Wall clock time and date at job start Tue Mar 31 2020 21:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.50699 * 109.47264 * 174.99836 * 4 2 1 6 6 O 1.21284 * 120.00076 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99991 * 179.97438 * 5 4 2 8 8 C 1.47419 * 125.64909 * 0.03011 * 7 5 4 9 9 C 1.54911 * 104.83098 * 204.08859 * 8 7 5 10 10 C 1.55153 * 101.58265 * 322.98760 * 9 8 7 11 11 O 1.42901 * 110.72104 * 276.96390 * 10 9 8 12 12 C 1.50700 * 110.72167 * 153.86399 * 10 9 8 13 13 H 1.08001 * 119.99919 * 241.45282 * 12 10 9 14 14 C 1.37884 * 119.99760 * 61.45696 * 12 10 9 15 15 N 1.31511 * 119.99774 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99671 * 180.02562 * 14 12 10 17 17 H 1.48490 * 109.47265 * 89.99862 * 16 14 12 18 18 H 1.48502 * 109.46760 * 209.99979 * 16 14 12 19 19 H 1.48496 * 109.47158 * 329.99490 * 16 14 12 20 20 C 1.47025 * 125.64485 * 179.71277 * 7 5 4 21 21 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 22 22 C 1.34777 * 119.99525 * 274.99614 * 21 2 1 23 23 O 1.21283 * 120.00463 * 0.02562 * 22 21 2 24 24 C 1.50700 * 119.99675 * 179.72583 * 22 21 2 25 25 C 1.54272 * 110.03228 * 297.44428 * 24 22 21 26 26 C 1.54893 * 104.19283 * 217.10695 * 25 24 22 27 27 C 1.54885 * 102.74957 * 37.94340 * 26 25 24 28 28 C 1.53881 * 110.03193 * 180.27751 * 24 22 21 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 34 34 H 1.08999 * 110.36640 * 322.92629 * 8 7 5 35 35 H 1.09000 * 110.37185 * 85.24979 * 8 7 5 36 36 H 1.09005 * 111.00452 * 81.06490 * 9 8 7 37 37 H 1.09004 * 111.00369 * 204.87756 * 9 8 7 38 38 H 0.96700 * 113.99689 * 298.54221 * 11 10 9 39 39 H 0.97005 * 119.99368 * 180.02562 * 15 14 12 40 40 H 1.08993 * 109.88604 * 298.40000 * 20 7 5 41 41 H 1.09006 * 109.88099 * 59.56912 * 20 7 5 42 42 H 0.97000 * 120.00580 * 95.00360 * 21 2 1 43 43 H 1.08995 * 110.02074 * 58.88910 * 24 22 21 44 44 H 1.09000 * 110.48621 * 335.78219 * 25 24 22 45 45 H 1.08999 * 110.48576 * 98.42852 * 25 24 22 46 46 H 1.09002 * 110.75584 * 279.62470 * 26 25 24 47 47 H 1.09007 * 110.91059 * 156.32972 * 26 25 24 48 48 H 1.09001 * 110.48155 * 203.37708 * 27 26 25 49 49 H 1.09004 * 110.60100 * 80.79492 * 27 26 25 50 50 H 1.08997 * 110.03079 * 238.56875 * 28 24 22 51 51 H 1.08997 * 110.03159 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6147 -1.3129 6 8 4.1450 -0.0203 -0.4447 7 7 4.2149 -1.1802 -2.3346 8 6 3.6107 -1.9279 -3.4522 9 6 4.7401 -2.8560 -3.9649 10 6 5.9871 -1.9468 -3.8050 11 8 6.1205 -1.0699 -4.9254 12 6 7.2327 -2.7764 -3.6283 13 1 7.8132 -2.6926 -2.7215 14 6 7.6313 -3.6423 -4.6246 15 7 6.9242 -3.7446 -5.7286 16 14 9.1750 -4.6711 -4.4053 17 1 8.8216 -5.9637 -3.7656 18 1 9.7915 -4.9274 -5.7317 19 1 10.1390 -3.9399 -3.5444 20 6 5.6727 -1.1478 -2.5225 21 7 2.0184 -0.6908 1.1960 22 6 2.1472 -0.0185 2.3570 23 8 1.8583 1.1582 2.4118 24 6 2.6437 -0.7305 3.5889 25 6 1.6610 -1.8527 3.9828 26 6 1.6602 -1.8304 5.5316 27 6 1.7422 -0.3172 5.8517 28 6 2.6953 0.2457 4.7772 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -1.7714 -1.2058 33 1 1.6053 -0.2615 -2.1371 34 1 2.7649 -2.5185 -3.1001 35 1 3.2950 -1.2437 -4.2398 36 1 4.8247 -3.7481 -3.3442 37 1 4.5821 -3.1232 -5.0098 38 1 6.2431 -1.5259 -5.7693 39 1 7.2044 -4.3541 -6.4293 40 1 6.0094 -0.1172 -2.6335 41 1 6.1669 -1.6115 -1.6687 42 1 2.2492 -1.6319 1.1524 43 1 3.6337 -1.1477 3.4052 44 1 0.6639 -1.6392 3.5977 45 1 2.0148 -2.8159 3.6153 46 1 2.5297 -2.3564 5.9259 47 1 0.7391 -2.2594 5.9263 48 1 2.1552 -0.1600 6.8481 49 1 0.7588 0.1459 5.7700 50 1 3.7102 0.3016 5.1707 51 1 2.3608 1.2344 4.4630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839946.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:59 Heat of formation + Delta-G solvation = -144.349455 kcal Electronic energy + Delta-G solvation = -30422.533237 eV Core-core repulsion = 26320.622995 eV Total energy + Delta-G solvation = -4101.910242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34946 -39.48403 -37.70976 -37.07170 -35.50607 -34.35573 -32.26949 -31.89216 -29.99233 -29.08927 -28.80049 -28.63867 -27.63557 -25.02294 -22.99076 -22.31056 -21.13580 -20.73605 -19.87838 -19.55337 -18.75562 -17.47685 -17.29893 -16.62184 -16.43780 -15.80704 -15.32824 -15.06638 -14.96937 -14.77648 -14.67229 -14.26864 -13.79020 -13.59967 -13.40795 -13.17425 -13.09950 -12.73095 -12.44758 -12.16434 -12.06192 -11.87216 -11.75563 -11.55648 -11.45600 -11.44775 -11.39267 -11.33450 -11.26125 -11.05829 -10.97166 -10.91831 -10.67727 -10.66194 -10.53151 -10.17140 -9.63789 -9.51714 -9.35713 -8.99176 -8.72635 -8.28306 -8.05919 -6.34026 -4.41487 2.76181 2.99999 3.15862 3.22884 3.23902 3.28074 3.45745 4.22492 4.29411 4.39992 4.54097 4.66510 4.73714 4.94207 5.01697 5.10744 5.19639 5.24428 5.29569 5.32018 5.37752 5.42933 5.46540 5.48213 5.52067 5.58354 5.60927 5.69941 5.70270 5.84444 5.86111 5.94664 5.96385 5.98823 6.09596 6.11737 6.17807 6.21639 6.40482 6.56824 6.63530 6.84295 6.90939 7.22993 7.29072 7.56886 7.67876 7.96962 8.06505 8.33550 8.57589 8.62016 9.24936 9.33986 10.73491 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.002530 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.140709 B =11065.810432 C =12085.052075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 H 0.095 0.905 4 C -0.147 4.147 5 C 0.516 3.484 6 O -0.544 6.544 7 N -0.609 5.609 8 C 0.094 3.906 9 C -0.134 4.134 10 C 0.247 3.753 11 O -0.586 6.586 12 C -0.534 4.534 13 H 0.064 0.936 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.123 3.877 21 N -0.712 5.712 22 C 0.528 3.472 23 O -0.544 6.544 24 C -0.115 4.115 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.119 4.119 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.382 0.618 39 H 0.268 0.732 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.397 0.603 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.066 0.934 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.257 -0.047 13.138 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 H 0.113 0.887 4 C -0.187 4.187 5 C 0.304 3.696 6 O -0.423 6.423 7 N -0.342 5.342 8 C -0.029 4.029 9 C -0.173 4.173 10 C 0.206 3.794 11 O -0.394 6.394 12 C -0.573 4.573 13 H 0.082 0.918 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.730 3.270 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.002 3.998 21 N -0.362 5.362 22 C 0.315 3.685 23 O -0.421 6.421 24 C -0.136 4.136 25 C -0.152 4.152 26 C -0.161 4.161 27 C -0.161 4.161 28 C -0.157 4.157 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.232 0.768 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.230 0.770 43 H 0.116 0.884 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.252 1.530 13.968 20.014 hybrid contribution 1.070 -1.695 -0.726 2.131 sum -13.183 -0.164 13.242 18.685 Atomic orbital electron populations 1.22181 0.94974 1.02095 1.02730 1.20655 0.93120 0.98167 0.82767 0.88692 1.22020 0.93623 1.03159 0.99906 1.20117 0.89309 0.79123 0.81041 1.90712 1.70165 1.42893 1.38501 1.48689 1.09024 1.53095 1.23423 1.22518 0.97340 0.94582 0.88425 1.23295 0.94520 0.97450 1.02034 1.19474 0.92305 0.85206 0.82379 1.86141 1.95755 1.38286 1.19264 1.21507 1.09617 1.22463 1.03685 0.91823 1.24986 0.97063 0.96160 0.94819 1.69693 1.38925 1.38021 1.06896 0.86412 0.82716 0.80187 0.77667 1.20482 1.20988 1.19674 1.22046 0.78392 1.00683 0.98705 1.45833 1.67304 1.13644 1.09427 1.20399 0.76692 0.87037 0.84407 1.90633 1.50487 1.16075 1.84918 1.21950 1.00912 0.97040 0.93734 1.22346 0.98950 0.97384 0.96503 1.22497 1.01833 0.96715 0.95086 1.22360 0.99857 0.95333 0.98563 1.22155 0.99956 1.00183 0.93386 0.92431 0.91855 0.91492 0.88698 0.87670 0.92188 0.91934 0.91492 0.89362 0.76775 0.92201 0.92212 0.91118 0.76965 0.88355 0.91228 0.90920 0.91250 0.91462 0.91648 0.91649 0.91524 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.16 1.95 2.13 -67.93 -0.14 1.80 16 3 H 0.10 1.48 7.39 -51.93 -0.38 1.10 16 4 C -0.15 -1.73 4.25 -27.88 -0.12 -1.85 16 5 C 0.52 8.86 7.71 -10.99 -0.08 8.77 16 6 O -0.54 -11.24 15.68 5.55 0.09 -11.16 16 7 N -0.61 -11.28 3.33 -170.51 -0.57 -11.84 16 8 C 0.09 1.57 6.68 -2.53 -0.02 1.55 16 9 C -0.13 -2.74 5.47 -24.58 -0.13 -2.87 16 10 C 0.25 5.75 0.85 -89.93 -0.08 5.68 16 11 O -0.59 -14.34 13.07 -35.23 -0.46 -14.80 16 12 C -0.53 -13.65 8.22 -34.44 -0.28 -13.93 16 13 H 0.06 1.64 7.58 -52.49 -0.40 1.25 16 14 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 15 N -0.90 -22.36 10.67 55.43 0.59 -21.77 16 16 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 C 0.12 2.71 6.23 -3.05 -0.02 2.69 16 21 N -0.71 -8.69 4.16 -53.80 -0.22 -8.92 16 22 C 0.53 7.26 6.96 -10.98 -0.08 7.19 16 23 O -0.54 -9.39 14.87 5.55 0.08 -9.31 16 24 C -0.11 -1.24 3.30 -90.65 -0.30 -1.54 16 25 C -0.11 -0.94 6.31 -25.07 -0.16 -1.10 16 26 C -0.12 -0.92 6.91 -24.74 -0.17 -1.09 16 27 C -0.12 -1.04 6.83 -25.07 -0.17 -1.22 16 28 C -0.12 -1.26 6.40 -25.61 -0.16 -1.43 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.91 7.85 -51.93 -0.41 0.50 16 33 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.80 7.48 -51.93 -0.39 0.41 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.40 8.04 -51.93 -0.42 0.99 16 37 H 0.09 1.88 7.54 -51.93 -0.39 1.49 16 38 H 0.38 9.32 7.46 45.56 0.34 9.66 16 39 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 40 H 0.06 1.39 8.07 -51.93 -0.42 0.97 16 41 H 0.07 1.59 7.66 -51.93 -0.40 1.19 16 42 H 0.40 4.11 8.60 -40.82 -0.35 3.76 16 43 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 0.59 7.85 -51.93 -0.41 0.18 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.09 1.16 6.39 -51.93 -0.33 0.83 16 LS Contribution 403.56 15.07 6.08 6.08 Total: -1.00 -30.28 403.56 -9.25 -39.53 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -8.16 Total: 14.18 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -1.66 Total: 3.17 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.20 Total: -42.53 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.29 Total: -35.27 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.28 -9.25 -39.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839946.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.816 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds