 -11.98216 -11.70624 -11.64778 -11.51925 -11.45396 -11.08328 -10.90041 -10.79891 -10.76449 -10.58742 -10.51128 -10.32689 -10.28564 -10.18397 -9.90317 -9.22460 -8.99356 -8.84424 -8.44808 -7.62252 -6.09784 -4.17939 1.85542 2.75803 3.03440 3.25909 3.31474 3.32679 3.62060 3.68301 3.92222 4.24786 4.39020 4.51184 4.52498 4.56583 4.69910 4.83613 5.07164 5.15677 5.21022 5.24307 5.25816 5.30374 5.32252 5.43197 5.48042 5.51926 5.55480 5.63352 5.64655 5.72504 5.76402 5.79269 5.84222 5.89435 5.98898 6.01440 6.07901 6.12100 6.36023 6.39559 6.73045 6.81135 7.03807 7.39049 7.50620 7.62888 7.69020 7.98789 8.17250 8.25312 8.49874 8.79931 9.01530 9.48599 10.95457 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.002285 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.353050 B =12252.111229 C =12838.554990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.588 5.588 13 C 0.083 3.917 14 C 0.531 3.469 15 O -0.549 6.549 16 C -0.151 4.151 17 H 0.126 0.874 18 C -0.110 4.110 19 C -0.159 4.159 20 C 0.173 3.827 21 N -0.636 5.636 22 C 0.684 3.316 23 O -0.574 6.574 24 O -0.359 6.359 25 C 0.135 3.865 26 C -0.183 4.183 27 C -0.141 4.141 28 C -0.183 4.183 29 C 0.161 3.839 30 H 0.029 0.971 31 H 0.011 0.989 32 H 0.093 0.907 33 H 0.264 0.736 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.098 0.902 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.916 -0.128 18.335 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.318 5.318 13 C -0.061 4.061 14 C 0.317 3.683 15 O -0.428 6.428 16 C -0.173 4.173 17 H 0.144 0.856 18 C -0.147 4.147 19 C -0.160 4.160 20 C 0.052 3.948 21 N -0.378 5.378 22 C 0.441 3.559 23 O -0.465 6.465 24 O -0.273 6.273 25 C 0.098 3.902 26 C -0.240 4.240 27 C -0.198 4.198 28 C -0.240 4.240 29 C 0.039 3.961 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.105 0.895 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.116 0.884 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.251 0.665 18.562 20.750 hybrid contribution 0.154 -0.574 -0.865 1.049 sum 9.405 0.091 17.697 20.041 Atomic orbital electron populations 1.22083 0.98194 0.99404 1.00792 1.18944 0.90854 0.94509 0.79834 0.91872 1.21272 1.31925 1.13050 0.90286 0.92285 1.24892 0.94928 0.94976 0.98963 1.69867 1.36243 1.22533 1.23895 0.86558 0.79236 0.79575 0.82025 1.20232 1.21180 1.20255 1.48159 1.48643 1.11670 1.23320 1.21611 0.98774 0.83273 1.02401 1.19372 0.79222 0.86554 0.83124 1.90644 1.58522 1.16913 1.76727 1.22265 0.95378 1.02490 0.97171 0.85621 1.22755 0.93248 0.98128 1.00576 1.21938 1.05791 0.95292 0.93001 1.22324 0.93495 0.86072 0.92926 1.48117 1.40712 1.30724 1.18228 1.17159 0.78275 0.78808 0.81657 1.90878 1.68345 1.67919 1.19330 1.86351 1.53956 1.39934 1.47078 1.22080 0.87073 0.92553 0.88490 1.22516 0.98126 1.00917 1.02441 1.21859 1.00897 0.95514 1.01539 1.22512 1.01176 1.03370 0.96936 1.22399 0.99072 0.93656 0.81002 0.95167 0.97022 0.88862 0.92606 0.93938 0.90120 0.92570 0.87487 0.87401 0.89820 0.88812 0.92123 0.91223 0.89440 0.91388 0.90185 0.91362 0.89453 0.91196 0.92158 0.88413 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.97 37.16 0.33 -3.07 16 2 C 0.26 6.37 2.64 -69.08 -0.18 6.19 16 3 H 0.06 1.81 6.90 -51.93 -0.36 1.46 16 4 C -0.53 -13.79 7.99 -34.44 -0.28 -14.07 16 5 H 0.06 1.51 7.33 -52.49 -0.38 1.13 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.65 11.32 55.43 0.63 -24.03 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.59 -11.79 2.75 -175.26 -0.48 -12.28 16 13 C 0.08 1.30 9.00 59.85 0.54 1.84 16 14 C 0.53 10.07 7.46 -10.99 -0.08 9.98 16 15 O -0.55 -12.35 14.64 5.55 0.08 -12.27 16 16 C -0.15 -2.00 4.81 -92.13 -0.44 -2.44 16 17 H 0.13 1.33 7.26 -51.93 -0.38 0.95 16 18 C -0.11 -1.28 10.23 -27.11 -0.28 -1.56 16 19 C -0.16 -1.96 3.15 -155.73 -0.49 -2.45 16 20 C 0.17 1.90 8.62 -7.65 -0.07 1.83 16 21 N -0.64 -8.65 3.69 -190.24 -0.70 -9.35 16 22 C 0.68 10.10 8.26 54.06 0.45 10.55 16 23 O -0.57 -9.12 12.65 -19.28 -0.24 -9.37 16 24 O -0.36 -4.98 9.91 -40.32 -0.40 -5.38 16 25 C 0.13 1.46 1.13 -90.62 -0.10 1.36 16 26 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 27 C -0.14 -1.18 8.85 37.16 0.33 -0.85 16 28 C -0.18 -1.86 8.37 37.15 0.31 -1.54 16 29 C 0.16 2.24 7.17 -7.52 -0.05 2.18 16 30 H 0.03 0.64 7.67 -51.93 -0.40 0.25 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.36 7.02 -51.93 -0.36 1.00 16 36 H 0.06 0.70 6.64 -51.93 -0.34 0.35 16 37 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.08 5.88 -51.93 -0.31 0.78 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 50 H 0.10 1.41 8.12 -51.93 -0.42 0.99 16 51 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 407.22 15.07 6.14 6.14 Total: -1.00 -31.76 407.22 -8.43 -40.19 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.63 Total: 2.70 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 0.20 Total: 8.05 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.56 Total: -45.65 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.56 Total: -27.02 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.76 -8.43 -40.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492795925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.119 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds