Wall clock time and date at job start Tue Mar 31 2020 21:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46759 * 2 1 4 4 C 1.52997 * 109.47361 * 119.99912 * 2 1 3 5 5 C 1.50701 * 109.47165 * 185.00605 * 4 2 1 6 6 O 1.21285 * 120.00221 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00083 * 180.02562 * 5 4 2 8 8 C 1.47013 * 125.64773 * 359.95440 * 7 5 4 9 9 C 1.54326 * 107.27435 * 181.09631 * 8 7 5 10 10 C 1.55157 * 102.93823 * 22.19004 * 9 8 7 11 11 O 1.42905 * 111.00488 * 82.57478 * 10 9 8 12 12 C 1.50703 * 111.03921 * 206.41183 * 10 9 8 13 13 H 1.07992 * 120.00336 * 115.39535 * 12 10 9 14 14 C 1.37879 * 119.99709 * 295.40038 * 12 10 9 15 15 N 1.31519 * 120.00283 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 120.00008 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46760 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47165 * 119.99688 * 16 14 12 19 19 H 1.48501 * 109.46700 * 239.99822 * 16 14 12 20 20 C 1.47428 * 125.64821 * 179.97438 * 7 5 4 21 21 N 1.46497 * 109.47433 * 240.00262 * 2 1 3 22 22 C 1.34775 * 120.00126 * 84.99438 * 21 2 1 23 23 O 1.21281 * 120.00309 * 359.97438 * 22 21 2 24 24 C 1.50701 * 120.00142 * 180.02562 * 22 21 2 25 25 C 1.54271 * 110.03047 * 297.16735 * 24 22 21 26 26 C 1.54891 * 104.19661 * 217.10666 * 25 24 22 27 27 C 1.54893 * 102.74838 * 37.93970 * 26 25 24 28 28 C 1.53875 * 110.03629 * 180.02562 * 24 22 21 29 29 H 1.08994 * 109.47310 * 60.00029 * 1 2 3 30 30 H 1.09003 * 109.46574 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46886 * 299.99588 * 1 2 3 32 32 H 1.08993 * 109.47127 * 64.99972 * 4 2 1 33 33 H 1.09003 * 109.47072 * 304.99964 * 4 2 1 34 34 H 1.09002 * 109.88115 * 300.51130 * 8 7 5 35 35 H 1.09003 * 109.88368 * 61.52491 * 8 7 5 36 36 H 1.09000 * 110.72133 * 263.83108 * 9 8 7 37 37 H 1.08995 * 110.72116 * 140.55087 * 9 8 7 38 38 H 0.96705 * 113.99788 * 67.80231 * 11 10 9 39 39 H 0.96996 * 119.99879 * 180.02562 * 15 14 12 40 40 H 1.09003 * 110.36539 * 36.99854 * 20 7 5 41 41 H 1.08994 * 110.36519 * 274.67791 * 20 7 5 42 42 H 0.97000 * 119.99845 * 265.00065 * 21 2 1 43 43 H 1.09000 * 110.01924 * 58.60280 * 24 22 21 44 44 H 1.09003 * 110.48076 * 335.78058 * 25 24 22 45 45 H 1.09001 * 110.49254 * 98.42395 * 25 24 22 46 46 H 1.09001 * 110.75350 * 279.62575 * 26 25 24 47 47 H 1.09002 * 110.91665 * 156.32698 * 26 25 24 48 48 H 1.08997 * 110.48192 * 203.38327 * 27 26 25 49 49 H 1.08996 * 110.48579 * 80.73490 * 27 26 25 50 50 H 1.08995 * 110.03441 * 238.56769 * 28 24 22 51 51 H 1.08998 * 110.02871 * 359.94613 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6147 1.3127 6 8 4.1451 -0.0209 0.4441 7 7 4.2151 -1.1803 2.3343 8 6 3.6126 -1.9259 3.4489 9 6 4.7610 -2.3593 4.3842 10 6 5.8880 -1.3494 4.0415 11 8 5.7060 -0.1199 4.7468 12 6 7.2461 -1.9368 4.3275 13 1 7.9398 -2.1123 3.5186 14 6 7.6030 -2.2501 5.6219 15 7 6.7585 -2.0360 6.6071 16 14 9.2862 -2.9788 5.9763 17 1 10.0417 -3.1204 4.7057 18 1 10.0296 -2.0824 6.8976 19 1 9.1248 -4.3135 6.6071 20 6 5.6775 -1.1533 2.5193 21 7 2.0184 -0.6905 -1.1962 22 6 2.1471 -0.0182 -2.3571 23 8 1.8581 1.1584 -2.4118 24 6 2.6490 -0.7287 -3.5877 25 6 4.0905 -1.2281 -3.3586 26 6 4.7844 -1.0272 -4.7287 27 6 4.1800 0.3098 -5.2252 28 6 2.7065 0.2492 -4.7744 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7518 -1.7714 1.2056 33 1 1.6055 -0.2617 2.1370 34 1 2.9158 -1.2854 3.9896 35 1 3.0902 -2.8036 3.0683 36 1 5.0760 -3.3788 4.1615 37 1 4.4639 -2.2658 5.4287 38 1 5.8278 -0.1934 5.7033 39 1 7.0098 -2.2561 7.5177 40 1 6.0824 -0.1926 2.2010 41 1 6.1452 -1.9659 1.9635 42 1 2.2491 -1.6317 -1.1526 43 1 1.9958 -1.5680 -3.8264 44 1 4.5831 -0.6318 -2.5905 45 1 4.0897 -2.2825 -3.0823 46 1 4.5356 -1.8404 -5.4106 47 1 5.8645 -0.9421 -4.6092 48 1 4.2445 0.3776 -6.3111 49 1 4.6871 1.1542 -4.7585 50 1 2.0817 -0.1157 -5.5896 51 1 2.3705 1.2374 -4.4604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:55 Heat of formation + Delta-G solvation = -165.300335 kcal Electronic energy + Delta-G solvation = -30653.903338 eV Core-core repulsion = 26551.084597 eV Total energy + Delta-G solvation = -4102.818741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.44787 -40.79089 -39.09075 -38.09892 -36.62242 -36.04466 -34.17823 -32.93211 -31.59569 -30.21406 -29.82260 -29.51247 -28.87788 -26.75777 -24.17841 -23.54210 -22.01815 -21.58636 -21.46755 -20.63381 -20.08262 -19.14354 -18.40821 -18.08661 -17.44634 -16.95338 -16.70039 -16.56300 -16.39712 -15.96231 -15.87919 -15.43731 -15.04691 -14.81537 -14.60420 -14.35098 -14.21435 -13.96832 -13.75585 -13.58303 -13.30454 -13.23565 -13.05165 -12.93651 -12.82417 -12.65486 -12.63733 -12.45466 -12.26627 -12.24474 -12.04279 -11.98501 -11.95454 -11.84420 -11.68009 -11.43009 -11.27524 -10.86049 -10.69309 -10.63903 -10.14573 -10.01750 -9.51806 -8.25625 -6.40295 1.39894 1.44932 1.54279 1.68216 1.72911 2.09059 2.29443 2.39619 2.99469 3.51997 3.55322 3.63829 3.69991 3.81736 3.85489 4.05997 4.16682 4.25470 4.32222 4.40764 4.44903 4.45313 4.52494 4.55768 4.60022 4.63284 4.65853 4.68272 4.75026 4.77410 4.82579 4.92273 4.95900 5.04575 5.07402 5.20094 5.20974 5.24185 5.28293 5.34345 5.37697 5.44738 5.46442 5.56284 5.61800 5.77743 6.06436 6.59845 6.63120 6.71433 7.22792 7.31094 7.34525 7.41681 8.80286 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.002687 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.742616 B =10416.885000 C =11720.748916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.050 0.950 4 C -0.131 4.131 5 C 0.512 3.488 6 O -0.585 6.585 7 N -0.611 5.611 8 C 0.106 3.894 9 C -0.129 4.129 10 C 0.232 3.768 11 O -0.596 6.596 12 C -0.561 4.561 13 H 0.053 0.947 14 C 0.037 3.963 15 N -0.907 5.907 16 Si 0.959 3.041 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.273 1.273 20 C 0.128 3.872 21 N -0.705 5.705 22 C 0.517 3.483 23 O -0.590 6.590 24 C -0.107 4.107 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.119 4.119 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.379 0.621 39 H 0.272 0.728 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.408 0.592 43 H 0.128 0.872 44 H 0.038 0.962 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.085 0.915 49 H 0.042 0.958 50 H 0.089 0.911 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.419 -5.720 -14.816 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.051 3.949 3 H 0.068 0.932 4 C -0.171 4.171 5 C 0.302 3.698 6 O -0.466 6.466 7 N -0.343 5.343 8 C -0.015 4.015 9 C -0.167 4.167 10 C 0.191 3.809 11 O -0.405 6.405 12 C -0.599 4.599 13 H 0.071 0.929 14 C -0.165 4.165 15 N -0.546 5.546 16 Si 0.785 3.215 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C 0.004 3.996 21 N -0.355 5.355 22 C 0.305 3.695 23 O -0.471 6.471 24 C -0.128 4.128 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.163 4.163 28 C -0.157 4.157 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.230 0.770 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.244 0.756 43 H 0.146 0.854 44 H 0.057 0.943 45 H 0.109 0.891 46 H 0.111 0.889 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.061 0.939 50 H 0.107 0.893 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.516 -4.348 -15.750 21.205 hybrid contribution 1.660 -0.418 1.373 2.194 sum -11.856 -4.766 -14.377 19.235 Atomic orbital electron populations 1.22079 0.92353 1.03753 1.02639 1.20631 0.94974 0.96043 0.83219 0.93187 1.22046 0.89090 1.05658 1.00319 1.21072 0.91331 0.77530 0.79832 1.90703 1.71529 1.44322 1.40037 1.48714 1.07580 1.53798 1.24255 1.22223 0.96302 0.96023 0.86997 1.22951 0.95188 0.99519 0.99070 1.19816 0.92824 0.81722 0.86495 1.86109 1.93985 1.35532 1.24900 1.21716 1.01268 1.43123 0.93834 0.92870 1.25594 1.00473 0.94648 0.95744 1.69711 1.36342 1.48230 1.00360 0.85498 0.79869 0.78209 0.77961 1.19920 1.20793 1.19881 1.22051 0.81105 0.99593 0.96812 1.45820 1.66523 1.14086 1.09043 1.21067 0.75839 0.86808 0.85828 1.90616 1.52521 1.18145 1.85785 1.22014 0.98826 0.99791 0.92198 1.22324 0.92924 1.01636 0.98252 1.22504 0.99568 0.97825 0.95698 1.22361 0.95016 0.97519 1.01408 1.22142 0.97738 0.99409 0.96370 0.93641 0.89728 0.90006 0.84735 0.85504 0.90826 0.88522 0.91744 0.90993 0.77047 0.91883 0.94486 0.91130 0.75616 0.85413 0.94340 0.89118 0.88879 0.91673 0.89639 0.93894 0.89259 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.48 71.98 0.68 -1.91 16 2 C 0.16 3.74 2.13 44.99 0.10 3.83 16 3 H 0.05 1.66 7.39 -2.39 -0.02 1.65 16 4 C -0.13 -2.76 4.43 29.85 0.13 -2.63 16 5 C 0.51 17.12 7.71 87.66 0.68 17.79 16 6 O -0.59 -24.69 15.61 -3.04 -0.05 -24.74 16 7 N -0.61 -21.85 3.33 -811.76 -2.70 -24.55 16 8 C 0.11 3.22 6.49 86.73 0.56 3.79 16 9 C -0.13 -5.10 5.51 31.78 0.18 -4.93 16 10 C 0.23 10.96 0.89 -10.14 -0.01 10.95 16 11 O -0.60 -30.49 13.19 -148.98 -1.96 -32.46 16 12 C -0.56 -28.94 8.26 25.60 0.21 -28.73 16 13 H 0.05 2.79 7.78 -2.91 -0.02 2.76 16 14 C 0.04 1.84 5.27 84.65 0.45 2.28 16 15 N -0.91 -45.36 10.74 21.45 0.23 -45.13 16 16 Si 0.96 40.42 29.54 68.60 2.03 42.45 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 20 C 0.13 5.63 6.08 86.86 0.53 6.16 16 21 N -0.70 -16.38 4.16 -442.54 -1.84 -18.23 16 22 C 0.52 14.30 6.96 87.66 0.61 14.91 16 23 O -0.59 -21.60 14.87 -3.03 -0.05 -21.65 16 24 C -0.11 -2.15 3.30 -10.81 -0.04 -2.19 16 25 C -0.11 -2.32 6.31 31.67 0.20 -2.13 16 26 C -0.12 -2.04 6.91 31.89 0.22 -1.82 16 27 C -0.13 -2.41 6.83 31.65 0.22 -2.20 16 28 C -0.12 -2.45 6.40 31.30 0.20 -2.25 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.06 2.56 8.03 -2.39 -0.02 2.54 16 37 H 0.07 3.03 7.69 -2.39 -0.02 3.01 16 38 H 0.38 19.54 7.18 -74.05 -0.53 19.01 16 39 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 40 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 41 H 0.07 3.04 8.03 -2.39 -0.02 3.02 16 42 H 0.41 7.30 8.60 -92.71 -0.80 6.51 16 43 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.04 1.11 7.85 -2.39 -0.02 1.09 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.06 1.59 6.39 -2.39 -0.02 1.57 16 Total: -1.00 -70.65 405.00 0.17 -70.48 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: -0.40 Total: 42.88 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 4.91 Total: 10.94 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -4.31 Total: -87.91 kcal Atomic # 8 Polarization: -76.79 SS G_CDS: -2.06 Total: -78.85 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -70.65 0.17 -70.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.817 kcal (2) G-P(sol) polarization free energy of solvation -70.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds