Wall clock time and date at job start Tue Mar 31 2020 21:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47515 * 2 1 4 4 C 1.50705 * 109.47248 * 119.99713 * 2 1 3 5 5 H 1.08004 * 119.99898 * 119.99788 * 4 2 1 6 6 C 1.37876 * 119.99856 * 300.00535 * 4 2 1 7 7 N 1.31510 * 120.00159 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99958 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47294 * 89.99866 * 8 6 4 10 10 H 1.48500 * 109.47321 * 209.99785 * 8 6 4 11 11 H 1.48508 * 109.47296 * 329.99834 * 8 6 4 12 12 N 1.46500 * 109.47415 * 239.99656 * 2 1 3 13 13 C 1.46498 * 119.99970 * 325.30618 * 12 2 1 14 14 C 1.34779 * 119.99951 * 145.30480 * 12 2 1 15 15 O 1.21611 * 120.00167 * 187.34827 * 14 12 2 16 16 C 1.47098 * 120.00095 * 7.34852 * 14 12 2 17 17 C 1.31567 * 117.83980 * 199.55402 * 16 14 12 18 18 C 1.50349 * 123.37016 * 180.83420 * 17 16 14 19 19 N 1.46993 * 109.15448 * 348.93889 * 18 17 16 20 20 C 1.34778 * 121.32542 * 223.30935 * 19 18 17 21 21 O 1.21510 * 119.99894 * 179.97438 * 20 19 18 22 22 O 1.34639 * 120.00078 * 0.02562 * 20 19 18 23 23 C 1.45203 * 116.99743 * 179.97438 * 22 20 19 24 24 C 1.52997 * 109.47384 * 60.00118 * 23 22 20 25 25 C 1.53006 * 109.46918 * 179.97438 * 23 22 20 26 26 C 1.52999 * 109.47213 * 299.99763 * 23 22 20 27 27 C 1.47299 * 117.34670 * 43.33065 * 19 18 17 28 28 C 1.49996 * 117.83968 * 19.57632 * 16 14 12 29 29 H 1.08993 * 109.47552 * 300.00371 * 1 2 3 30 30 H 1.09003 * 109.46731 * 60.00413 * 1 2 3 31 31 H 1.09005 * 109.47088 * 179.97438 * 1 2 3 32 32 H 0.97003 * 120.00214 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46992 * 275.04356 * 13 12 2 34 34 H 1.08992 * 109.47318 * 35.04358 * 13 12 2 35 35 H 1.09000 * 109.46735 * 155.04494 * 13 12 2 36 36 H 1.07990 * 118.31441 * 0.80915 * 17 16 14 37 37 H 1.08992 * 109.53027 * 108.84386 * 18 17 16 38 38 H 1.09005 * 109.52332 * 229.04195 * 18 17 16 39 39 H 1.08999 * 109.47235 * 59.99495 * 24 23 22 40 40 H 1.08994 * 109.47436 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.46834 * 299.99805 * 24 23 22 42 42 H 1.08998 * 109.47136 * 59.99949 * 25 23 22 43 43 H 1.08994 * 109.47014 * 180.02562 * 25 23 22 44 44 H 1.08999 * 109.46863 * 299.99992 * 25 23 22 45 45 H 1.09004 * 109.47090 * 60.00143 * 26 23 22 46 46 H 1.08994 * 109.47065 * 180.02562 * 26 23 22 47 47 H 1.08998 * 109.47211 * 300.00277 * 26 23 22 48 48 H 1.09002 * 109.76001 * 177.98484 * 27 19 18 49 49 H 1.09000 * 109.75977 * 57.22576 * 27 19 18 50 50 H 1.09007 * 109.31213 * 281.27365 * 28 16 14 51 51 H 1.09005 * 109.31349 * 40.70038 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4125 10 1 1.3430 -0.9491 5.1121 11 1 2.4858 -2.5661 3.7121 12 7 2.0184 -0.6907 -1.1961 13 6 1.2791 -1.8353 -1.7342 14 6 3.1478 -0.2730 -1.8015 15 8 3.4818 -0.7569 -2.8660 16 6 3.9765 0.7682 -1.1746 17 6 4.8245 1.4217 -1.9393 18 6 5.7430 2.4956 -1.4258 19 7 5.3475 2.8542 -0.0562 20 6 5.2923 4.1403 0.3431 21 8 4.9618 4.4094 1.4810 22 8 5.6023 5.1268 -0.5190 23 6 5.5204 6.4880 -0.0203 24 6 6.4789 6.6574 1.1601 25 6 5.9065 7.4634 -1.1341 26 6 4.0899 6.7777 0.4387 27 6 5.0144 1.7520 0.8624 28 6 3.7993 1.0144 0.2944 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7087 1.1614 3.4844 33 1 1.5840 -2.7425 -1.2125 34 1 0.2101 -1.6765 -1.5925 35 1 1.4932 -1.9384 -2.7980 36 1 4.8632 1.1737 -2.9896 37 1 6.7689 2.1276 -1.4241 38 1 5.6710 3.3739 -2.0674 39 1 7.4980 6.4509 0.8331 40 1 6.4177 7.6792 1.5342 41 1 6.2042 5.9625 1.9537 42 1 5.2240 7.3430 -1.9753 43 1 5.8454 8.4852 -0.7596 44 1 6.9257 7.2569 -1.4607 45 1 3.8152 6.0828 1.2324 46 1 4.0283 7.7997 0.8127 47 1 3.4070 6.6572 -0.4022 48 1 4.7750 2.1529 1.8474 49 1 5.8591 1.0672 0.9379 50 1 2.9049 1.6170 0.4536 51 1 3.6839 0.0602 0.8086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495822648.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:30 Heat of formation + Delta-G solvation = -64.373009 kcal Electronic energy + Delta-G solvation = -31978.538507 eV Core-core repulsion = 27880.096304 eV Total energy + Delta-G solvation = -4098.442203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.70956 -39.69756 -37.86773 -36.14077 -35.93070 -34.07046 -32.86223 -32.39902 -30.67774 -29.17915 -27.46040 -27.36239 -27.32409 -25.83138 -25.04756 -23.39925 -21.81739 -21.48478 -19.71431 -19.05841 -18.23891 -17.20577 -16.84041 -16.53283 -16.04123 -15.55669 -15.24839 -14.95181 -14.61250 -14.49083 -14.32776 -14.08987 -13.75369 -13.61408 -13.36886 -12.98726 -12.80407 -12.56845 -12.37311 -12.28432 -12.18730 -12.04299 -11.90570 -11.84986 -11.69913 -11.48288 -11.38214 -11.23930 -11.12724 -10.88418 -10.81863 -10.69546 -10.44469 -10.29327 -10.20718 -9.83910 -9.77740 -9.35400 -9.17427 -8.69594 -8.39732 -8.31825 -7.60966 -6.24435 -4.28120 1.97363 2.32292 3.09370 3.18540 3.27872 3.29462 3.87871 3.93529 4.03247 4.27393 4.70318 4.73928 4.88845 5.00804 5.07117 5.29876 5.37485 5.40663 5.49436 5.52410 5.60114 5.62067 5.63590 5.72083 5.75940 5.85912 5.92445 5.94212 6.08928 6.17555 6.27441 6.31523 6.36643 6.37365 6.44777 6.48486 6.57475 6.65334 6.76116 6.78838 6.89916 6.92569 7.21745 7.30461 7.50599 7.65410 7.66394 7.85996 8.05534 8.32797 8.58116 8.68861 8.97208 9.31789 10.77547 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.004212 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.006288 B = 6646.253369 C = 7977.254264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.227 3.773 3 H 0.078 0.922 4 C -0.528 4.528 5 H 0.064 0.936 6 C 0.072 3.928 7 N -0.876 5.876 8 Si 0.890 3.110 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.587 5.587 13 C 0.086 3.914 14 C 0.542 3.458 15 O -0.579 6.579 16 C -0.120 4.120 17 C -0.142 4.142 18 C 0.150 3.850 19 N -0.595 5.595 20 C 0.654 3.346 21 O -0.566 6.566 22 O -0.366 6.366 23 C 0.136 3.864 24 C -0.182 4.182 25 C -0.139 4.139 26 C -0.184 4.184 27 C 0.127 3.873 28 C -0.138 4.138 29 H 0.096 0.904 30 H 0.013 0.987 31 H 0.036 0.964 32 H 0.267 0.733 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.099 0.901 49 H 0.068 0.932 50 H 0.112 0.888 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 9.299 -4.792 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.128 3.872 3 H 0.095 0.905 4 C -0.566 4.566 5 H 0.082 0.918 6 C -0.133 4.133 7 N -0.512 5.512 8 Si 0.718 3.282 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.317 5.317 13 C -0.058 4.058 14 C 0.332 3.668 15 O -0.462 6.462 16 C -0.123 4.123 17 C -0.163 4.163 18 C 0.027 3.973 19 N -0.336 5.336 20 C 0.409 3.591 21 O -0.455 6.455 22 O -0.281 6.281 23 C 0.099 3.901 24 C -0.240 4.240 25 C -0.196 4.196 26 C -0.241 4.241 27 C 0.007 3.993 28 C -0.174 4.174 29 H 0.115 0.885 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.145 0.855 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.117 0.883 49 H 0.086 0.914 50 H 0.130 0.870 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.678 9.335 -4.804 13.007 hybrid contribution 0.126 -0.507 0.893 1.035 sum 7.804 8.828 -3.911 12.415 Atomic orbital electron populations 1.22125 0.97823 0.99982 1.01063 1.19999 0.91915 0.94561 0.80759 0.90544 1.21250 1.31897 1.13272 0.90186 0.91770 1.24851 0.94782 0.94869 0.98801 1.69824 1.35061 1.22025 1.24329 0.86597 0.78998 0.80142 0.82501 1.20124 1.21035 1.19847 1.48152 1.23519 1.30793 1.29212 1.21498 0.96829 0.88750 0.98678 1.18601 0.81330 0.82919 0.83955 1.90664 1.72684 1.60277 1.22604 1.20932 0.97354 0.96619 0.97426 1.22837 0.96666 0.96374 1.00380 1.20481 0.97098 0.97568 0.82114 1.47214 1.69971 1.02796 1.13604 1.17898 0.76840 0.81513 0.82841 1.90893 1.53021 1.82330 1.19257 1.86273 1.82637 1.16024 1.43197 1.22001 0.96506 0.77177 0.94423 1.22509 0.98730 1.03524 0.99203 1.21844 1.02484 0.97463 0.97856 1.22516 0.94927 1.03233 1.03446 1.21993 0.97888 0.85770 0.93651 1.22412 0.97358 1.06719 0.90875 0.88519 0.96769 0.94525 0.92254 0.93392 0.91362 0.91827 0.85514 0.90285 0.88457 0.92407 0.91415 0.89240 0.91511 0.90382 0.91652 0.89060 0.91455 0.92171 0.88298 0.91397 0.87047 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.11 37.16 0.30 -2.98 16 2 C 0.23 5.02 1.90 -69.08 -0.13 4.89 16 3 H 0.08 1.80 3.90 -51.93 -0.20 1.59 16 4 C -0.53 -12.30 5.22 -34.44 -0.18 -12.48 16 5 H 0.06 1.55 7.72 -52.48 -0.41 1.14 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.88 -21.73 11.32 55.43 0.63 -21.10 16 8 Si 0.89 19.16 29.54 -169.99 -5.02 14.14 16 9 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 12 N -0.59 -12.36 2.78 -176.66 -0.49 -12.85 16 13 C 0.09 1.60 10.17 59.85 0.61 2.21 16 14 C 0.54 11.54 7.44 -12.67 -0.09 11.45 16 15 O -0.58 -13.25 15.60 5.27 0.08 -13.17 16 16 C -0.12 -2.28 5.50 -103.22 -0.57 -2.85 16 17 C -0.14 -2.31 9.48 -36.33 -0.34 -2.66 16 18 C 0.15 2.07 6.61 -5.10 -0.03 2.04 16 19 N -0.60 -9.67 2.96 -179.97 -0.53 -10.20 16 20 C 0.65 11.10 7.77 54.06 0.42 11.52 16 21 O -0.57 -10.82 11.36 -19.28 -0.22 -11.04 16 22 O -0.37 -5.36 8.67 -40.32 -0.35 -5.71 16 23 C 0.14 1.66 1.13 -90.62 -0.10 1.56 16 24 C -0.18 -2.13 8.37 37.16 0.31 -1.82 16 25 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 26 C -0.18 -2.34 8.37 37.16 0.31 -2.03 16 27 C 0.13 2.20 6.48 -3.56 -0.02 2.18 16 28 C -0.14 -2.68 3.77 -28.18 -0.11 -2.78 16 29 H 0.10 2.28 6.07 -51.93 -0.32 1.97 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.04 0.76 6.66 -51.93 -0.35 0.41 16 32 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.19 5.83 -51.93 -0.30 0.88 16 35 H 0.06 1.16 7.20 -51.93 -0.37 0.79 16 36 H 0.13 2.04 7.32 -52.49 -0.38 1.65 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.22 7.15 -51.93 -0.37 0.85 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.10 1.86 7.06 -51.93 -0.37 1.49 16 49 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.11 2.47 5.36 -51.92 -0.28 2.19 16 51 H 0.15 3.24 4.41 -51.93 -0.23 3.01 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -27.46 386.37 -7.45 -34.91 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -7.97 Total: 10.27 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 0.60 Total: 8.93 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.40 Total: -44.16 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.49 Total: -29.92 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -27.46 -7.45 -34.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495822648.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.460 kcal (2) G-P(sol) polarization free energy of solvation -27.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds