Wall clock time and date at job start Tue Mar 31 2020 21:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46951 * 2 1 4 4 C 1.50700 * 109.47344 * 239.99819 * 2 1 3 5 5 H 1.07995 * 120.00308 * 240.00422 * 4 2 1 6 6 C 1.37884 * 119.99889 * 59.99517 * 4 2 1 7 7 N 1.31512 * 119.99830 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99893 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47178 * 60.00512 * 8 6 4 10 10 H 1.48506 * 109.46808 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47088 * 300.00157 * 8 6 4 12 12 N 1.46497 * 109.47180 * 120.00045 * 2 1 3 13 13 C 1.46500 * 120.00341 * 59.99854 * 12 2 1 14 14 C 1.34775 * 119.99874 * 240.00270 * 12 2 1 15 15 O 1.21284 * 120.00033 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00228 * 179.97438 * 14 12 2 17 17 H 1.09001 * 115.59506 * 325.82701 * 16 14 12 18 18 C 1.53208 * 117.52363 * 111.64290 * 16 14 12 19 19 C 1.52092 * 117.52627 * 179.97438 * 16 14 12 20 20 C 1.52613 * 129.80889 * 133.51316 * 19 16 14 21 21 N 1.47248 * 87.69737 * 195.57579 * 20 19 16 22 22 C 1.34777 * 135.89716 * 206.23700 * 21 20 19 23 23 O 1.21513 * 120.00316 * 359.97438 * 22 21 20 24 24 O 1.34638 * 119.99672 * 179.72071 * 22 21 20 25 25 C 1.45202 * 116.99776 * 180.27362 * 24 22 21 26 26 C 1.53000 * 109.46964 * 60.00058 * 25 24 22 27 27 C 1.53008 * 109.46858 * 179.97438 * 25 24 22 28 28 C 1.52994 * 109.47273 * 299.99862 * 25 24 22 29 29 C 1.47244 * 88.19732 * 26.48478 * 21 20 19 30 30 H 1.09004 * 109.46951 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46850 * 300.00197 * 1 2 3 32 32 H 1.08999 * 109.47328 * 60.00257 * 1 2 3 33 33 H 0.97001 * 119.99805 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.46906 * 270.00501 * 13 12 2 35 35 H 1.09002 * 109.46622 * 30.00203 * 13 12 2 36 36 H 1.08992 * 109.47188 * 150.00242 * 13 12 2 37 37 H 1.08998 * 117.52366 * 0.02562 * 18 16 14 38 38 H 1.09006 * 117.57153 * 214.82266 * 18 16 14 39 39 H 1.09000 * 113.51809 * 80.86185 * 20 19 16 40 40 H 1.09007 * 113.51257 * 310.28245 * 20 19 16 41 41 H 1.08997 * 109.47363 * 60.00315 * 26 25 24 42 42 H 1.09005 * 109.46795 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.46811 * 299.99419 * 26 25 24 44 44 H 1.08996 * 109.46984 * 60.00080 * 27 25 24 45 45 H 1.08996 * 109.46584 * 179.97438 * 27 25 24 46 46 H 1.08998 * 109.47272 * 300.00133 * 27 25 24 47 47 H 1.08995 * 109.47307 * 59.99582 * 28 25 24 48 48 H 1.08999 * 109.47211 * 180.02562 * 28 25 24 49 49 H 1.09010 * 109.46887 * 300.00170 * 28 25 24 50 50 H 1.09007 * 113.51109 * 88.22202 * 29 21 20 51 51 H 1.09002 * 113.51767 * 218.80629 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8269 -0.4200 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.0865 1.1255 1.8911 16 6 3.2951 -0.7457 3.3140 17 1 2.6176 -1.4858 3.7399 18 6 4.7984 -1.0268 3.4057 19 6 4.1657 0.0468 4.2770 20 6 4.0933 0.1538 5.7976 21 7 4.9640 1.3369 5.6964 22 6 5.8506 1.9577 6.4996 23 8 6.0701 1.5229 7.6129 24 8 6.4968 3.0566 6.0666 25 6 7.4419 3.6694 6.9828 26 6 8.5370 2.6609 7.3360 27 6 8.0731 4.8955 6.3198 28 6 6.7122 4.0973 8.2576 29 6 4.4387 1.5496 4.3374 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 0.7094 1.1616 -3.4844 34 1 0.7376 -2.1443 1.9993 35 1 1.5296 -2.5968 0.4708 36 1 2.4629 -2.5818 1.9864 37 1 5.4239 -0.6975 2.5760 38 1 5.1101 -1.9512 3.8920 39 1 4.5580 -0.6853 6.3153 40 1 3.0942 0.3796 6.1706 41 1 9.0569 2.3561 6.4278 42 1 9.2462 3.1209 8.0242 43 1 8.0876 1.7872 7.8082 44 1 7.2932 5.6140 6.0678 45 1 8.7822 5.3558 7.0078 46 1 8.5930 4.5903 5.4118 47 1 6.2629 3.2237 8.7297 48 1 7.4216 4.5578 8.9452 49 1 5.9320 4.8158 8.0059 50 1 3.5342 2.1574 4.3109 51 1 5.1942 1.8847 3.6266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492795925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:45 Heat of formation + Delta-G solvation = -59.059784 kcal Electronic energy + Delta-G solvation = -30130.842311 eV Core-core repulsion = 26032.630507 eV Total energy + Delta-G solvation = -4098.211805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.12981 -41.24981 -39.97629 -37.83082 -37.05247 -35.75251 -34.95680 -34.63805 -31.37803 -29.20124 -28.37861 -28.32950 -27.48870 -27.28185 -27.20392 -25.40682 -23.19464 -22.39526 -20.84321 -20.10079 -19.35464 -18.80848 -18.52263 -17.97172 -17.69633 -17.49858 -17.04546 -16.34189 -16.13006 -16.07184 -15.74579 -15.41133 -15.15456 -14.83224 -14.74130 -14.35293 -14.16154 -13.80019 -13.64836 -13.48053 -13.37114 -13.17336 -13.02945 -13.00474 -12.90634 -12.89604 -12.80845 -12.72499 -12.60594 -12.53658 -12.37580 -12.16666 -12.10726 -11.85794 -11.57571 -11.42749 -11.31591 -11.16272 -10.94147 -10.59940 -10.41012 -9.90957 -9.25296 -8.12365 -6.28494 0.89449 1.42818 1.44905 1.52054 1.63196 1.73866 2.28082 2.48144 2.62465 2.87555 3.15687 3.16350 3.47345 3.72599 3.77063 3.79503 3.92224 3.97618 4.15101 4.23700 4.44198 4.51913 4.55428 4.58298 4.59984 4.60493 4.70564 4.74003 4.78766 4.80286 4.82660 4.83229 4.84060 4.84825 4.91348 4.93552 5.04193 5.08987 5.11931 5.14181 5.26022 5.30078 5.44483 5.51313 5.65403 5.71120 6.07999 6.20065 6.55675 6.80044 6.91488 7.17827 7.36023 7.54659 8.91564 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.002285 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.353050 B =12252.111229 C =12838.554990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.009 0.991 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.262 1.262 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.598 5.598 13 C 0.079 3.921 14 C 0.519 3.481 15 O -0.598 6.598 16 C -0.146 4.146 17 H 0.167 0.833 18 C -0.095 4.095 19 C -0.156 4.156 20 C 0.180 3.820 21 N -0.640 5.640 22 C 0.678 3.322 23 O -0.588 6.588 24 O -0.375 6.375 25 C 0.120 3.880 26 C -0.177 4.177 27 C -0.137 4.137 28 C -0.177 4.177 29 C 0.156 3.844 30 H 0.046 0.954 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.263 0.737 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.096 0.904 49 H 0.057 0.943 50 H 0.086 0.914 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.806 -2.404 19.928 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.160 3.840 3 H 0.026 0.974 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.186 1.186 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.327 5.327 13 C -0.063 4.063 14 C 0.308 3.692 15 O -0.480 6.480 16 C -0.167 4.167 17 H 0.184 0.816 18 C -0.132 4.132 19 C -0.158 4.158 20 C 0.060 3.940 21 N -0.382 5.382 22 C 0.435 3.565 23 O -0.480 6.480 24 O -0.290 6.290 25 C 0.084 3.916 26 C -0.234 4.234 27 C -0.194 4.194 28 C -0.234 4.234 29 C 0.034 3.966 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.168 0.832 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.127 0.873 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.115 0.885 49 H 0.076 0.924 50 H 0.104 0.896 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.134 -1.656 20.177 22.640 hybrid contribution -0.088 0.231 -1.346 1.369 sum 10.046 -1.425 18.831 21.391 Atomic orbital electron populations 1.21863 0.97316 1.00043 0.99811 1.18492 0.91469 0.92217 0.81790 0.97352 1.21563 1.31719 1.13026 0.91112 0.91958 1.25730 0.95153 0.95658 1.02025 1.70020 1.37416 1.23931 1.24381 0.85547 0.78396 0.79047 0.78253 1.18627 1.21182 1.20296 1.48150 1.48915 1.13476 1.22190 1.21867 1.01422 0.80457 1.02549 1.20368 0.78181 0.86266 0.84367 1.90625 1.59954 1.19363 1.78063 1.22175 0.96931 1.03044 0.94550 0.81615 1.22919 0.91384 0.99273 0.99646 1.21938 1.05794 0.93995 0.94063 1.22483 0.94090 0.85690 0.91697 1.48282 1.40734 1.31369 1.17813 1.17340 0.78493 0.79025 0.81650 1.90866 1.68920 1.68411 1.19810 1.86362 1.54510 1.39780 1.48334 1.22509 0.86919 0.93440 0.88749 1.22458 0.98191 1.00052 1.02693 1.21898 1.01158 0.94351 1.01982 1.22457 1.01647 1.02361 0.96950 1.22302 0.97966 0.95289 0.81086 0.93493 0.96146 0.91662 0.92748 0.91610 0.91677 0.88628 0.89500 0.83224 0.87751 0.87111 0.92340 0.88591 0.91751 0.91681 0.87326 0.91674 0.91792 0.88548 0.92370 0.89595 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.23 8.97 71.98 0.65 -5.59 16 2 C 0.26 13.30 2.64 44.25 0.12 13.42 16 3 H 0.01 0.52 6.90 -2.39 -0.02 0.50 16 4 C -0.54 -28.44 7.99 25.60 0.20 -28.24 16 5 H 0.06 3.18 7.33 -2.91 -0.02 3.16 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 8 Si 0.96 42.46 29.54 68.60 2.03 44.48 16 9 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 N -0.60 -23.71 2.75 -826.80 -2.28 -25.99 16 13 C 0.08 2.24 9.00 127.77 1.15 3.39 16 14 C 0.52 19.62 7.46 87.66 0.65 20.27 16 15 O -0.60 -28.21 14.64 -3.04 -0.04 -28.25 16 16 C -0.15 -3.45 4.81 -11.77 -0.06 -3.51 16 17 H 0.17 2.64 7.26 -2.39 -0.02 2.62 16 18 C -0.10 -1.94 10.23 30.35 0.31 -1.63 16 19 C -0.16 -3.58 3.15 -52.97 -0.17 -3.75 16 20 C 0.18 3.52 8.62 83.64 0.72 4.24 16 21 N -0.64 -17.15 3.69 -986.19 -3.64 -20.79 16 22 C 0.68 20.08 8.26 129.79 1.07 21.15 16 23 O -0.59 -18.58 12.65 19.80 0.25 -18.33 16 24 O -0.37 -10.61 9.91 -55.47 -0.55 -11.16 16 25 C 0.12 2.53 1.13 -10.79 -0.01 2.52 16 26 C -0.18 -3.44 8.37 71.98 0.60 -2.84 16 27 C -0.14 -2.11 8.85 71.98 0.64 -1.48 16 28 C -0.18 -3.45 8.37 71.98 0.60 -2.85 16 29 C 0.16 4.46 7.17 83.72 0.60 5.06 16 30 H 0.05 2.00 7.67 -2.39 -0.02 1.98 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 33 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 2.06 7.02 -2.39 -0.02 2.05 16 36 H 0.10 1.94 6.64 -2.39 -0.02 1.92 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.15 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 42 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.06 1.58 5.88 -2.39 -0.01 1.56 16 44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.06 1.57 5.88 -2.39 -0.01 1.56 16 48 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 50 H 0.09 2.62 8.12 -2.38 -0.02 2.60 16 51 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -74.15 407.22 4.45 -69.69 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.91 Total: 21.37 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 7.53 Total: 21.36 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -5.67 Total: -99.16 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -0.34 Total: -57.74 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -74.15 4.45 -69.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492795925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.634 kcal (2) G-P(sol) polarization free energy of solvation -74.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds