Wall clock time and date at job start Tue Mar 31 2020 21:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47301 * 2 1 4 4 C 1.50694 * 109.47156 * 120.00629 * 2 1 3 5 5 O 1.21295 * 120.00497 * 119.99994 * 4 2 1 6 6 N 1.34782 * 120.00085 * 299.99884 * 4 2 1 7 7 C 1.37091 * 120.00101 * 180.02562 * 6 4 2 8 8 H 1.07998 * 120.00182 * 222.86488 * 7 6 4 9 9 C 1.38955 * 120.00540 * 42.86731 * 7 6 4 10 10 N 1.31412 * 119.99436 * 18.67487 * 9 7 6 11 11 Si 1.86791 * 120.00384 * 198.67499 * 9 7 6 12 12 H 1.48497 * 109.47303 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46842 * 119.99885 * 11 9 7 14 14 H 1.48495 * 109.47401 * 239.99741 * 11 9 7 15 15 C 1.46496 * 119.99827 * 359.97438 * 6 4 2 16 16 C 1.52996 * 117.50143 * 188.41768 * 15 6 4 17 17 C 1.52996 * 117.49911 * 119.78889 * 15 6 4 18 18 N 1.46509 * 109.46757 * 240.00231 * 2 1 3 19 19 C 1.34779 * 119.99571 * 120.00233 * 18 2 1 20 20 O 1.21509 * 120.00211 * 354.73430 * 19 18 2 21 21 O 1.34633 * 119.99879 * 174.73762 * 19 18 2 22 22 C 1.45200 * 117.00408 * 180.02562 * 21 19 18 23 23 C 1.53003 * 109.46950 * 59.99571 * 22 21 19 24 24 C 1.52996 * 109.47498 * 180.02562 * 22 21 19 25 25 C 1.52997 * 109.46762 * 299.99993 * 22 21 19 26 26 C 1.46495 * 120.00067 * 300.00182 * 18 2 1 27 27 C 1.52994 * 117.49808 * 135.46696 * 26 18 2 28 28 C 1.52995 * 117.50024 * 66.84419 * 26 18 2 29 29 H 1.09002 * 109.47279 * 59.99505 * 1 2 3 30 30 H 1.09002 * 109.47577 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46974 * 299.99607 * 1 2 3 32 32 H 0.97000 * 119.99674 * 184.89767 * 10 9 7 33 33 H 1.09005 * 115.54879 * 334.11927 * 15 6 4 34 34 H 1.09000 * 117.49908 * 359.97438 * 16 15 6 35 35 H 1.08997 * 117.50315 * 145.02270 * 16 15 6 36 36 H 1.09002 * 117.49891 * 214.97504 * 17 15 6 37 37 H 1.08991 * 117.50149 * 0.02562 * 17 15 6 38 38 H 1.09000 * 109.46817 * 60.00420 * 23 22 21 39 39 H 1.09000 * 109.46837 * 180.02562 * 23 22 21 40 40 H 1.08999 * 109.47199 * 300.00483 * 23 22 21 41 41 H 1.08997 * 109.47326 * 59.99395 * 24 22 21 42 42 H 1.08995 * 109.46958 * 180.02562 * 24 22 21 43 43 H 1.09000 * 109.46933 * 299.99987 * 24 22 21 44 44 H 1.09001 * 109.47362 * 60.00146 * 25 22 21 45 45 H 1.09000 * 109.47175 * 179.97438 * 25 22 21 46 46 H 1.09007 * 109.47420 * 299.99860 * 25 22 21 47 47 H 1.09004 * 115.54838 * 281.17205 * 26 18 2 48 48 H 1.09000 * 117.49922 * 359.97438 * 27 26 18 49 49 H 1.09005 * 117.50195 * 145.01591 * 27 26 18 50 50 H 1.09004 * 117.49986 * 214.97786 * 28 26 18 51 51 H 1.09002 * 117.50077 * 359.97438 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7067 -0.2502 2.4545 7 6 2.1641 -0.8962 3.5738 8 1 1.5017 -1.0614 4.4106 9 6 3.4801 -1.3386 3.6318 10 7 4.3776 -0.8397 2.8117 11 14 3.9733 -2.6424 4.8752 12 1 2.7863 -3.0379 5.6750 13 1 4.5069 -3.8303 4.1615 14 1 5.0188 -2.0959 5.7771 15 6 0.8650 0.9412 2.5891 16 6 0.6922 1.5296 3.9908 17 6 -0.4673 0.7855 3.3250 18 7 2.0182 -0.6906 -1.1963 19 6 2.7931 -0.0355 -2.0834 20 8 3.0081 1.1520 -1.9418 21 8 3.3289 -0.6969 -3.1265 22 6 4.1533 0.0720 -4.0416 23 6 5.3388 0.6694 -3.2807 24 6 4.6693 -0.8423 -5.1544 25 6 3.3200 1.1996 -4.6539 26 6 1.6643 -2.0931 -1.4282 27 6 1.2237 -2.4864 -2.8395 28 6 0.1949 -2.4137 -1.7095 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 5.2790 -1.1980 2.8031 33 1 0.8987 1.6378 1.7513 34 1 1.2044 1.0299 4.8130 35 1 0.6122 2.6133 4.0754 36 1 -1.3099 1.3799 2.9717 37 1 -0.7173 -0.2032 3.7095 38 1 5.9324 -0.1339 -2.8444 39 1 5.9574 1.2470 -3.9676 40 1 4.9708 1.3209 -2.4881 41 1 3.8246 -1.2675 -5.6963 42 1 5.2885 -0.2651 -5.8410 43 1 5.2629 -1.6459 -4.7185 44 1 2.9520 1.8512 -3.8614 45 1 3.9389 1.7772 -5.3405 46 1 2.4754 0.7741 -5.1960 47 1 2.2385 -2.8234 -0.8580 48 1 1.1968 -1.7016 -3.5954 49 1 1.5082 -3.4756 -3.1983 50 1 -0.1974 -3.3550 -1.3247 51 1 -0.5085 -1.5811 -1.7215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496370571.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:22 Heat of formation + Delta-G solvation = -29.232127 kcal Electronic energy + Delta-G solvation = -32577.691767 eV Core-core repulsion = 28480.773387 eV Total energy + Delta-G solvation = -4096.918380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.64063 -39.09250 -37.71663 -36.38450 -35.96696 -33.78335 -33.59248 -32.62203 -31.14814 -29.92629 -27.34882 -27.23901 -25.24383 -23.86691 -22.91187 -22.08002 -21.74873 -21.47718 -20.81163 -19.51654 -18.70203 -17.45766 -16.51729 -16.32482 -16.07693 -15.85345 -15.20950 -14.90995 -14.61084 -14.45366 -14.10964 -13.91436 -13.71992 -13.47753 -13.38884 -12.94750 -12.59485 -12.45234 -12.32562 -12.21167 -12.01410 -11.78690 -11.75744 -11.46294 -11.35759 -11.30507 -11.10022 -11.04303 -10.92612 -10.86687 -10.82012 -10.41969 -10.29404 -10.15152 -10.12583 -10.11132 -9.94135 -9.71486 -9.51626 -8.86709 -8.51112 -7.75576 -7.02632 -6.07478 -3.87372 2.45696 3.24090 3.31628 3.39951 3.41851 3.90777 4.08403 4.13608 4.28626 4.74595 4.82654 4.83103 4.86674 5.01296 5.11043 5.15058 5.21971 5.27858 5.49687 5.50720 5.55832 5.60586 5.65487 5.68430 5.71064 5.72947 5.80304 5.81307 5.85115 5.93581 5.97820 6.00682 6.04199 6.08365 6.20874 6.23494 6.28844 6.38071 6.42690 6.51367 6.52212 6.53806 6.71663 6.79110 6.89683 6.94481 7.62243 7.81494 8.25772 8.75405 9.05084 9.15599 9.64987 10.26017 10.98383 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.004280 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.354582 B = 6540.683301 C = 7110.730329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.142 3.858 3 H 0.109 0.891 4 C 0.478 3.522 5 O -0.520 6.520 6 N -0.423 5.423 7 C -0.344 4.344 8 H 0.079 0.921 9 C 0.073 3.927 10 N -0.826 5.826 11 Si 0.905 3.095 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.287 1.287 15 C 0.072 3.928 16 C -0.176 4.176 17 C -0.206 4.206 18 N -0.542 5.542 19 C 0.660 3.340 20 O -0.575 6.575 21 O -0.353 6.353 22 C 0.133 3.867 23 C -0.183 4.183 24 C -0.138 4.138 25 C -0.181 4.181 26 C 0.088 3.912 27 C -0.170 4.170 28 C -0.190 4.190 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.263 0.737 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.056 0.944 47 H 0.129 0.871 48 H 0.095 0.905 49 H 0.099 0.901 50 H 0.100 0.900 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.192 1.803 -12.720 14.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.036 3.964 3 H 0.127 0.873 4 C 0.264 3.736 5 O -0.397 6.397 6 N -0.144 5.144 7 C -0.471 4.471 8 H 0.096 0.904 9 C -0.138 4.138 10 N -0.460 5.460 11 Si 0.732 3.268 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.213 1.213 15 C -0.035 4.035 16 C -0.213 4.213 17 C -0.245 4.245 18 N -0.279 5.279 19 C 0.415 3.585 20 O -0.465 6.465 21 O -0.267 6.267 22 C 0.096 3.904 23 C -0.240 4.240 24 C -0.195 4.195 25 C -0.238 4.238 26 C -0.016 4.016 27 C -0.207 4.207 28 C -0.227 4.227 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.147 0.853 48 H 0.113 0.887 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.462 1.686 -12.825 14.041 hybrid contribution 0.469 -0.448 0.616 0.894 sum -4.993 1.238 -12.209 13.248 Atomic orbital electron populations 1.22511 0.93849 1.03563 1.02842 1.20987 0.94444 0.97545 0.83425 0.87299 1.19848 0.84226 0.86117 0.83382 1.90503 1.37306 1.26908 1.84970 1.42702 1.45348 1.21591 1.04779 1.18882 0.94015 1.38186 0.96009 0.90358 1.25171 0.95032 0.96944 0.96634 1.69912 1.03168 1.36556 1.36333 0.86264 0.78379 0.81763 0.80345 1.19610 1.20763 1.21304 1.21786 0.94248 0.92038 0.95402 1.23113 1.01808 0.98426 0.98001 1.23333 0.92313 1.02058 1.06833 1.45764 1.50160 1.11044 1.20954 1.17877 0.77762 0.83463 0.79365 1.90845 1.64593 1.14313 1.76799 1.86397 1.62146 1.42309 1.35895 1.21978 0.89622 0.91065 0.87742 1.22501 0.97199 1.02265 1.02050 1.21818 1.01435 0.99734 0.96509 1.22503 1.00122 0.98990 1.02219 1.21674 0.96986 0.83951 0.98979 1.23171 1.02982 1.02849 0.91735 1.23490 0.92881 1.03499 1.02867 0.92697 0.91082 0.89536 0.92691 0.87734 0.87463 0.89804 0.89730 0.88932 0.92107 0.91670 0.89222 0.91722 0.90569 0.91502 0.89341 0.91559 0.92518 0.85312 0.88679 0.88227 0.88170 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 7.69 37.16 0.29 -2.43 16 2 C 0.14 2.87 2.27 -69.08 -0.16 2.72 16 3 H 0.11 2.34 6.34 -51.93 -0.33 2.01 16 4 C 0.48 11.86 6.27 -10.99 -0.07 11.79 16 5 O -0.52 -14.74 12.31 5.54 0.07 -14.68 16 6 N -0.42 -10.31 2.86 -107.74 -0.31 -10.62 16 7 C -0.34 -9.20 7.81 -14.93 -0.12 -9.32 16 8 H 0.08 2.03 7.43 -52.49 -0.39 1.64 16 9 C 0.07 2.04 4.37 -17.47 -0.08 1.96 16 10 N -0.83 -24.67 11.64 55.50 0.65 -24.02 16 11 Si 0.91 21.81 29.60 -169.99 -5.03 16.78 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.07 1.40 4.31 -67.94 -0.29 1.10 16 16 C -0.18 -3.12 9.81 -26.73 -0.26 -3.38 16 17 C -0.21 -3.37 9.43 -26.73 -0.25 -3.62 16 18 N -0.54 -10.57 2.48 -165.62 -0.41 -10.98 16 19 C 0.66 12.94 7.41 54.06 0.40 13.35 16 20 O -0.58 -12.09 11.22 -19.28 -0.22 -12.30 16 21 O -0.35 -6.01 7.55 -40.31 -0.30 -6.32 16 22 C 0.13 1.86 1.13 -90.62 -0.10 1.76 16 23 C -0.18 -2.72 8.37 37.16 0.31 -2.40 16 24 C -0.14 -1.46 8.85 37.16 0.33 -1.13 16 25 C -0.18 -2.31 8.37 37.16 0.31 -2.00 16 26 C 0.09 1.55 4.92 -67.94 -0.33 1.21 16 27 C -0.17 -2.30 9.13 -26.74 -0.24 -2.55 16 28 C -0.19 -2.61 8.62 -26.74 -0.23 -2.84 16 29 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 30 H 0.07 1.12 5.53 -51.93 -0.29 0.83 16 31 H 0.09 1.32 4.40 -51.93 -0.23 1.09 16 32 H 0.26 7.62 8.32 -40.82 -0.34 7.29 16 33 H 0.11 1.88 6.18 -51.93 -0.32 1.56 16 34 H 0.11 2.13 6.85 -51.93 -0.36 1.77 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.62 5.88 -51.93 -0.31 1.31 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.36 5.88 -51.93 -0.31 1.06 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.13 2.61 7.09 -51.93 -0.37 2.25 16 48 H 0.09 1.30 7.30 -51.93 -0.38 0.92 16 49 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 51 H 0.10 1.33 6.17 -51.93 -0.32 1.01 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -32.96 390.89 -8.38 -41.34 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -8.22 Total: 10.67 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.50 Total: 4.23 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.07 Total: -45.61 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.45 Total: -33.30 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.96 -8.38 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496370571.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.110 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds