Wall clock time and date at job start Tue Mar 31 2020 21:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47515 * 2 1 4 4 C 1.50705 * 109.47248 * 119.99713 * 2 1 3 5 5 H 1.08004 * 119.99898 * 119.99788 * 4 2 1 6 6 C 1.37876 * 119.99856 * 300.00535 * 4 2 1 7 7 N 1.31510 * 120.00159 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99958 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47294 * 89.99866 * 8 6 4 10 10 H 1.48500 * 109.47321 * 209.99785 * 8 6 4 11 11 H 1.48508 * 109.47296 * 329.99834 * 8 6 4 12 12 N 1.46500 * 109.47415 * 239.99656 * 2 1 3 13 13 C 1.46498 * 119.99970 * 325.30618 * 12 2 1 14 14 C 1.34779 * 119.99951 * 145.30480 * 12 2 1 15 15 O 1.21611 * 120.00167 * 187.34827 * 14 12 2 16 16 C 1.47098 * 120.00095 * 7.34852 * 14 12 2 17 17 C 1.31567 * 117.83980 * 199.55402 * 16 14 12 18 18 C 1.50349 * 123.37016 * 180.83420 * 17 16 14 19 19 N 1.46993 * 109.15448 * 348.93889 * 18 17 16 20 20 C 1.34778 * 121.32542 * 223.30935 * 19 18 17 21 21 O 1.21510 * 119.99894 * 179.97438 * 20 19 18 22 22 O 1.34639 * 120.00078 * 0.02562 * 20 19 18 23 23 C 1.45203 * 116.99743 * 179.97438 * 22 20 19 24 24 C 1.52997 * 109.47384 * 60.00118 * 23 22 20 25 25 C 1.53006 * 109.46918 * 179.97438 * 23 22 20 26 26 C 1.52999 * 109.47213 * 299.99763 * 23 22 20 27 27 C 1.47299 * 117.34670 * 43.33065 * 19 18 17 28 28 C 1.49996 * 117.83968 * 19.57632 * 16 14 12 29 29 H 1.08993 * 109.47552 * 300.00371 * 1 2 3 30 30 H 1.09003 * 109.46731 * 60.00413 * 1 2 3 31 31 H 1.09005 * 109.47088 * 179.97438 * 1 2 3 32 32 H 0.97003 * 120.00214 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46992 * 275.04356 * 13 12 2 34 34 H 1.08992 * 109.47318 * 35.04358 * 13 12 2 35 35 H 1.09000 * 109.46735 * 155.04494 * 13 12 2 36 36 H 1.07990 * 118.31441 * 0.80915 * 17 16 14 37 37 H 1.08992 * 109.53027 * 108.84386 * 18 17 16 38 38 H 1.09005 * 109.52332 * 229.04195 * 18 17 16 39 39 H 1.08999 * 109.47235 * 59.99495 * 24 23 22 40 40 H 1.08994 * 109.47436 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.46834 * 299.99805 * 24 23 22 42 42 H 1.08998 * 109.47136 * 59.99949 * 25 23 22 43 43 H 1.08994 * 109.47014 * 180.02562 * 25 23 22 44 44 H 1.08999 * 109.46863 * 299.99992 * 25 23 22 45 45 H 1.09004 * 109.47090 * 60.00143 * 26 23 22 46 46 H 1.08994 * 109.47065 * 180.02562 * 26 23 22 47 47 H 1.08998 * 109.47211 * 300.00277 * 26 23 22 48 48 H 1.09002 * 109.76001 * 177.98484 * 27 19 18 49 49 H 1.09000 * 109.75977 * 57.22576 * 27 19 18 50 50 H 1.09007 * 109.31213 * 281.27365 * 28 16 14 51 51 H 1.09005 * 109.31349 * 40.70038 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4125 10 1 1.3430 -0.9491 5.1121 11 1 2.4858 -2.5661 3.7121 12 7 2.0184 -0.6907 -1.1961 13 6 1.2791 -1.8353 -1.7342 14 6 3.1478 -0.2730 -1.8015 15 8 3.4818 -0.7569 -2.8660 16 6 3.9765 0.7682 -1.1746 17 6 4.8245 1.4217 -1.9393 18 6 5.7430 2.4956 -1.4258 19 7 5.3475 2.8542 -0.0562 20 6 5.2923 4.1403 0.3431 21 8 4.9618 4.4094 1.4810 22 8 5.6023 5.1268 -0.5190 23 6 5.5204 6.4880 -0.0203 24 6 6.4789 6.6574 1.1601 25 6 5.9065 7.4634 -1.1341 26 6 4.0899 6.7777 0.4387 27 6 5.0144 1.7520 0.8624 28 6 3.7993 1.0144 0.2944 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7087 1.1614 3.4844 33 1 1.5840 -2.7425 -1.2125 34 1 0.2101 -1.6765 -1.5925 35 1 1.4932 -1.9384 -2.7980 36 1 4.8632 1.1737 -2.9896 37 1 6.7689 2.1276 -1.4241 38 1 5.6710 3.3739 -2.0674 39 1 7.4980 6.4509 0.8331 40 1 6.4177 7.6792 1.5342 41 1 6.2042 5.9625 1.9537 42 1 5.2240 7.3430 -1.9753 43 1 5.8454 8.4852 -0.7596 44 1 6.9257 7.2569 -1.4607 45 1 3.8152 6.0828 1.2324 46 1 4.0283 7.7997 0.8127 47 1 3.4070 6.6572 -0.4022 48 1 4.7750 2.1529 1.8474 49 1 5.8591 1.0672 0.9379 50 1 2.9049 1.6170 0.4536 51 1 3.6839 0.0602 0.8086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495822648.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:29 Heat of formation + Delta-G solvation = -78.710385 kcal Electronic energy + Delta-G solvation = -31979.160223 eV Core-core repulsion = 27880.096304 eV Total energy + Delta-G solvation = -4099.063919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.97851 -41.22602 -39.16485 -37.66575 -37.44212 -35.18420 -34.58921 -33.79691 -32.07914 -30.93614 -28.83348 -28.32970 -28.24333 -27.48346 -26.57343 -24.83733 -23.34102 -22.85754 -21.00864 -20.53243 -19.52704 -18.72799 -18.62583 -17.70661 -17.33411 -17.00101 -16.86977 -16.30587 -16.16656 -15.97273 -15.56407 -15.42594 -15.09805 -14.92504 -14.62704 -14.41639 -14.28897 -13.84261 -13.83118 -13.53096 -13.40937 -13.28202 -13.13150 -13.05043 -12.87386 -12.83379 -12.81367 -12.57728 -12.49256 -12.40687 -12.33403 -12.22562 -12.06301 -11.96178 -11.53206 -11.34695 -11.06689 -11.03127 -10.80498 -10.45267 -9.96235 -9.68606 -9.29015 -8.09435 -6.16178 0.51808 1.12515 1.44481 1.49980 1.55274 1.79707 2.27268 2.35201 2.52674 2.85662 3.16931 3.61470 3.80311 3.84477 3.94404 3.99453 4.05898 4.20244 4.35913 4.47595 4.50932 4.54937 4.63363 4.64841 4.67837 4.73007 4.75081 4.80107 4.86890 4.89468 4.91670 4.92633 4.96127 5.01434 5.10352 5.16211 5.26960 5.28667 5.32879 5.37801 5.47039 5.50666 5.54660 5.58688 5.78389 5.90283 6.12198 6.23449 6.37864 6.59637 6.86525 7.29492 7.30831 7.46814 8.91210 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.004212 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.006288 B = 6646.253369 C = 7977.254264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.233 3.767 3 H 0.065 0.935 4 C -0.521 4.521 5 H 0.054 0.946 6 C 0.040 3.960 7 N -0.899 5.899 8 Si 0.937 3.063 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.594 5.594 13 C 0.084 3.916 14 C 0.537 3.463 15 O -0.600 6.600 16 C -0.157 4.157 17 C -0.103 4.103 18 C 0.149 3.851 19 N -0.598 5.598 20 C 0.651 3.349 21 O -0.594 6.594 22 O -0.363 6.363 23 C 0.124 3.876 24 C -0.178 4.178 25 C -0.132 4.132 26 C -0.182 4.182 27 C 0.134 3.866 28 C -0.116 4.116 29 H 0.076 0.924 30 H 0.024 0.976 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.092 0.908 47 H 0.057 0.943 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.078 0.922 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.569 10.455 -6.110 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.133 3.867 3 H 0.082 0.918 4 C -0.559 4.559 5 H 0.072 0.928 6 C -0.162 4.162 7 N -0.537 5.537 8 Si 0.763 3.237 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.197 1.197 12 N -0.323 5.323 13 C -0.058 4.058 14 C 0.328 3.672 15 O -0.485 6.485 16 C -0.160 4.160 17 C -0.123 4.123 18 C 0.028 3.972 19 N -0.338 5.338 20 C 0.406 3.594 21 O -0.485 6.485 22 O -0.277 6.277 23 C 0.088 3.912 24 C -0.235 4.235 25 C -0.189 4.189 26 C -0.239 4.239 27 C 0.013 3.987 28 C -0.152 4.152 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.111 0.889 47 H 0.076 0.924 48 H 0.095 0.905 49 H 0.109 0.891 50 H 0.095 0.905 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.491 10.488 -6.143 15.421 hybrid contribution -0.395 -0.788 1.223 1.508 sum 9.096 9.699 -4.920 14.178 Atomic orbital electron populations 1.21992 0.97470 1.00152 1.00546 1.19810 0.92037 0.94005 0.80859 0.91784 1.21261 1.31248 1.12613 0.90787 0.92761 1.25296 0.95038 0.95290 1.00577 1.69920 1.36264 1.23107 1.24361 0.85873 0.78407 0.79257 0.80134 1.19974 1.21423 1.19749 1.48209 1.23881 1.31298 1.28917 1.21598 0.97312 0.88137 0.98797 1.18969 0.81326 0.83119 0.83742 1.90637 1.73228 1.61181 1.23478 1.20783 0.99527 0.98421 0.97267 1.23153 0.94246 0.94643 1.00298 1.20790 0.97908 0.97606 0.80907 1.47225 1.69849 1.02427 1.14347 1.18046 0.76525 0.82027 0.82771 1.90895 1.54070 1.82845 1.20686 1.86281 1.82172 1.16670 1.42602 1.22426 0.96186 0.76501 0.96127 1.22455 0.98941 1.04081 0.98041 1.21864 1.02963 0.97488 0.96593 1.22481 0.95518 1.03764 1.02136 1.21792 0.97853 0.86273 0.92789 1.21917 0.96925 1.04994 0.91389 0.90556 0.95679 0.93920 0.92626 0.93169 0.90200 0.91439 0.84668 0.86795 0.86284 0.91458 0.89048 0.92514 0.91361 0.87952 0.90652 0.92770 0.88892 0.92433 0.90461 0.89121 0.90472 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.27 8.11 71.98 0.58 -5.68 16 2 C 0.23 10.51 1.90 44.25 0.08 10.59 16 3 H 0.07 3.13 3.90 -2.38 -0.01 3.12 16 4 C -0.52 -24.75 5.22 25.60 0.13 -24.62 16 5 H 0.05 2.66 7.72 -2.91 -0.02 2.64 16 6 C 0.04 1.94 5.30 84.66 0.45 2.39 16 7 N -0.90 -45.94 11.32 21.45 0.24 -45.70 16 8 Si 0.94 39.87 29.54 68.60 2.03 41.89 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 N -0.59 -25.12 2.78 -831.09 -2.31 -27.43 16 13 C 0.08 3.11 10.17 127.77 1.30 4.41 16 14 C 0.54 22.77 7.44 86.57 0.64 23.42 16 15 O -0.60 -27.04 15.60 -4.07 -0.06 -27.10 16 16 C -0.16 -5.88 5.50 -18.33 -0.10 -5.98 16 17 C -0.10 -3.13 9.48 25.00 0.24 -2.89 16 18 C 0.15 3.65 6.61 85.43 0.57 4.22 16 19 N -0.60 -18.73 2.96 -953.69 -2.82 -21.55 16 20 C 0.65 21.76 7.77 129.79 1.01 22.77 16 21 O -0.59 -23.33 11.36 19.81 0.23 -23.11 16 22 O -0.36 -9.99 8.67 -55.48 -0.48 -10.47 16 23 C 0.12 2.79 1.13 -10.79 -0.01 2.78 16 24 C -0.18 -3.86 8.37 71.98 0.60 -3.26 16 25 C -0.13 -1.91 8.85 71.98 0.64 -1.27 16 26 C -0.18 -4.49 8.37 71.98 0.60 -3.88 16 27 C 0.13 4.64 6.48 86.25 0.56 5.20 16 28 C -0.12 -4.59 3.77 29.66 0.11 -4.48 16 29 H 0.08 3.68 6.07 -2.39 -0.01 3.67 16 30 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 31 H 0.04 1.76 6.66 -2.38 -0.02 1.74 16 32 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 2.72 5.83 -2.39 -0.01 2.71 16 35 H 0.07 2.43 7.20 -2.39 -0.02 2.41 16 36 H 0.14 3.97 7.32 -2.92 -0.02 3.95 16 37 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.12 2.52 7.15 -2.38 -0.02 2.51 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 1.64 5.88 -2.39 -0.01 1.62 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.05 1.77 5.88 -2.39 -0.01 1.75 16 46 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.08 3.02 7.06 -2.39 -0.02 3.00 16 49 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 50 H 0.08 3.59 5.36 -2.38 -0.01 3.57 16 51 H 0.13 5.69 4.41 -2.38 -0.01 5.68 16 Total: -1.00 -60.99 386.37 5.16 -55.84 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.94 Total: 33.92 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 7.41 Total: 23.70 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -4.89 Total: -94.68 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -0.32 Total: -60.68 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.89 kcal Total: -60.99 5.16 -55.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495822648.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.874 kcal (2) G-P(sol) polarization free energy of solvation -60.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds