Wall clock time and date at job start Tue Mar 31 2020 21:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47301 * 2 1 4 4 C 1.50694 * 109.47156 * 120.00629 * 2 1 3 5 5 O 1.21295 * 120.00497 * 119.99994 * 4 2 1 6 6 N 1.34782 * 120.00085 * 299.99884 * 4 2 1 7 7 C 1.37091 * 120.00101 * 180.02562 * 6 4 2 8 8 H 1.07998 * 120.00182 * 222.86488 * 7 6 4 9 9 C 1.38955 * 120.00540 * 42.86731 * 7 6 4 10 10 N 1.31412 * 119.99436 * 18.67487 * 9 7 6 11 11 Si 1.86791 * 120.00384 * 198.67499 * 9 7 6 12 12 H 1.48497 * 109.47303 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46842 * 119.99885 * 11 9 7 14 14 H 1.48495 * 109.47401 * 239.99741 * 11 9 7 15 15 C 1.46496 * 119.99827 * 359.97438 * 6 4 2 16 16 C 1.52996 * 117.50143 * 188.41768 * 15 6 4 17 17 C 1.52996 * 117.49911 * 119.78889 * 15 6 4 18 18 N 1.46509 * 109.46757 * 240.00231 * 2 1 3 19 19 C 1.34779 * 119.99571 * 120.00233 * 18 2 1 20 20 O 1.21509 * 120.00211 * 354.73430 * 19 18 2 21 21 O 1.34633 * 119.99879 * 174.73762 * 19 18 2 22 22 C 1.45200 * 117.00408 * 180.02562 * 21 19 18 23 23 C 1.53003 * 109.46950 * 59.99571 * 22 21 19 24 24 C 1.52996 * 109.47498 * 180.02562 * 22 21 19 25 25 C 1.52997 * 109.46762 * 299.99993 * 22 21 19 26 26 C 1.46495 * 120.00067 * 300.00182 * 18 2 1 27 27 C 1.52994 * 117.49808 * 135.46696 * 26 18 2 28 28 C 1.52995 * 117.50024 * 66.84419 * 26 18 2 29 29 H 1.09002 * 109.47279 * 59.99505 * 1 2 3 30 30 H 1.09002 * 109.47577 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46974 * 299.99607 * 1 2 3 32 32 H 0.97000 * 119.99674 * 184.89767 * 10 9 7 33 33 H 1.09005 * 115.54879 * 334.11927 * 15 6 4 34 34 H 1.09000 * 117.49908 * 359.97438 * 16 15 6 35 35 H 1.08997 * 117.50315 * 145.02270 * 16 15 6 36 36 H 1.09002 * 117.49891 * 214.97504 * 17 15 6 37 37 H 1.08991 * 117.50149 * 0.02562 * 17 15 6 38 38 H 1.09000 * 109.46817 * 60.00420 * 23 22 21 39 39 H 1.09000 * 109.46837 * 180.02562 * 23 22 21 40 40 H 1.08999 * 109.47199 * 300.00483 * 23 22 21 41 41 H 1.08997 * 109.47326 * 59.99395 * 24 22 21 42 42 H 1.08995 * 109.46958 * 180.02562 * 24 22 21 43 43 H 1.09000 * 109.46933 * 299.99987 * 24 22 21 44 44 H 1.09001 * 109.47362 * 60.00146 * 25 22 21 45 45 H 1.09000 * 109.47175 * 179.97438 * 25 22 21 46 46 H 1.09007 * 109.47420 * 299.99860 * 25 22 21 47 47 H 1.09004 * 115.54838 * 281.17205 * 26 18 2 48 48 H 1.09000 * 117.49922 * 359.97438 * 27 26 18 49 49 H 1.09005 * 117.50195 * 145.01591 * 27 26 18 50 50 H 1.09004 * 117.49986 * 214.97786 * 28 26 18 51 51 H 1.09002 * 117.50077 * 359.97438 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7067 -0.2502 2.4545 7 6 2.1641 -0.8962 3.5738 8 1 1.5017 -1.0614 4.4106 9 6 3.4801 -1.3386 3.6318 10 7 4.3776 -0.8397 2.8117 11 14 3.9733 -2.6424 4.8752 12 1 2.7863 -3.0379 5.6750 13 1 4.5069 -3.8303 4.1615 14 1 5.0188 -2.0959 5.7771 15 6 0.8650 0.9412 2.5891 16 6 0.6922 1.5296 3.9908 17 6 -0.4673 0.7855 3.3250 18 7 2.0182 -0.6906 -1.1963 19 6 2.7931 -0.0355 -2.0834 20 8 3.0081 1.1520 -1.9418 21 8 3.3289 -0.6969 -3.1265 22 6 4.1533 0.0720 -4.0416 23 6 5.3388 0.6694 -3.2807 24 6 4.6693 -0.8423 -5.1544 25 6 3.3200 1.1996 -4.6539 26 6 1.6643 -2.0931 -1.4282 27 6 1.2237 -2.4864 -2.8395 28 6 0.1949 -2.4137 -1.7095 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 5.2790 -1.1980 2.8031 33 1 0.8987 1.6378 1.7513 34 1 1.2044 1.0299 4.8130 35 1 0.6122 2.6133 4.0754 36 1 -1.3099 1.3799 2.9717 37 1 -0.7173 -0.2032 3.7095 38 1 5.9324 -0.1339 -2.8444 39 1 5.9574 1.2470 -3.9676 40 1 4.9708 1.3209 -2.4881 41 1 3.8246 -1.2675 -5.6963 42 1 5.2885 -0.2651 -5.8410 43 1 5.2629 -1.6459 -4.7185 44 1 2.9520 1.8512 -3.8614 45 1 3.9389 1.7772 -5.3405 46 1 2.4754 0.7741 -5.1960 47 1 2.2385 -2.8234 -0.8580 48 1 1.1968 -1.7016 -3.5954 49 1 1.5082 -3.4756 -3.1983 50 1 -0.1974 -3.3550 -1.3247 51 1 -0.5085 -1.5811 -1.7215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496370571.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:22 Heat of formation + Delta-G solvation = -48.767509 kcal Electronic energy + Delta-G solvation = -32578.538885 eV Core-core repulsion = 28480.773387 eV Total energy + Delta-G solvation = -4097.765498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.05620 -40.71440 -39.11410 -37.74612 -37.64135 -35.18650 -34.97552 -34.47185 -32.92845 -31.48512 -28.36801 -28.26796 -27.17993 -25.37410 -24.28778 -23.29292 -23.13974 -22.89839 -22.34725 -21.09986 -20.17066 -18.85534 -18.25029 -17.83448 -17.67390 -17.30993 -16.67744 -16.48698 -16.15799 -15.84125 -15.59861 -15.37859 -15.24193 -15.00560 -14.58629 -14.41205 -14.11645 -13.78622 -13.72699 -13.31420 -13.22974 -13.10742 -12.94156 -12.84942 -12.82990 -12.78494 -12.66018 -12.49892 -12.37405 -12.27427 -12.22147 -12.05582 -12.02607 -11.64008 -11.51790 -11.37813 -11.32647 -11.18557 -10.87494 -10.75396 -10.23852 -9.50243 -8.95916 -8.17073 -5.99614 1.08961 1.35058 1.40743 1.49514 1.76875 2.24799 2.38484 2.67446 2.92012 3.05371 3.13928 3.36927 3.77680 3.81780 3.87159 3.92488 3.97093 4.01987 4.06235 4.09752 4.18528 4.26420 4.31843 4.45866 4.53704 4.61642 4.70403 4.71660 4.74876 4.76289 4.83749 4.88097 4.89599 4.92544 4.93153 5.04161 5.10941 5.15921 5.21332 5.26216 5.28615 5.29369 5.34482 5.43648 5.48057 5.50913 5.55753 6.18029 6.37290 7.02143 7.18632 7.32397 7.68347 8.33863 8.87044 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.004280 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.354582 B = 6540.683301 C = 7110.730329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.151 3.849 3 H 0.091 0.909 4 C 0.466 3.534 5 O -0.568 6.568 6 N -0.438 5.438 7 C -0.344 4.344 8 H 0.083 0.917 9 C 0.020 3.980 10 N -0.871 5.871 11 Si 0.964 3.036 12 H -0.253 1.253 13 H -0.297 1.297 14 H -0.280 1.280 15 C 0.039 3.961 16 C -0.177 4.177 17 C -0.169 4.169 18 N -0.545 5.545 19 C 0.653 3.347 20 O -0.597 6.597 21 O -0.355 6.355 22 C 0.119 3.881 23 C -0.180 4.180 24 C -0.130 4.130 25 C -0.174 4.174 26 C 0.047 3.953 27 C -0.142 4.142 28 C -0.166 4.166 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.254 0.746 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.093 0.907 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.118 0.882 50 H 0.114 0.886 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 2.138 -14.349 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 H 0.109 0.891 4 C 0.253 3.747 5 O -0.448 6.448 6 N -0.159 5.159 7 C -0.471 4.471 8 H 0.101 0.899 9 C -0.186 4.186 10 N -0.507 5.507 11 Si 0.790 3.210 12 H -0.177 1.177 13 H -0.223 1.223 14 H -0.206 1.206 15 C -0.066 4.066 16 C -0.215 4.215 17 C -0.208 4.208 18 N -0.283 5.283 19 C 0.408 3.592 20 O -0.489 6.489 21 O -0.269 6.269 22 C 0.082 3.918 23 C -0.238 4.238 24 C -0.187 4.187 25 C -0.231 4.231 26 C -0.057 4.057 27 C -0.179 4.179 28 C -0.204 4.204 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.137 0.863 34 H 0.099 0.901 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.136 0.864 50 H 0.133 0.867 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.051 2.033 -14.432 16.650 hybrid contribution 1.262 -0.509 1.122 1.763 sum -6.789 1.524 -13.310 15.019 Atomic orbital electron populations 1.22437 0.90129 1.04276 1.04509 1.20825 0.97124 0.95657 0.81936 0.89132 1.20692 0.83363 0.85843 0.84808 1.90468 1.39245 1.29107 1.85986 1.42908 1.45754 1.23044 1.04189 1.19151 0.93718 1.37700 0.96574 0.89922 1.26000 0.95361 0.98898 0.98312 1.70050 1.03112 1.38310 1.39223 0.85349 0.78606 0.78761 0.78332 1.17685 1.22347 1.20573 1.22050 0.96127 0.91282 0.97168 1.23171 1.02368 1.00185 0.95738 1.23352 0.91940 1.01801 1.03689 1.45861 1.50155 1.11777 1.20474 1.18104 0.77638 0.83387 0.80034 1.90830 1.65206 1.15351 1.77561 1.86408 1.62182 1.42736 1.35556 1.22464 0.89014 0.92415 0.87870 1.22468 0.98000 1.01465 1.01830 1.21844 1.02163 0.99252 0.95475 1.22425 1.00799 0.98201 1.01641 1.21546 0.99764 0.82249 1.02117 1.23225 1.01015 1.03645 0.90007 1.23579 0.90884 1.04349 1.01585 0.90213 0.90751 0.88558 0.93726 0.86299 0.90093 0.86775 0.85378 0.90081 0.93606 0.88432 0.93010 0.90342 0.87660 0.92192 0.92402 0.88845 0.91173 0.89381 0.88230 0.86355 0.86749 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.72 7.69 71.98 0.55 -4.17 16 2 C 0.15 6.25 2.27 44.24 0.10 6.35 16 3 H 0.09 4.05 6.34 -2.39 -0.02 4.03 16 4 C 0.47 24.00 6.27 87.65 0.55 24.54 16 5 O -0.57 -34.12 12.31 -3.08 -0.04 -34.16 16 6 N -0.44 -21.82 2.86 -613.15 -1.75 -23.57 16 7 C -0.34 -18.84 7.81 84.04 0.66 -18.19 16 8 H 0.08 4.33 7.43 -2.91 -0.02 4.31 16 9 C 0.02 1.15 4.37 84.93 0.37 1.52 16 10 N -0.87 -54.91 11.64 21.66 0.25 -54.65 16 11 Si 0.96 46.40 29.60 68.60 2.03 48.43 16 12 H -0.25 -11.27 7.11 99.48 0.71 -10.56 16 13 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 C 0.04 1.48 4.31 44.99 0.19 1.67 16 16 C -0.18 -6.00 9.81 30.60 0.30 -5.70 16 17 C -0.17 -5.03 9.43 30.60 0.29 -4.74 16 18 N -0.55 -21.88 2.48 -908.33 -2.25 -24.12 16 19 C 0.65 26.42 7.41 129.79 0.96 27.38 16 20 O -0.60 -26.24 11.22 19.81 0.22 -26.01 16 21 O -0.35 -12.19 7.55 -55.42 -0.42 -12.61 16 22 C 0.12 3.23 1.13 -10.79 -0.01 3.21 16 23 C -0.18 -5.46 8.37 71.98 0.60 -4.86 16 24 C -0.13 -2.44 8.85 71.98 0.64 -1.81 16 25 C -0.17 -4.15 8.37 71.98 0.60 -3.55 16 26 C 0.05 1.68 4.92 44.99 0.22 1.90 16 27 C -0.14 -3.61 9.13 30.59 0.28 -3.33 16 28 C -0.17 -4.27 8.62 30.59 0.26 -4.01 16 29 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 30 H 0.07 2.20 5.53 -2.39 -0.01 2.19 16 31 H 0.10 2.71 4.40 -2.39 -0.01 2.69 16 32 H 0.25 15.69 8.32 -92.71 -0.77 14.92 16 33 H 0.12 4.16 6.18 -2.38 -0.01 4.14 16 34 H 0.08 3.19 6.85 -2.39 -0.02 3.18 16 35 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.05 1.97 5.88 -2.39 -0.01 1.96 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.06 1.77 5.88 -2.39 -0.01 1.76 16 45 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.09 3.84 7.09 -2.39 -0.02 3.82 16 48 H 0.10 2.49 7.30 -2.39 -0.02 2.47 16 49 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 50 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 51 H 0.11 2.64 6.17 -2.39 -0.01 2.62 16 Total: -1.00 -78.72 390.89 5.55 -73.18 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: 0.93 Total: 37.29 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 6.57 Total: 16.24 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -3.75 Total: -102.35 kcal Atomic # 8 Polarization: -72.55 SS G_CDS: -0.23 Total: -72.78 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -78.72 5.55 -73.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496370571.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.410 kcal (2) G-P(sol) polarization free energy of solvation -78.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds