Wall clock time and date at job start Tue Mar 31 2020 21:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46903 * 2 1 4 4 C 1.50699 * 109.46993 * 239.99846 * 2 1 3 5 5 H 1.07999 * 119.99856 * 265.10720 * 4 2 1 6 6 C 1.37870 * 120.00161 * 85.10751 * 4 2 1 7 7 N 1.31516 * 120.00213 * 185.01638 * 6 4 2 8 8 Si 1.86802 * 120.00268 * 5.01768 * 6 4 2 9 9 H 1.48497 * 109.47179 * 94.90989 * 8 6 4 10 10 H 1.48496 * 109.47232 * 214.91226 * 8 6 4 11 11 H 1.48501 * 109.46807 * 334.90794 * 8 6 4 12 12 N 1.46493 * 109.46965 * 119.99381 * 2 1 3 13 13 C 1.46501 * 119.99828 * 60.00271 * 12 2 1 14 14 C 1.34778 * 120.00411 * 239.99853 * 12 2 1 15 15 O 1.21620 * 119.99583 * 9.86525 * 14 12 2 16 16 C 1.47096 * 120.00268 * 189.86288 * 14 12 2 17 17 C 1.31566 * 117.84143 * 189.94042 * 16 14 12 18 18 C 1.50344 * 123.37407 * 180.82873 * 17 16 14 19 19 N 1.46992 * 109.15408 * 348.92486 * 18 17 16 20 20 C 1.34776 * 121.32580 * 223.34877 * 19 18 17 21 21 O 1.21509 * 120.00196 * 179.97438 * 20 19 18 22 22 O 1.34640 * 119.99783 * 359.97438 * 20 19 18 23 23 C 1.45202 * 116.99709 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47148 * 59.99759 * 23 22 20 25 25 C 1.53005 * 109.47057 * 179.97438 * 23 22 20 26 26 C 1.52996 * 109.47277 * 299.99611 * 23 22 20 27 27 C 1.47297 * 117.34745 * 43.32329 * 19 18 17 28 28 C 1.49995 * 117.84109 * 9.68013 * 16 14 12 29 29 H 1.08999 * 109.47018 * 64.88065 * 1 2 3 30 30 H 1.08990 * 109.47025 * 184.88559 * 1 2 3 31 31 H 1.09000 * 109.46814 * 304.88488 * 1 2 3 32 32 H 0.97003 * 120.00527 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47442 * 96.87996 * 13 12 2 34 34 H 1.08994 * 109.47504 * 336.88019 * 13 12 2 35 35 H 1.09007 * 109.46915 * 216.87957 * 13 12 2 36 36 H 1.08007 * 118.30760 * 0.81391 * 17 16 14 37 37 H 1.08999 * 109.52450 * 108.82601 * 18 17 16 38 38 H 1.08999 * 109.52685 * 229.01584 * 18 17 16 39 39 H 1.09003 * 109.47180 * 60.00353 * 24 23 22 40 40 H 1.09003 * 109.47095 * 179.97438 * 24 23 22 41 41 H 1.08993 * 109.47269 * 299.99710 * 24 23 22 42 42 H 1.09001 * 109.46898 * 60.00093 * 25 23 22 43 43 H 1.08993 * 109.46970 * 179.97438 * 25 23 22 44 44 H 1.08997 * 109.47263 * 300.00472 * 25 23 22 45 45 H 1.09007 * 109.46913 * 59.99789 * 26 23 22 46 46 H 1.08993 * 109.47721 * 180.02562 * 26 23 22 47 47 H 1.09001 * 109.47214 * 300.00235 * 26 23 22 48 48 H 1.08997 * 109.76155 * 57.22563 * 27 19 18 49 49 H 1.09001 * 109.76004 * 177.93694 * 27 19 18 50 50 H 1.08995 * 109.31300 * 281.30172 * 28 16 14 51 51 H 1.09001 * 109.31159 * 40.72563 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.2876 -1.7587 -1.1823 6 6 2.1661 -0.0222 -2.4175 7 7 2.5095 -0.6624 -3.5138 8 14 1.8597 1.8198 -2.4690 9 1 3.1488 2.5406 -2.3138 10 1 1.2431 2.1829 -3.7701 11 1 0.9437 2.2002 -1.3638 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0930 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 2.9406 1.1682 1.9898 16 6 3.4607 -0.7763 3.1648 17 6 4.0402 -0.0807 4.1193 18 6 4.7722 -0.7089 5.2726 19 7 4.4987 -2.1530 5.2882 20 6 4.2272 -2.8024 6.4376 21 8 4.0042 -3.9967 6.4226 22 8 4.2029 -2.1276 7.6024 23 6 3.9040 -2.8914 8.8006 24 6 4.9558 -3.9876 8.9822 25 6 3.9218 -1.9618 10.0157 26 6 2.5201 -3.5298 8.6665 27 6 4.5328 -2.8622 3.9976 28 6 3.4304 -2.2749 3.1097 29 1 -0.3633 0.4362 -0.9305 30 1 -0.3633 -1.0238 0.0875 31 1 -0.3633 0.5878 0.8430 32 1 2.6033 -0.1783 -4.3491 33 1 2.4743 -2.7345 1.0804 34 1 0.7517 -2.3325 0.8827 35 1 1.5041 -2.2558 2.4940 36 1 3.9877 0.9971 4.0718 37 1 5.8433 -0.5422 5.1585 38 1 4.4308 -0.2633 6.2069 39 1 5.9418 -3.5328 9.0778 40 1 4.7317 -4.5607 9.8819 41 1 4.9435 -4.6499 8.1167 42 1 3.1727 -1.1807 9.8865 43 1 3.6970 -2.5351 10.9150 44 1 4.9079 -1.5073 10.1111 45 1 2.5078 -4.1921 7.8008 46 1 2.2955 -4.1028 9.5660 47 1 1.7707 -2.7488 8.5371 48 1 5.5051 -2.7217 3.5255 49 1 4.3504 -3.9250 4.1562 50 1 2.4586 -2.6287 3.4536 51 1 3.5864 -2.6010 2.0814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495822647.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:26 Heat of formation + Delta-G solvation = -87.415394 kcal Electronic energy + Delta-G solvation = -30866.540083 eV Core-core repulsion = 26767.098687 eV Total energy + Delta-G solvation = -4099.441396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.01330 -41.25022 -39.27684 -37.55753 -37.32392 -35.40356 -34.81907 -33.89790 -32.53750 -31.54477 -28.30977 -28.26679 -28.19482 -27.43412 -27.18118 -24.84517 -23.82135 -22.56206 -20.99841 -20.50645 -19.63151 -19.15387 -18.39283 -17.81630 -17.46876 -17.28251 -16.85530 -16.75943 -16.24561 -16.15531 -15.47915 -15.41893 -14.98883 -14.90891 -14.67069 -14.58582 -14.43521 -14.19399 -14.11835 -13.90891 -13.67396 -13.30050 -13.18677 -13.08819 -13.05746 -12.85815 -12.82327 -12.80964 -12.54527 -12.39248 -12.31999 -12.27227 -12.18209 -11.82665 -11.69407 -11.34452 -11.29860 -11.05321 -10.81296 -10.78447 -10.18510 -9.80695 -9.26800 -8.36717 -6.40074 0.40250 1.09595 1.26673 1.32938 1.42639 1.75616 2.23552 2.27421 2.30615 2.79492 3.01930 3.48370 3.73499 3.80564 3.85291 3.88842 3.99947 4.03042 4.21679 4.37562 4.38534 4.45243 4.52168 4.56723 4.60616 4.66826 4.69324 4.70204 4.74842 4.77781 4.82041 4.84107 4.89451 4.93166 4.97840 5.06667 5.09878 5.14214 5.18887 5.29547 5.33586 5.34782 5.41448 5.50814 5.52021 5.57417 5.79400 6.18276 6.30758 6.63651 6.72669 7.20449 7.26254 7.33079 8.78625 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.025229 B = 0.002510 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.586623 B =11153.900535 C =11355.213432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.226 3.774 3 H 0.036 0.964 4 C -0.520 4.520 5 H 0.054 0.946 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.921 3.079 9 H -0.283 1.283 10 H -0.275 1.275 11 H -0.248 1.248 12 N -0.591 5.591 13 C 0.065 3.935 14 C 0.530 3.470 15 O -0.603 6.603 16 C -0.164 4.164 17 C -0.088 4.088 18 C 0.149 3.851 19 N -0.599 5.599 20 C 0.655 3.345 21 O -0.588 6.588 22 O -0.366 6.366 23 C 0.125 3.875 24 C -0.178 4.178 25 C -0.136 4.136 26 C -0.180 4.180 27 C 0.130 3.870 28 C -0.109 4.109 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.268 0.732 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.058 0.942 48 H 0.092 0.908 49 H 0.104 0.896 50 H 0.101 0.899 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 -5.522 27.968 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.123 3.877 3 H 0.054 0.946 4 C -0.558 4.558 5 H 0.072 0.928 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.746 3.254 9 H -0.209 1.209 10 H -0.200 1.200 11 H -0.171 1.171 12 N -0.320 5.320 13 C -0.077 4.077 14 C 0.321 3.679 15 O -0.488 6.488 16 C -0.168 4.168 17 C -0.109 4.109 18 C 0.028 3.972 19 N -0.340 5.340 20 C 0.410 3.590 21 O -0.479 6.479 22 O -0.281 6.281 23 C 0.089 3.911 24 C -0.235 4.235 25 C -0.193 4.193 26 C -0.238 4.238 27 C 0.009 3.991 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.110 0.890 49 H 0.122 0.878 50 H 0.119 0.881 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.460 -5.301 27.786 28.498 hybrid contribution -0.118 0.890 -1.132 1.445 sum 3.343 -4.411 26.654 27.222 Atomic orbital electron populations 1.22163 0.96346 1.01621 1.00011 1.19102 0.92391 0.93398 0.82829 0.94554 1.21327 1.43844 0.97509 0.93130 0.92760 1.25564 0.94361 1.01884 0.95259 1.69990 1.49309 1.37755 1.00299 0.86142 0.79186 0.81712 0.78365 1.20927 1.20025 1.17112 1.47984 1.48889 1.13378 1.21723 1.22709 1.01394 0.80729 1.02823 1.19269 0.78848 0.86839 0.82966 1.90678 1.65497 1.16376 1.76205 1.20644 1.03510 0.96766 0.95851 1.23228 0.93308 1.01006 0.93347 1.20757 1.00791 0.78076 0.97608 1.47148 1.72204 1.09780 1.04829 1.17987 0.76140 0.83459 0.81369 1.90886 1.55822 1.14603 1.86581 1.86302 1.83916 1.42807 1.15030 1.22404 0.95523 0.92012 0.81188 1.22459 0.98294 0.98763 1.04022 1.21881 1.03723 0.99389 0.94299 1.22475 0.95260 1.01688 1.04329 1.21897 0.99550 0.97791 0.79869 1.21683 1.00623 0.89961 1.02262 0.93143 0.91555 0.94014 0.92273 0.91413 0.91288 0.88035 0.85418 0.86949 0.86202 0.91861 0.89249 0.91878 0.91430 0.88099 0.91015 0.91860 0.89189 0.92324 0.89004 0.87758 0.88118 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 8.83 71.98 0.64 -5.31 16 2 C 0.23 10.81 2.14 44.25 0.09 10.91 16 3 H 0.04 1.94 4.52 -2.39 -0.01 1.93 16 4 C -0.52 -28.59 8.84 25.60 0.23 -28.36 16 5 H 0.05 3.18 7.63 -2.91 -0.02 3.16 16 6 C 0.03 1.64 5.47 84.65 0.46 2.11 16 7 N -0.93 -56.71 13.96 21.44 0.30 -56.41 16 8 Si 0.92 45.33 26.35 68.60 1.81 47.14 16 9 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.25 -11.64 5.97 99.48 0.59 -11.05 16 12 N -0.59 -23.99 2.75 -831.07 -2.29 -26.28 16 13 C 0.06 1.99 7.69 127.77 0.98 2.97 16 14 C 0.53 21.23 7.51 86.57 0.65 21.88 16 15 O -0.60 -28.88 15.36 -4.10 -0.06 -28.94 16 16 C -0.16 -4.76 5.66 -18.33 -0.10 -4.87 16 17 C -0.09 -2.16 9.50 25.00 0.24 -1.92 16 18 C 0.15 2.60 6.61 85.43 0.57 3.16 16 19 N -0.60 -12.22 2.96 -953.39 -2.82 -15.04 16 20 C 0.65 14.94 7.76 129.79 1.01 15.95 16 21 O -0.59 -15.71 11.36 19.81 0.23 -15.48 16 22 O -0.37 -7.25 8.67 -55.50 -0.48 -7.73 16 23 C 0.12 1.95 1.13 -10.79 -0.01 1.94 16 24 C -0.18 -2.69 8.37 71.98 0.60 -2.09 16 25 C -0.14 -1.32 8.85 71.98 0.64 -0.68 16 26 C -0.18 -2.93 8.37 71.98 0.60 -2.33 16 27 C 0.13 2.56 6.49 86.31 0.56 3.12 16 28 C -0.11 -2.48 4.02 29.71 0.12 -2.36 16 29 H 0.05 2.14 6.90 -2.39 -0.02 2.12 16 30 H 0.07 2.49 6.51 -2.39 -0.02 2.48 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.07 1.99 6.06 -2.39 -0.01 1.98 16 34 H 0.07 2.15 6.37 -2.39 -0.02 2.14 16 35 H 0.10 2.45 4.79 -2.38 -0.01 2.44 16 36 H 0.13 3.42 7.21 -2.91 -0.02 3.40 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.12 1.80 7.14 -2.39 -0.02 1.79 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 1.31 5.88 -2.39 -0.01 1.29 16 42 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.06 1.38 5.88 -2.38 -0.01 1.37 16 46 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 47 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.10 2.06 7.06 -2.39 -0.02 2.05 16 50 H 0.10 2.13 5.81 -2.39 -0.01 2.12 16 51 H 0.11 2.54 5.31 -2.39 -0.01 2.52 16 Total: -1.00 -74.59 385.67 4.78 -69.81 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.83 Total: 18.80 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 7.27 Total: 14.13 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -4.81 Total: -97.73 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -0.32 Total: -52.15 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.81 Total: 47.14 kcal Total: -74.59 4.78 -69.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495822647.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.602 kcal (2) G-P(sol) polarization free energy of solvation -74.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds