Wall clock time and date at job start Tue Mar 31 2020 21:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46759 * 2 1 4 4 C 1.52997 * 109.47361 * 119.99912 * 2 1 3 5 5 C 1.50701 * 109.47165 * 185.00605 * 4 2 1 6 6 O 1.21285 * 120.00221 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00083 * 180.02562 * 5 4 2 8 8 C 1.47013 * 125.64773 * 359.95440 * 7 5 4 9 9 C 1.54326 * 107.27435 * 181.09631 * 8 7 5 10 10 C 1.55157 * 102.93823 * 22.19004 * 9 8 7 11 11 O 1.42905 * 111.00488 * 82.57478 * 10 9 8 12 12 C 1.50703 * 111.03921 * 206.41183 * 10 9 8 13 13 H 1.07992 * 120.00336 * 115.39535 * 12 10 9 14 14 C 1.37879 * 119.99709 * 295.40038 * 12 10 9 15 15 N 1.31519 * 120.00283 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 120.00008 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46760 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47165 * 119.99688 * 16 14 12 19 19 H 1.48501 * 109.46700 * 239.99822 * 16 14 12 20 20 C 1.47428 * 125.64821 * 179.97438 * 7 5 4 21 21 N 1.46497 * 109.47433 * 240.00262 * 2 1 3 22 22 C 1.34775 * 120.00126 * 84.99438 * 21 2 1 23 23 O 1.21281 * 120.00309 * 359.97438 * 22 21 2 24 24 C 1.50701 * 120.00142 * 180.02562 * 22 21 2 25 25 C 1.54271 * 110.03047 * 297.16735 * 24 22 21 26 26 C 1.54891 * 104.19661 * 217.10666 * 25 24 22 27 27 C 1.54893 * 102.74838 * 37.93970 * 26 25 24 28 28 C 1.53875 * 110.03629 * 180.02562 * 24 22 21 29 29 H 1.08994 * 109.47310 * 60.00029 * 1 2 3 30 30 H 1.09003 * 109.46574 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46886 * 299.99588 * 1 2 3 32 32 H 1.08993 * 109.47127 * 64.99972 * 4 2 1 33 33 H 1.09003 * 109.47072 * 304.99964 * 4 2 1 34 34 H 1.09002 * 109.88115 * 300.51130 * 8 7 5 35 35 H 1.09003 * 109.88368 * 61.52491 * 8 7 5 36 36 H 1.09000 * 110.72133 * 263.83108 * 9 8 7 37 37 H 1.08995 * 110.72116 * 140.55087 * 9 8 7 38 38 H 0.96705 * 113.99788 * 67.80231 * 11 10 9 39 39 H 0.96996 * 119.99879 * 180.02562 * 15 14 12 40 40 H 1.09003 * 110.36539 * 36.99854 * 20 7 5 41 41 H 1.08994 * 110.36519 * 274.67791 * 20 7 5 42 42 H 0.97000 * 119.99845 * 265.00065 * 21 2 1 43 43 H 1.09000 * 110.01924 * 58.60280 * 24 22 21 44 44 H 1.09003 * 110.48076 * 335.78058 * 25 24 22 45 45 H 1.09001 * 110.49254 * 98.42395 * 25 24 22 46 46 H 1.09001 * 110.75350 * 279.62575 * 26 25 24 47 47 H 1.09002 * 110.91665 * 156.32698 * 26 25 24 48 48 H 1.08997 * 110.48192 * 203.38327 * 27 26 25 49 49 H 1.08996 * 110.48579 * 80.73490 * 27 26 25 50 50 H 1.08995 * 110.03441 * 238.56769 * 28 24 22 51 51 H 1.08998 * 110.02871 * 359.94613 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6147 1.3127 6 8 4.1451 -0.0209 0.4441 7 7 4.2151 -1.1803 2.3343 8 6 3.6126 -1.9259 3.4489 9 6 4.7610 -2.3593 4.3842 10 6 5.8880 -1.3494 4.0415 11 8 5.7060 -0.1199 4.7468 12 6 7.2461 -1.9368 4.3275 13 1 7.9398 -2.1123 3.5186 14 6 7.6030 -2.2501 5.6219 15 7 6.7585 -2.0360 6.6071 16 14 9.2862 -2.9788 5.9763 17 1 10.0417 -3.1204 4.7057 18 1 10.0296 -2.0824 6.8976 19 1 9.1248 -4.3135 6.6071 20 6 5.6775 -1.1533 2.5193 21 7 2.0184 -0.6905 -1.1962 22 6 2.1471 -0.0182 -2.3571 23 8 1.8581 1.1584 -2.4118 24 6 2.6490 -0.7287 -3.5877 25 6 4.0905 -1.2281 -3.3586 26 6 4.7844 -1.0272 -4.7287 27 6 4.1800 0.3098 -5.2252 28 6 2.7065 0.2492 -4.7744 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7518 -1.7714 1.2056 33 1 1.6055 -0.2617 2.1370 34 1 2.9158 -1.2854 3.9896 35 1 3.0902 -2.8036 3.0683 36 1 5.0760 -3.3788 4.1615 37 1 4.4639 -2.2658 5.4287 38 1 5.8278 -0.1934 5.7033 39 1 7.0098 -2.2561 7.5177 40 1 6.0824 -0.1926 2.2010 41 1 6.1452 -1.9659 1.9635 42 1 2.2491 -1.6317 -1.1526 43 1 1.9958 -1.5680 -3.8264 44 1 4.5831 -0.6318 -2.5905 45 1 4.0897 -2.2825 -3.0823 46 1 4.5356 -1.8404 -5.4106 47 1 5.8645 -0.9421 -4.6092 48 1 4.2445 0.3776 -6.3111 49 1 4.6871 1.1542 -4.7585 50 1 2.0817 -0.1157 -5.5896 51 1 2.3705 1.2374 -4.4604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:56 Heat of formation + Delta-G solvation = -144.561040 kcal Electronic energy + Delta-G solvation = -30653.004014 eV Core-core repulsion = 26551.084597 eV Total energy + Delta-G solvation = -4101.919417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.32601 -39.44363 -37.65768 -37.02196 -35.47937 -34.32980 -32.22906 -31.87667 -30.05643 -29.05254 -28.72173 -28.57059 -27.62859 -25.03184 -22.98859 -22.24606 -21.00299 -20.70024 -19.85634 -19.55931 -18.75446 -17.43473 -17.28192 -16.65981 -16.35951 -15.80458 -15.19381 -15.09607 -15.01696 -14.85963 -14.40313 -14.13882 -13.75244 -13.61424 -13.42682 -13.21803 -13.12258 -12.51630 -12.45180 -12.20749 -12.04906 -11.83238 -11.72750 -11.64521 -11.43472 -11.38959 -11.35264 -11.22238 -11.19723 -11.04230 -10.93314 -10.85406 -10.65480 -10.61721 -10.51089 -10.09653 -9.62013 -9.48567 -9.37246 -8.97988 -8.74094 -8.27098 -8.02059 -6.34952 -4.43097 2.76242 3.03186 3.14578 3.23797 3.24156 3.28147 3.49407 4.21767 4.36547 4.48596 4.61537 4.69662 4.76665 4.93797 5.07941 5.13425 5.20912 5.31085 5.33989 5.38896 5.41492 5.49107 5.51169 5.54631 5.55480 5.60328 5.69585 5.74638 5.80579 5.82129 5.93245 5.96013 6.00661 6.08073 6.13612 6.22950 6.24139 6.25007 6.39168 6.57713 6.60648 6.83103 6.92149 7.25255 7.28166 7.57306 7.67933 7.94069 8.10556 8.34154 8.58609 8.63012 9.25936 9.38024 10.72419 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.002687 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.742616 B =10416.885000 C =11720.748916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 H 0.095 0.905 4 C -0.147 4.147 5 C 0.518 3.482 6 O -0.544 6.544 7 N -0.607 5.607 8 C 0.100 3.900 9 C -0.137 4.137 10 C 0.248 3.752 11 O -0.584 6.584 12 C -0.535 4.535 13 H 0.065 0.935 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.903 3.097 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.282 1.282 20 C 0.121 3.879 21 N -0.712 5.712 22 C 0.527 3.473 23 O -0.543 6.543 24 C -0.112 4.112 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.118 4.118 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.384 0.616 39 H 0.268 0.732 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.396 0.604 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 -2.957 -14.342 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 H 0.113 0.887 4 C -0.187 4.187 5 C 0.306 3.694 6 O -0.422 6.422 7 N -0.340 5.340 8 C -0.023 4.023 9 C -0.176 4.176 10 C 0.207 3.793 11 O -0.393 6.393 12 C -0.574 4.574 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.536 5.536 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.001 4.001 21 N -0.362 5.362 22 C 0.313 3.687 23 O -0.420 6.420 24 C -0.134 4.134 25 C -0.154 4.154 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.156 4.156 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.235 0.765 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.229 0.771 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.631 -1.547 -15.295 19.277 hybrid contribution 1.018 -1.343 1.206 2.072 sum -10.613 -2.890 -14.089 17.874 Atomic orbital electron populations 1.22180 0.94998 1.02050 1.02754 1.20655 0.93099 0.98220 0.82741 0.88659 1.22013 0.93776 1.03022 0.99905 1.20083 0.89249 0.78976 0.81119 1.90704 1.70155 1.42811 1.38545 1.48642 1.09075 1.53081 1.23236 1.22164 0.97701 0.94321 0.88153 1.23175 0.94943 1.00677 0.98816 1.19605 0.92249 0.81650 0.85791 1.86119 1.93908 1.34139 1.25147 1.21504 1.00104 1.42120 0.93645 0.91644 1.25001 0.97673 0.94426 0.95960 1.69656 1.35391 1.48340 1.00197 0.86356 0.83420 0.78666 0.78523 1.19557 1.20731 1.20809 1.22347 0.78491 1.01388 0.97847 1.45832 1.67283 1.13587 1.09497 1.20434 0.76524 0.87161 0.84570 1.90636 1.50396 1.16065 1.84945 1.21934 0.98498 0.99145 0.93816 1.22368 0.93151 1.01297 0.98563 1.22490 0.99948 0.97484 0.96167 1.22350 0.95606 0.97912 1.00298 1.22136 0.97014 1.00843 0.95574 0.91861 0.92480 0.91465 0.88850 0.87659 0.92439 0.92967 0.91419 0.89701 0.76550 0.92171 0.91230 0.91238 0.77056 0.88879 0.90189 0.91186 0.91530 0.91312 0.91719 0.91441 0.91770 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.48 37.16 0.35 -1.24 16 2 C 0.16 1.97 2.13 -67.93 -0.15 1.83 16 3 H 0.10 1.52 7.39 -51.93 -0.38 1.14 16 4 C -0.15 -1.77 4.43 -27.88 -0.12 -1.89 16 5 C 0.52 8.92 7.71 -10.98 -0.08 8.83 16 6 O -0.54 -11.15 15.61 5.55 0.09 -11.07 16 7 N -0.61 -11.23 3.33 -170.51 -0.57 -11.79 16 8 C 0.10 1.66 6.49 -3.07 -0.02 1.64 16 9 C -0.14 -2.80 5.51 -24.90 -0.14 -2.94 16 10 C 0.25 5.78 0.89 -89.61 -0.08 5.71 16 11 O -0.58 -14.62 13.19 -35.23 -0.46 -15.08 16 12 C -0.54 -13.56 8.26 -34.44 -0.28 -13.84 16 13 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 14 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16 15 N -0.90 -22.46 10.74 55.43 0.60 -21.86 16 16 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 20 C 0.12 2.61 6.08 -2.52 -0.02 2.60 16 21 N -0.71 -8.63 4.16 -53.81 -0.22 -8.86 16 22 C 0.53 7.21 6.96 -10.99 -0.08 7.14 16 23 O -0.54 -9.42 14.87 5.56 0.08 -9.33 16 24 C -0.11 -1.19 3.30 -90.65 -0.30 -1.49 16 25 C -0.12 -1.23 6.31 -25.07 -0.16 -1.39 16 26 C -0.12 -1.15 6.91 -24.73 -0.17 -1.32 16 27 C -0.12 -1.22 6.83 -25.10 -0.17 -1.39 16 28 C -0.12 -1.25 6.40 -25.64 -0.16 -1.41 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 37 H 0.08 1.83 7.69 -51.93 -0.40 1.43 16 38 H 0.38 9.66 7.18 45.56 0.33 9.99 16 39 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 40 H 0.07 1.64 8.04 -51.93 -0.42 1.22 16 41 H 0.07 1.45 8.03 -51.93 -0.42 1.04 16 42 H 0.40 4.00 8.60 -40.82 -0.35 3.65 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.10 7.85 -51.93 -0.41 0.69 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.09 1.16 6.39 -51.93 -0.33 0.82 16 LS Contribution 405.00 15.07 6.10 6.10 Total: -1.00 -30.13 405.00 -9.34 -39.47 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -8.26 Total: 15.20 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.67 Total: 2.53 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.20 Total: -42.51 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.30 Total: -35.48 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.13 -9.34 -39.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.092 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds