Wall clock time and date at job start Tue Mar 31 2020 21:58:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08992 * 109.47301 * 2 1
4 4 C 1.50694 * 109.47156 * 120.00629 * 2 1 3
5 5 O 1.21295 * 120.00497 * 119.99994 * 4 2 1
6 6 N 1.34782 * 120.00085 * 299.99884 * 4 2 1
7 7 C 1.37091 * 120.00101 * 180.02562 * 6 4 2
8 8 H 1.07998 * 120.00182 * 222.86488 * 7 6 4
9 9 C 1.38955 * 120.00540 * 42.86731 * 7 6 4
10 10 N 1.31412 * 119.99436 * 18.67487 * 9 7 6
11 11 Si 1.86791 * 120.00384 * 198.67499 * 9 7 6
12 12 H 1.48497 * 109.47303 * 0.02562 * 11 9 7
13 13 H 1.48504 * 109.46842 * 119.99885 * 11 9 7
14 14 H 1.48495 * 109.47401 * 239.99741 * 11 9 7
15 15 C 1.46496 * 119.99827 * 359.97438 * 6 4 2
16 16 C 1.52996 * 117.50143 * 188.41768 * 15 6 4
17 17 C 1.52996 * 117.49911 * 119.78889 * 15 6 4
18 18 N 1.46509 * 109.46757 * 240.00231 * 2 1 3
19 19 C 1.34779 * 119.99571 * 120.00233 * 18 2 1
20 20 O 1.21509 * 120.00211 * 354.73430 * 19 18 2
21 21 O 1.34633 * 119.99879 * 174.73762 * 19 18 2
22 22 C 1.45200 * 117.00408 * 180.02562 * 21 19 18
23 23 C 1.53003 * 109.46950 * 59.99571 * 22 21 19
24 24 C 1.52996 * 109.47498 * 180.02562 * 22 21 19
25 25 C 1.52997 * 109.46762 * 299.99993 * 22 21 19
26 26 C 1.46495 * 120.00067 * 300.00182 * 18 2 1
27 27 C 1.52994 * 117.49808 * 135.46696 * 26 18 2
28 28 C 1.52995 * 117.50024 * 66.84419 * 26 18 2
29 29 H 1.09002 * 109.47279 * 59.99505 * 1 2 3
30 30 H 1.09002 * 109.47577 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.46974 * 299.99607 * 1 2 3
32 32 H 0.97000 * 119.99674 * 184.89767 * 10 9 7
33 33 H 1.09005 * 115.54879 * 334.11927 * 15 6 4
34 34 H 1.09000 * 117.49908 * 359.97438 * 16 15 6
35 35 H 1.08997 * 117.50315 * 145.02270 * 16 15 6
36 36 H 1.09002 * 117.49891 * 214.97504 * 17 15 6
37 37 H 1.08991 * 117.50149 * 0.02562 * 17 15 6
38 38 H 1.09000 * 109.46817 * 60.00420 * 23 22 21
39 39 H 1.09000 * 109.46837 * 180.02562 * 23 22 21
40 40 H 1.08999 * 109.47199 * 300.00483 * 23 22 21
41 41 H 1.08997 * 109.47326 * 59.99395 * 24 22 21
42 42 H 1.08995 * 109.46958 * 180.02562 * 24 22 21
43 43 H 1.09000 * 109.46933 * 299.99987 * 24 22 21
44 44 H 1.09001 * 109.47362 * 60.00146 * 25 22 21
45 45 H 1.09000 * 109.47175 * 179.97438 * 25 22 21
46 46 H 1.09007 * 109.47420 * 299.99860 * 25 22 21
47 47 H 1.09004 * 115.54838 * 281.17205 * 26 18 2
48 48 H 1.09000 * 117.49922 * 359.97438 * 27 26 18
49 49 H 1.09005 * 117.50195 * 145.01591 * 27 26 18
50 50 H 1.09004 * 117.49986 * 214.97786 * 28 26 18
51 51 H 1.09002 * 117.50077 * 359.97438 * 28 26 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7105 1.2303
5 8 2.7296 -1.6967 1.1190
6 7 1.7067 -0.2502 2.4545
7 6 2.1641 -0.8962 3.5738
8 1 1.5017 -1.0614 4.4106
9 6 3.4801 -1.3386 3.6318
10 7 4.3776 -0.8397 2.8117
11 14 3.9733 -2.6424 4.8752
12 1 2.7863 -3.0379 5.6750
13 1 4.5069 -3.8303 4.1615
14 1 5.0188 -2.0959 5.7771
15 6 0.8650 0.9412 2.5891
16 6 0.6922 1.5296 3.9908
17 6 -0.4673 0.7855 3.3250
18 7 2.0182 -0.6906 -1.1963
19 6 2.7931 -0.0355 -2.0834
20 8 3.0081 1.1520 -1.9418
21 8 3.3289 -0.6969 -3.1265
22 6 4.1533 0.0720 -4.0416
23 6 5.3388 0.6694 -3.2807
24 6 4.6693 -0.8423 -5.1544
25 6 3.3200 1.1996 -4.6539
26 6 1.6643 -2.0931 -1.4282
27 6 1.2237 -2.4864 -2.8395
28 6 0.1949 -2.4137 -1.7095
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 5.2790 -1.1980 2.8031
33 1 0.8987 1.6378 1.7513
34 1 1.2044 1.0299 4.8130
35 1 0.6122 2.6133 4.0754
36 1 -1.3099 1.3799 2.9717
37 1 -0.7173 -0.2032 3.7095
38 1 5.9324 -0.1339 -2.8444
39 1 5.9574 1.2470 -3.9676
40 1 4.9708 1.3209 -2.4881
41 1 3.8246 -1.2675 -5.6963
42 1 5.2885 -0.2651 -5.8410
43 1 5.2629 -1.6459 -4.7185
44 1 2.9520 1.8512 -3.8614
45 1 3.9389 1.7772 -5.3405
46 1 2.4754 0.7741 -5.1960
47 1 2.2385 -2.8234 -0.8580
48 1 1.1968 -1.7016 -3.5954
49 1 1.5082 -3.4756 -3.1983
50 1 -0.1974 -3.3550 -1.3247
51 1 -0.5085 -1.5811 -1.7215
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000496370571.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:58:22
Heat of formation + Delta-G solvation = -29.232127 kcal
Electronic energy + Delta-G solvation = -32577.691767 eV
Core-core repulsion = 28480.773387 eV
Total energy + Delta-G solvation = -4096.918380 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.64063 -39.09250 -37.71663 -36.38450 -35.96696 -33.78335 -33.59248 -32.62203
-31.14814 -29.92629 -27.34882 -27.23901 -25.24383 -23.86691 -22.91187 -22.08002
-21.74873 -21.47718 -20.81163 -19.51654 -18.70203 -17.45766 -16.51729 -16.32482
-16.07693 -15.85345 -15.20950 -14.90995 -14.61084 -14.45366 -14.10964 -13.91436
-13.71992 -13.47753 -13.38884 -12.94750 -12.59485 -12.45234 -12.32562 -12.21167
-12.01410 -11.78690 -11.75744 -11.46294 -11.35759 -11.30507 -11.10022 -11.04303
-10.92612 -10.86687 -10.82012 -10.41969 -10.29404 -10.15152 -10.12583 -10.11132
-9.94135 -9.71486 -9.51626 -8.86709 -8.51112 -7.75576 -7.02632 -6.07478
-3.87372 2.45696 3.24090 3.31628 3.39951 3.41851 3.90777 4.08403
4.13608 4.28626 4.74595 4.82654 4.83103 4.86674 5.01296 5.11043
5.15058 5.21971 5.27858 5.49687 5.50720 5.55832 5.60586 5.65487
5.68430 5.71064 5.72947 5.80304 5.81307 5.85115 5.93581 5.97820
6.00682 6.04199 6.08365 6.20874 6.23494 6.28844 6.38071 6.42690
6.51367 6.52212 6.53806 6.71663 6.79110 6.89683 6.94481 7.62243
7.81494 8.25772 8.75405 9.05084 9.15599 9.64987 10.26017 10.98383
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.012462 B = 0.004280 C = 0.003937
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2246.354582 B = 6540.683301 C = 7110.730329
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.142 3.858
3 H 0.109 0.891
4 C 0.478 3.522
5 O -0.520 6.520
6 N -0.423 5.423
7 C -0.344 4.344
8 H 0.079 0.921
9 C 0.073 3.927
10 N -0.826 5.826
11 Si 0.905 3.095
12 H -0.272 1.272
13 H -0.282 1.282
14 H -0.287 1.287
15 C 0.072 3.928
16 C -0.176 4.176
17 C -0.206 4.206
18 N -0.542 5.542
19 C 0.660 3.340
20 O -0.575 6.575
21 O -0.353 6.353
22 C 0.133 3.867
23 C -0.183 4.183
24 C -0.138 4.138
25 C -0.181 4.181
26 C 0.088 3.912
27 C -0.170 4.170
28 C -0.190 4.190
29 H 0.054 0.946
30 H 0.070 0.930
31 H 0.086 0.914
32 H 0.263 0.737
33 H 0.105 0.895
34 H 0.107 0.893
35 H 0.084 0.916
36 H 0.084 0.916
37 H 0.092 0.908
38 H 0.060 0.940
39 H 0.064 0.936
40 H 0.089 0.911
41 H 0.064 0.936
42 H 0.076 0.924
43 H 0.066 0.934
44 H 0.088 0.912
45 H 0.065 0.935
46 H 0.056 0.944
47 H 0.129 0.871
48 H 0.095 0.905
49 H 0.099 0.901
50 H 0.100 0.900
51 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.192 1.803 -12.720 14.262
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.036 3.964
3 H 0.127 0.873
4 C 0.264 3.736
5 O -0.397 6.397
6 N -0.144 5.144
7 C -0.471 4.471
8 H 0.096 0.904
9 C -0.138 4.138
10 N -0.460 5.460
11 Si 0.732 3.268
12 H -0.196 1.196
13 H -0.208 1.208
14 H -0.213 1.213
15 C -0.035 4.035
16 C -0.213 4.213
17 C -0.245 4.245
18 N -0.279 5.279
19 C 0.415 3.585
20 O -0.465 6.465
21 O -0.267 6.267
22 C 0.096 3.904
23 C -0.240 4.240
24 C -0.195 4.195
25 C -0.238 4.238
26 C -0.016 4.016
27 C -0.207 4.207
28 C -0.227 4.227
29 H 0.073 0.927
30 H 0.089 0.911
31 H 0.105 0.895
32 H 0.073 0.927
33 H 0.123 0.877
34 H 0.125 0.875
35 H 0.102 0.898
36 H 0.103 0.897
37 H 0.111 0.889
38 H 0.079 0.921
39 H 0.083 0.917
40 H 0.108 0.892
41 H 0.083 0.917
42 H 0.094 0.906
43 H 0.085 0.915
44 H 0.107 0.893
45 H 0.084 0.916
46 H 0.075 0.925
47 H 0.147 0.853
48 H 0.113 0.887
49 H 0.118 0.882
50 H 0.118 0.882
51 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -5.462 1.686 -12.825 14.041
hybrid contribution 0.469 -0.448 0.616 0.894
sum -4.993 1.238 -12.209 13.248
Atomic orbital electron populations
1.22511 0.93849 1.03563 1.02842 1.20987 0.94444 0.97545 0.83425
0.87299 1.19848 0.84226 0.86117 0.83382 1.90503 1.37306 1.26908
1.84970 1.42702 1.45348 1.21591 1.04779 1.18882 0.94015 1.38186
0.96009 0.90358 1.25171 0.95032 0.96944 0.96634 1.69912 1.03168
1.36556 1.36333 0.86264 0.78379 0.81763 0.80345 1.19610 1.20763
1.21304 1.21786 0.94248 0.92038 0.95402 1.23113 1.01808 0.98426
0.98001 1.23333 0.92313 1.02058 1.06833 1.45764 1.50160 1.11044
1.20954 1.17877 0.77762 0.83463 0.79365 1.90845 1.64593 1.14313
1.76799 1.86397 1.62146 1.42309 1.35895 1.21978 0.89622 0.91065
0.87742 1.22501 0.97199 1.02265 1.02050 1.21818 1.01435 0.99734
0.96509 1.22503 1.00122 0.98990 1.02219 1.21674 0.96986 0.83951
0.98979 1.23171 1.02982 1.02849 0.91735 1.23490 0.92881 1.03499
1.02867 0.92697 0.91082 0.89536 0.92691 0.87734 0.87463 0.89804
0.89730 0.88932 0.92107 0.91670 0.89222 0.91722 0.90569 0.91502
0.89341 0.91559 0.92518 0.85312 0.88679 0.88227 0.88170 0.88103
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.71 7.69 37.16 0.29 -2.43 16
2 C 0.14 2.87 2.27 -69.08 -0.16 2.72 16
3 H 0.11 2.34 6.34 -51.93 -0.33 2.01 16
4 C 0.48 11.86 6.27 -10.99 -0.07 11.79 16
5 O -0.52 -14.74 12.31 5.54 0.07 -14.68 16
6 N -0.42 -10.31 2.86 -107.74 -0.31 -10.62 16
7 C -0.34 -9.20 7.81 -14.93 -0.12 -9.32 16
8 H 0.08 2.03 7.43 -52.49 -0.39 1.64 16
9 C 0.07 2.04 4.37 -17.47 -0.08 1.96 16
10 N -0.83 -24.67 11.64 55.50 0.65 -24.02 16
11 Si 0.91 21.81 29.60 -169.99 -5.03 16.78 16
12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
15 C 0.07 1.40 4.31 -67.94 -0.29 1.10 16
16 C -0.18 -3.12 9.81 -26.73 -0.26 -3.38 16
17 C -0.21 -3.37 9.43 -26.73 -0.25 -3.62 16
18 N -0.54 -10.57 2.48 -165.62 -0.41 -10.98 16
19 C 0.66 12.94 7.41 54.06 0.40 13.35 16
20 O -0.58 -12.09 11.22 -19.28 -0.22 -12.30 16
21 O -0.35 -6.01 7.55 -40.31 -0.30 -6.32 16
22 C 0.13 1.86 1.13 -90.62 -0.10 1.76 16
23 C -0.18 -2.72 8.37 37.16 0.31 -2.40 16
24 C -0.14 -1.46 8.85 37.16 0.33 -1.13 16
25 C -0.18 -2.31 8.37 37.16 0.31 -2.00 16
26 C 0.09 1.55 4.92 -67.94 -0.33 1.21 16
27 C -0.17 -2.30 9.13 -26.74 -0.24 -2.55 16
28 C -0.19 -2.61 8.62 -26.74 -0.23 -2.84 16
29 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16
30 H 0.07 1.12 5.53 -51.93 -0.29 0.83 16
31 H 0.09 1.32 4.40 -51.93 -0.23 1.09 16
32 H 0.26 7.62 8.32 -40.82 -0.34 7.29 16
33 H 0.11 1.88 6.18 -51.93 -0.32 1.56 16
34 H 0.11 2.13 6.85 -51.93 -0.36 1.77 16
35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
37 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16
38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
40 H 0.09 1.62 5.88 -51.93 -0.31 1.31 16
41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
44 H 0.09 1.36 5.88 -51.93 -0.31 1.06 16
45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
47 H 0.13 2.61 7.09 -51.93 -0.37 2.25 16
48 H 0.09 1.30 7.30 -51.93 -0.38 0.92 16
49 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16
50 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16
51 H 0.10 1.33 6.17 -51.93 -0.32 1.01 16
LS Contribution 390.89 15.07 5.89 5.89
Total: -1.00 -32.96 390.89 -8.38 -41.34
By element:
Atomic # 1 Polarization: 18.89 SS G_CDS: -8.22 Total: 10.67 kcal
Atomic # 6 Polarization: 4.73 SS G_CDS: -0.50 Total: 4.23 kcal
Atomic # 7 Polarization: -45.54 SS G_CDS: -0.07 Total: -45.61 kcal
Atomic # 8 Polarization: -32.84 SS G_CDS: -0.45 Total: -33.30 kcal
Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -32.96 -8.38 -41.34 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000496370571.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.110 kcal
(2) G-P(sol) polarization free energy of solvation -32.960 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.850 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.232 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds