Wall clock time and date at job start Tue Mar 31 2020 21:58:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08992 * 109.47301 * 2 1
4 4 C 1.50694 * 109.47156 * 120.00629 * 2 1 3
5 5 O 1.21295 * 120.00497 * 119.99994 * 4 2 1
6 6 N 1.34782 * 120.00085 * 299.99884 * 4 2 1
7 7 C 1.37091 * 120.00101 * 180.02562 * 6 4 2
8 8 H 1.07998 * 120.00182 * 222.86488 * 7 6 4
9 9 C 1.38955 * 120.00540 * 42.86731 * 7 6 4
10 10 N 1.31412 * 119.99436 * 18.67487 * 9 7 6
11 11 Si 1.86791 * 120.00384 * 198.67499 * 9 7 6
12 12 H 1.48497 * 109.47303 * 0.02562 * 11 9 7
13 13 H 1.48504 * 109.46842 * 119.99885 * 11 9 7
14 14 H 1.48495 * 109.47401 * 239.99741 * 11 9 7
15 15 C 1.46496 * 119.99827 * 359.97438 * 6 4 2
16 16 C 1.52996 * 117.50143 * 188.41768 * 15 6 4
17 17 C 1.52996 * 117.49911 * 119.78889 * 15 6 4
18 18 N 1.46509 * 109.46757 * 240.00231 * 2 1 3
19 19 C 1.34779 * 119.99571 * 120.00233 * 18 2 1
20 20 O 1.21509 * 120.00211 * 354.73430 * 19 18 2
21 21 O 1.34633 * 119.99879 * 174.73762 * 19 18 2
22 22 C 1.45200 * 117.00408 * 180.02562 * 21 19 18
23 23 C 1.53003 * 109.46950 * 59.99571 * 22 21 19
24 24 C 1.52996 * 109.47498 * 180.02562 * 22 21 19
25 25 C 1.52997 * 109.46762 * 299.99993 * 22 21 19
26 26 C 1.46495 * 120.00067 * 300.00182 * 18 2 1
27 27 C 1.52994 * 117.49808 * 135.46696 * 26 18 2
28 28 C 1.52995 * 117.50024 * 66.84419 * 26 18 2
29 29 H 1.09002 * 109.47279 * 59.99505 * 1 2 3
30 30 H 1.09002 * 109.47577 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.46974 * 299.99607 * 1 2 3
32 32 H 0.97000 * 119.99674 * 184.89767 * 10 9 7
33 33 H 1.09005 * 115.54879 * 334.11927 * 15 6 4
34 34 H 1.09000 * 117.49908 * 359.97438 * 16 15 6
35 35 H 1.08997 * 117.50315 * 145.02270 * 16 15 6
36 36 H 1.09002 * 117.49891 * 214.97504 * 17 15 6
37 37 H 1.08991 * 117.50149 * 0.02562 * 17 15 6
38 38 H 1.09000 * 109.46817 * 60.00420 * 23 22 21
39 39 H 1.09000 * 109.46837 * 180.02562 * 23 22 21
40 40 H 1.08999 * 109.47199 * 300.00483 * 23 22 21
41 41 H 1.08997 * 109.47326 * 59.99395 * 24 22 21
42 42 H 1.08995 * 109.46958 * 180.02562 * 24 22 21
43 43 H 1.09000 * 109.46933 * 299.99987 * 24 22 21
44 44 H 1.09001 * 109.47362 * 60.00146 * 25 22 21
45 45 H 1.09000 * 109.47175 * 179.97438 * 25 22 21
46 46 H 1.09007 * 109.47420 * 299.99860 * 25 22 21
47 47 H 1.09004 * 115.54838 * 281.17205 * 26 18 2
48 48 H 1.09000 * 117.49922 * 359.97438 * 27 26 18
49 49 H 1.09005 * 117.50195 * 145.01591 * 27 26 18
50 50 H 1.09004 * 117.49986 * 214.97786 * 28 26 18
51 51 H 1.09002 * 117.50077 * 359.97438 * 28 26 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7105 1.2303
5 8 2.7296 -1.6967 1.1190
6 7 1.7067 -0.2502 2.4545
7 6 2.1641 -0.8962 3.5738
8 1 1.5017 -1.0614 4.4106
9 6 3.4801 -1.3386 3.6318
10 7 4.3776 -0.8397 2.8117
11 14 3.9733 -2.6424 4.8752
12 1 2.7863 -3.0379 5.6750
13 1 4.5069 -3.8303 4.1615
14 1 5.0188 -2.0959 5.7771
15 6 0.8650 0.9412 2.5891
16 6 0.6922 1.5296 3.9908
17 6 -0.4673 0.7855 3.3250
18 7 2.0182 -0.6906 -1.1963
19 6 2.7931 -0.0355 -2.0834
20 8 3.0081 1.1520 -1.9418
21 8 3.3289 -0.6969 -3.1265
22 6 4.1533 0.0720 -4.0416
23 6 5.3388 0.6694 -3.2807
24 6 4.6693 -0.8423 -5.1544
25 6 3.3200 1.1996 -4.6539
26 6 1.6643 -2.0931 -1.4282
27 6 1.2237 -2.4864 -2.8395
28 6 0.1949 -2.4137 -1.7095
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 5.2790 -1.1980 2.8031
33 1 0.8987 1.6378 1.7513
34 1 1.2044 1.0299 4.8130
35 1 0.6122 2.6133 4.0754
36 1 -1.3099 1.3799 2.9717
37 1 -0.7173 -0.2032 3.7095
38 1 5.9324 -0.1339 -2.8444
39 1 5.9574 1.2470 -3.9676
40 1 4.9708 1.3209 -2.4881
41 1 3.8246 -1.2675 -5.6963
42 1 5.2885 -0.2651 -5.8410
43 1 5.2629 -1.6459 -4.7185
44 1 2.9520 1.8512 -3.8614
45 1 3.9389 1.7772 -5.3405
46 1 2.4754 0.7741 -5.1960
47 1 2.2385 -2.8234 -0.8580
48 1 1.1968 -1.7016 -3.5954
49 1 1.5082 -3.4756 -3.1983
50 1 -0.1974 -3.3550 -1.3247
51 1 -0.5085 -1.5811 -1.7215
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000496370571.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:58:22
Heat of formation + Delta-G solvation = -48.767509 kcal
Electronic energy + Delta-G solvation = -32578.538885 eV
Core-core repulsion = 28480.773387 eV
Total energy + Delta-G solvation = -4097.765498 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.05620 -40.71440 -39.11410 -37.74612 -37.64135 -35.18650 -34.97552 -34.47185
-32.92845 -31.48512 -28.36801 -28.26796 -27.17993 -25.37410 -24.28778 -23.29292
-23.13974 -22.89839 -22.34725 -21.09986 -20.17066 -18.85534 -18.25029 -17.83448
-17.67390 -17.30993 -16.67744 -16.48698 -16.15799 -15.84125 -15.59861 -15.37859
-15.24193 -15.00560 -14.58629 -14.41205 -14.11645 -13.78622 -13.72699 -13.31420
-13.22974 -13.10742 -12.94156 -12.84942 -12.82990 -12.78494 -12.66018 -12.49892
-12.37405 -12.27427 -12.22147 -12.05582 -12.02607 -11.64008 -11.51790 -11.37813
-11.32647 -11.18557 -10.87494 -10.75396 -10.23852 -9.50243 -8.95916 -8.17073
-5.99614 1.08961 1.35058 1.40743 1.49514 1.76875 2.24799 2.38484
2.67446 2.92012 3.05371 3.13928 3.36927 3.77680 3.81780 3.87159
3.92488 3.97093 4.01987 4.06235 4.09752 4.18528 4.26420 4.31843
4.45866 4.53704 4.61642 4.70403 4.71660 4.74876 4.76289 4.83749
4.88097 4.89599 4.92544 4.93153 5.04161 5.10941 5.15921 5.21332
5.26216 5.28615 5.29369 5.34482 5.43648 5.48057 5.50913 5.55753
6.18029 6.37290 7.02143 7.18632 7.32397 7.68347 8.33863 8.87044
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.012462 B = 0.004280 C = 0.003937
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2246.354582 B = 6540.683301 C = 7110.730329
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.151 3.849
3 H 0.091 0.909
4 C 0.466 3.534
5 O -0.568 6.568
6 N -0.438 5.438
7 C -0.344 4.344
8 H 0.083 0.917
9 C 0.020 3.980
10 N -0.871 5.871
11 Si 0.964 3.036
12 H -0.253 1.253
13 H -0.297 1.297
14 H -0.280 1.280
15 C 0.039 3.961
16 C -0.177 4.177
17 C -0.169 4.169
18 N -0.545 5.545
19 C 0.653 3.347
20 O -0.597 6.597
21 O -0.355 6.355
22 C 0.119 3.881
23 C -0.180 4.180
24 C -0.130 4.130
25 C -0.174 4.174
26 C 0.047 3.953
27 C -0.142 4.142
28 C -0.166 4.166
29 H 0.079 0.921
30 H 0.074 0.926
31 H 0.096 0.904
32 H 0.254 0.746
33 H 0.120 0.880
34 H 0.081 0.919
35 H 0.114 0.886
36 H 0.128 0.872
37 H 0.081 0.919
38 H 0.045 0.955
39 H 0.097 0.903
40 H 0.051 0.949
41 H 0.078 0.922
42 H 0.105 0.895
43 H 0.059 0.941
44 H 0.057 0.943
45 H 0.093 0.907
46 H 0.069 0.931
47 H 0.088 0.912
48 H 0.099 0.901
49 H 0.118 0.882
50 H 0.114 0.886
51 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.736 2.138 -14.349 16.935
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.045 3.955
3 H 0.109 0.891
4 C 0.253 3.747
5 O -0.448 6.448
6 N -0.159 5.159
7 C -0.471 4.471
8 H 0.101 0.899
9 C -0.186 4.186
10 N -0.507 5.507
11 Si 0.790 3.210
12 H -0.177 1.177
13 H -0.223 1.223
14 H -0.206 1.206
15 C -0.066 4.066
16 C -0.215 4.215
17 C -0.208 4.208
18 N -0.283 5.283
19 C 0.408 3.592
20 O -0.489 6.489
21 O -0.269 6.269
22 C 0.082 3.918
23 C -0.238 4.238
24 C -0.187 4.187
25 C -0.231 4.231
26 C -0.057 4.057
27 C -0.179 4.179
28 C -0.204 4.204
29 H 0.098 0.902
30 H 0.092 0.908
31 H 0.114 0.886
32 H 0.063 0.937
33 H 0.137 0.863
34 H 0.099 0.901
35 H 0.132 0.868
36 H 0.146 0.854
37 H 0.099 0.901
38 H 0.064 0.936
39 H 0.116 0.884
40 H 0.070 0.930
41 H 0.097 0.903
42 H 0.123 0.877
43 H 0.078 0.922
44 H 0.076 0.924
45 H 0.112 0.888
46 H 0.088 0.912
47 H 0.106 0.894
48 H 0.118 0.882
49 H 0.136 0.864
50 H 0.133 0.867
51 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -8.051 2.033 -14.432 16.650
hybrid contribution 1.262 -0.509 1.122 1.763
sum -6.789 1.524 -13.310 15.019
Atomic orbital electron populations
1.22437 0.90129 1.04276 1.04509 1.20825 0.97124 0.95657 0.81936
0.89132 1.20692 0.83363 0.85843 0.84808 1.90468 1.39245 1.29107
1.85986 1.42908 1.45754 1.23044 1.04189 1.19151 0.93718 1.37700
0.96574 0.89922 1.26000 0.95361 0.98898 0.98312 1.70050 1.03112
1.38310 1.39223 0.85349 0.78606 0.78761 0.78332 1.17685 1.22347
1.20573 1.22050 0.96127 0.91282 0.97168 1.23171 1.02368 1.00185
0.95738 1.23352 0.91940 1.01801 1.03689 1.45861 1.50155 1.11777
1.20474 1.18104 0.77638 0.83387 0.80034 1.90830 1.65206 1.15351
1.77561 1.86408 1.62182 1.42736 1.35556 1.22464 0.89014 0.92415
0.87870 1.22468 0.98000 1.01465 1.01830 1.21844 1.02163 0.99252
0.95475 1.22425 1.00799 0.98201 1.01641 1.21546 0.99764 0.82249
1.02117 1.23225 1.01015 1.03645 0.90007 1.23579 0.90884 1.04349
1.01585 0.90213 0.90751 0.88558 0.93726 0.86299 0.90093 0.86775
0.85378 0.90081 0.93606 0.88432 0.93010 0.90342 0.87660 0.92192
0.92402 0.88845 0.91173 0.89381 0.88230 0.86355 0.86749 0.86912
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.72 7.69 71.98 0.55 -4.17 16
2 C 0.15 6.25 2.27 44.24 0.10 6.35 16
3 H 0.09 4.05 6.34 -2.39 -0.02 4.03 16
4 C 0.47 24.00 6.27 87.65 0.55 24.54 16
5 O -0.57 -34.12 12.31 -3.08 -0.04 -34.16 16
6 N -0.44 -21.82 2.86 -613.15 -1.75 -23.57 16
7 C -0.34 -18.84 7.81 84.04 0.66 -18.19 16
8 H 0.08 4.33 7.43 -2.91 -0.02 4.31 16
9 C 0.02 1.15 4.37 84.93 0.37 1.52 16
10 N -0.87 -54.91 11.64 21.66 0.25 -54.65 16
11 Si 0.96 46.40 29.60 68.60 2.03 48.43 16
12 H -0.25 -11.27 7.11 99.48 0.71 -10.56 16
13 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16
14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
15 C 0.04 1.48 4.31 44.99 0.19 1.67 16
16 C -0.18 -6.00 9.81 30.60 0.30 -5.70 16
17 C -0.17 -5.03 9.43 30.60 0.29 -4.74 16
18 N -0.55 -21.88 2.48 -908.33 -2.25 -24.12 16
19 C 0.65 26.42 7.41 129.79 0.96 27.38 16
20 O -0.60 -26.24 11.22 19.81 0.22 -26.01 16
21 O -0.35 -12.19 7.55 -55.42 -0.42 -12.61 16
22 C 0.12 3.23 1.13 -10.79 -0.01 3.21 16
23 C -0.18 -5.46 8.37 71.98 0.60 -4.86 16
24 C -0.13 -2.44 8.85 71.98 0.64 -1.81 16
25 C -0.17 -4.15 8.37 71.98 0.60 -3.55 16
26 C 0.05 1.68 4.92 44.99 0.22 1.90 16
27 C -0.14 -3.61 9.13 30.59 0.28 -3.33 16
28 C -0.17 -4.27 8.62 30.59 0.26 -4.01 16
29 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16
30 H 0.07 2.20 5.53 -2.39 -0.01 2.19 16
31 H 0.10 2.71 4.40 -2.39 -0.01 2.69 16
32 H 0.25 15.69 8.32 -92.71 -0.77 14.92 16
33 H 0.12 4.16 6.18 -2.38 -0.01 4.14 16
34 H 0.08 3.19 6.85 -2.39 -0.02 3.18 16
35 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16
36 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16
37 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16
38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16
39 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16
40 H 0.05 1.97 5.88 -2.39 -0.01 1.96 16
41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
44 H 0.06 1.77 5.88 -2.39 -0.01 1.76 16
45 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16
46 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16
47 H 0.09 3.84 7.09 -2.39 -0.02 3.82 16
48 H 0.10 2.49 7.30 -2.39 -0.02 2.47 16
49 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16
50 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16
51 H 0.11 2.64 6.17 -2.39 -0.01 2.62 16
Total: -1.00 -78.72 390.89 5.55 -73.18
By element:
Atomic # 1 Polarization: 36.36 SS G_CDS: 0.93 Total: 37.29 kcal
Atomic # 6 Polarization: 9.67 SS G_CDS: 6.57 Total: 16.24 kcal
Atomic # 7 Polarization: -98.60 SS G_CDS: -3.75 Total: -102.35 kcal
Atomic # 8 Polarization: -72.55 SS G_CDS: -0.23 Total: -72.78 kcal
Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal
Total: -78.72 5.55 -73.18 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000496370571.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.410 kcal
(2) G-P(sol) polarization free energy of solvation -78.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.314 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.177 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.768 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds