Wall clock time and date at job start Tue Mar 31 2020 21:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46903 * 2 1 4 4 C 1.50699 * 109.46993 * 239.99846 * 2 1 3 5 5 H 1.07999 * 119.99856 * 265.10720 * 4 2 1 6 6 C 1.37870 * 120.00161 * 85.10751 * 4 2 1 7 7 N 1.31516 * 120.00213 * 185.01638 * 6 4 2 8 8 Si 1.86802 * 120.00268 * 5.01768 * 6 4 2 9 9 H 1.48497 * 109.47179 * 94.90989 * 8 6 4 10 10 H 1.48496 * 109.47232 * 214.91226 * 8 6 4 11 11 H 1.48501 * 109.46807 * 334.90794 * 8 6 4 12 12 N 1.46493 * 109.46965 * 119.99381 * 2 1 3 13 13 C 1.46501 * 119.99828 * 60.00271 * 12 2 1 14 14 C 1.34778 * 120.00411 * 239.99853 * 12 2 1 15 15 O 1.21620 * 119.99583 * 9.86525 * 14 12 2 16 16 C 1.47096 * 120.00268 * 189.86288 * 14 12 2 17 17 C 1.31566 * 117.84143 * 189.94042 * 16 14 12 18 18 C 1.50344 * 123.37407 * 180.82873 * 17 16 14 19 19 N 1.46992 * 109.15408 * 348.92486 * 18 17 16 20 20 C 1.34776 * 121.32580 * 223.34877 * 19 18 17 21 21 O 1.21509 * 120.00196 * 179.97438 * 20 19 18 22 22 O 1.34640 * 119.99783 * 359.97438 * 20 19 18 23 23 C 1.45202 * 116.99709 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47148 * 59.99759 * 23 22 20 25 25 C 1.53005 * 109.47057 * 179.97438 * 23 22 20 26 26 C 1.52996 * 109.47277 * 299.99611 * 23 22 20 27 27 C 1.47297 * 117.34745 * 43.32329 * 19 18 17 28 28 C 1.49995 * 117.84109 * 9.68013 * 16 14 12 29 29 H 1.08999 * 109.47018 * 64.88065 * 1 2 3 30 30 H 1.08990 * 109.47025 * 184.88559 * 1 2 3 31 31 H 1.09000 * 109.46814 * 304.88488 * 1 2 3 32 32 H 0.97003 * 120.00527 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47442 * 96.87996 * 13 12 2 34 34 H 1.08994 * 109.47504 * 336.88019 * 13 12 2 35 35 H 1.09007 * 109.46915 * 216.87957 * 13 12 2 36 36 H 1.08007 * 118.30760 * 0.81391 * 17 16 14 37 37 H 1.08999 * 109.52450 * 108.82601 * 18 17 16 38 38 H 1.08999 * 109.52685 * 229.01584 * 18 17 16 39 39 H 1.09003 * 109.47180 * 60.00353 * 24 23 22 40 40 H 1.09003 * 109.47095 * 179.97438 * 24 23 22 41 41 H 1.08993 * 109.47269 * 299.99710 * 24 23 22 42 42 H 1.09001 * 109.46898 * 60.00093 * 25 23 22 43 43 H 1.08993 * 109.46970 * 179.97438 * 25 23 22 44 44 H 1.08997 * 109.47263 * 300.00472 * 25 23 22 45 45 H 1.09007 * 109.46913 * 59.99789 * 26 23 22 46 46 H 1.08993 * 109.47721 * 180.02562 * 26 23 22 47 47 H 1.09001 * 109.47214 * 300.00235 * 26 23 22 48 48 H 1.08997 * 109.76155 * 57.22563 * 27 19 18 49 49 H 1.09001 * 109.76004 * 177.93694 * 27 19 18 50 50 H 1.08995 * 109.31300 * 281.30172 * 28 16 14 51 51 H 1.09001 * 109.31159 * 40.72563 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.2876 -1.7587 -1.1823 6 6 2.1661 -0.0222 -2.4175 7 7 2.5095 -0.6624 -3.5138 8 14 1.8597 1.8198 -2.4690 9 1 3.1488 2.5406 -2.3138 10 1 1.2431 2.1829 -3.7701 11 1 0.9437 2.2002 -1.3638 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0930 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 2.9406 1.1682 1.9898 16 6 3.4607 -0.7763 3.1648 17 6 4.0402 -0.0807 4.1193 18 6 4.7722 -0.7089 5.2726 19 7 4.4987 -2.1530 5.2882 20 6 4.2272 -2.8024 6.4376 21 8 4.0042 -3.9967 6.4226 22 8 4.2029 -2.1276 7.6024 23 6 3.9040 -2.8914 8.8006 24 6 4.9558 -3.9876 8.9822 25 6 3.9218 -1.9618 10.0157 26 6 2.5201 -3.5298 8.6665 27 6 4.5328 -2.8622 3.9976 28 6 3.4304 -2.2749 3.1097 29 1 -0.3633 0.4362 -0.9305 30 1 -0.3633 -1.0238 0.0875 31 1 -0.3633 0.5878 0.8430 32 1 2.6033 -0.1783 -4.3491 33 1 2.4743 -2.7345 1.0804 34 1 0.7517 -2.3325 0.8827 35 1 1.5041 -2.2558 2.4940 36 1 3.9877 0.9971 4.0718 37 1 5.8433 -0.5422 5.1585 38 1 4.4308 -0.2633 6.2069 39 1 5.9418 -3.5328 9.0778 40 1 4.7317 -4.5607 9.8819 41 1 4.9435 -4.6499 8.1167 42 1 3.1727 -1.1807 9.8865 43 1 3.6970 -2.5351 10.9150 44 1 4.9079 -1.5073 10.1111 45 1 2.5078 -4.1921 7.8008 46 1 2.2955 -4.1028 9.5660 47 1 1.7707 -2.7488 8.5371 48 1 5.5051 -2.7217 3.5255 49 1 4.3504 -3.9250 4.1562 50 1 2.4586 -2.6287 3.4536 51 1 3.5864 -2.6010 2.0814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495822647.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:27 Heat of formation + Delta-G solvation = -66.175319 kcal Electronic energy + Delta-G solvation = -30865.619044 eV Core-core repulsion = 26767.098687 eV Total energy + Delta-G solvation = -4098.520357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.10758 -39.91849 -38.24111 -36.56426 -35.67458 -34.46540 -33.40300 -32.37771 -31.33576 -30.02140 -27.70431 -27.64428 -26.91383 -26.27230 -25.21628 -23.83910 -22.56414 -21.37805 -20.03405 -19.02171 -18.65661 -17.62202 -16.91657 -16.78072 -16.32720 -15.92084 -15.68227 -15.58200 -15.12086 -14.79464 -14.50292 -14.29780 -13.83028 -13.74728 -13.69233 -13.34341 -12.96008 -12.83044 -12.80085 -12.61554 -12.51815 -12.43356 -12.24134 -12.17750 -12.12599 -11.72716 -11.67599 -11.56441 -11.32739 -11.25631 -11.10903 -10.78914 -10.61298 -10.48666 -10.46337 -10.19400 -9.78680 -9.38717 -9.24717 -9.02462 -8.81494 -8.62033 -7.66848 -6.18541 -4.19917 1.60846 1.91309 2.66307 3.27061 3.36204 3.42498 3.56735 3.70638 3.80483 4.35963 4.42810 4.47424 4.61564 4.63937 4.74043 4.86925 4.98315 5.14804 5.17116 5.18484 5.21909 5.24884 5.28053 5.39489 5.47114 5.52726 5.55877 5.57734 5.60886 5.69506 5.70605 5.90056 5.98768 6.01402 6.03711 6.13681 6.20608 6.27102 6.33064 6.37749 6.42176 6.55195 6.66282 6.92132 7.08881 7.19598 7.42153 7.60819 8.12124 8.14876 8.45922 8.80925 8.86831 9.43868 10.93553 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.025229 B = 0.002510 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.586623 B =11153.900535 C =11355.213432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.226 3.774 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.870 3.130 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.258 1.258 12 N -0.582 5.582 13 C 0.067 3.933 14 C 0.539 3.461 15 O -0.558 6.558 16 C -0.143 4.143 17 C -0.116 4.116 18 C 0.144 3.856 19 N -0.598 5.598 20 C 0.658 3.342 21 O -0.569 6.569 22 O -0.363 6.363 23 C 0.136 3.864 24 C -0.183 4.183 25 C -0.141 4.141 26 C -0.184 4.184 27 C 0.125 3.875 28 C -0.119 4.119 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.026 0.974 32 H 0.266 0.734 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.102 0.898 50 H 0.095 0.905 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 -5.481 25.005 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.125 3.875 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.696 3.304 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.182 1.182 12 N -0.311 5.311 13 C -0.076 4.076 14 C 0.327 3.673 15 O -0.439 6.439 16 C -0.147 4.147 17 C -0.137 4.137 18 C 0.022 3.978 19 N -0.338 5.338 20 C 0.413 3.587 21 O -0.458 6.458 22 O -0.278 6.278 23 C 0.099 3.901 24 C -0.240 4.240 25 C -0.198 4.198 26 C -0.241 4.241 27 C 0.004 3.996 28 C -0.156 4.156 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.120 0.880 50 H 0.113 0.887 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.388 -5.236 24.795 25.567 hybrid contribution -0.137 0.917 -0.334 0.986 sum 3.251 -4.318 24.461 25.051 Atomic orbital electron populations 1.22294 0.98534 1.00233 0.99748 1.19345 0.90791 0.94873 0.82534 0.91954 1.21120 1.45040 0.98435 0.91891 0.90386 1.24893 0.93998 0.98218 0.95370 1.69890 1.47182 1.36210 0.99640 0.86967 0.79519 0.86173 0.77717 1.20045 1.21149 1.18218 1.47990 1.48667 1.11781 1.22691 1.22445 1.01364 0.83114 1.00629 1.18472 0.79512 0.87043 0.82263 1.90716 1.64034 1.14304 1.74814 1.20807 1.01784 0.95650 0.96442 1.23012 0.95694 1.01367 0.93606 1.20620 0.99843 0.78823 0.98480 1.47082 1.72433 1.09421 1.04896 1.17858 0.76357 0.83596 0.80893 1.90884 1.55057 1.13678 1.86228 1.86296 1.84096 1.42496 1.14912 1.22065 0.95649 0.91257 0.81139 1.22511 0.98102 0.99109 1.04269 1.21860 1.03374 0.99622 0.94935 1.22515 0.95055 1.02030 1.04480 1.21917 0.99546 0.97850 0.80240 1.21804 0.99687 0.91944 1.02165 0.92428 0.93242 0.95505 0.92422 0.92128 0.90943 0.91322 0.84503 0.89527 0.87842 0.92236 0.91217 0.89341 0.91427 0.90190 0.91480 0.89304 0.91218 0.92139 0.90218 0.87959 0.88695 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.83 37.16 0.33 -2.85 16 2 C 0.23 5.39 2.14 -69.08 -0.15 5.25 16 3 H 0.06 1.65 4.52 -51.93 -0.23 1.41 16 4 C -0.53 -14.25 8.84 -34.44 -0.30 -14.55 16 5 H 0.08 2.23 7.63 -52.49 -0.40 1.83 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 8 Si 0.87 21.68 26.35 -169.99 -4.48 17.20 16 9 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.26 -6.22 5.97 56.52 0.34 -5.89 16 12 N -0.58 -11.87 2.75 -176.66 -0.49 -12.36 16 13 C 0.07 1.07 7.69 59.85 0.46 1.53 16 14 C 0.54 10.83 7.51 -12.67 -0.10 10.74 16 15 O -0.56 -13.17 15.36 5.26 0.08 -13.09 16 16 C -0.14 -2.17 5.66 -103.22 -0.58 -2.75 16 17 C -0.12 -1.53 9.50 -36.33 -0.35 -1.87 16 18 C 0.14 1.47 6.61 -5.10 -0.03 1.44 16 19 N -0.60 -6.81 2.96 -179.87 -0.53 -7.34 16 20 C 0.66 8.12 7.76 54.05 0.42 8.54 16 21 O -0.57 -7.91 11.36 -19.28 -0.22 -8.13 16 22 O -0.36 -4.00 8.67 -40.33 -0.35 -4.35 16 23 C 0.14 1.21 1.13 -90.62 -0.10 1.11 16 24 C -0.18 -1.56 8.37 37.16 0.31 -1.25 16 25 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 26 C -0.18 -1.65 8.37 37.16 0.31 -1.34 16 27 C 0.13 1.36 6.49 -3.48 -0.02 1.34 16 28 C -0.12 -1.46 4.02 -28.09 -0.11 -1.57 16 29 H 0.06 1.25 6.90 -51.93 -0.36 0.89 16 30 H 0.05 0.96 6.51 -51.93 -0.34 0.62 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.06 0.91 6.06 -51.93 -0.31 0.60 16 34 H 0.07 1.17 6.37 -51.93 -0.33 0.84 16 35 H 0.07 0.90 4.79 -51.93 -0.25 0.65 16 36 H 0.14 1.91 7.21 -52.48 -0.38 1.53 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.95 7.14 -51.93 -0.37 0.58 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.96 5.88 -51.93 -0.31 0.65 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 1.01 5.88 -51.92 -0.31 0.70 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.10 1.10 7.06 -51.93 -0.37 0.73 16 50 H 0.10 1.11 5.81 -51.93 -0.30 0.81 16 51 H 0.11 1.40 5.31 -51.93 -0.28 1.13 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -33.57 385.67 -7.04 -40.62 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.96 Total: 2.08 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 0.31 Total: 5.31 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.24 Total: -45.44 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.49 Total: -25.57 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.48 Total: 17.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.57 -7.04 -40.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495822647.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.558 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds