Wall clock time and date at job start Tue Mar 31 2020 21:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.50699 * 109.47264 * 174.99836 * 4 2 1 6 6 O 1.21284 * 120.00076 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99991 * 179.97438 * 5 4 2 8 8 C 1.47419 * 125.64909 * 0.03011 * 7 5 4 9 9 C 1.54911 * 104.83098 * 204.08859 * 8 7 5 10 10 C 1.55153 * 101.58265 * 322.98760 * 9 8 7 11 11 O 1.42901 * 110.72104 * 276.96390 * 10 9 8 12 12 C 1.50700 * 110.72167 * 153.86399 * 10 9 8 13 13 H 1.08001 * 119.99919 * 241.45282 * 12 10 9 14 14 C 1.37884 * 119.99760 * 61.45696 * 12 10 9 15 15 N 1.31511 * 119.99774 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99671 * 180.02562 * 14 12 10 17 17 H 1.48490 * 109.47265 * 89.99862 * 16 14 12 18 18 H 1.48502 * 109.46760 * 209.99979 * 16 14 12 19 19 H 1.48496 * 109.47158 * 329.99490 * 16 14 12 20 20 C 1.47025 * 125.64485 * 179.71277 * 7 5 4 21 21 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 22 22 C 1.34777 * 119.99525 * 274.99614 * 21 2 1 23 23 O 1.21283 * 120.00463 * 0.02562 * 22 21 2 24 24 C 1.50700 * 119.99675 * 179.72583 * 22 21 2 25 25 C 1.54272 * 110.03228 * 297.44428 * 24 22 21 26 26 C 1.54893 * 104.19283 * 217.10695 * 25 24 22 27 27 C 1.54885 * 102.74957 * 37.94340 * 26 25 24 28 28 C 1.53881 * 110.03193 * 180.27751 * 24 22 21 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 34 34 H 1.08999 * 110.36640 * 322.92629 * 8 7 5 35 35 H 1.09000 * 110.37185 * 85.24979 * 8 7 5 36 36 H 1.09005 * 111.00452 * 81.06490 * 9 8 7 37 37 H 1.09004 * 111.00369 * 204.87756 * 9 8 7 38 38 H 0.96700 * 113.99689 * 298.54221 * 11 10 9 39 39 H 0.97005 * 119.99368 * 180.02562 * 15 14 12 40 40 H 1.08993 * 109.88604 * 298.40000 * 20 7 5 41 41 H 1.09006 * 109.88099 * 59.56912 * 20 7 5 42 42 H 0.97000 * 120.00580 * 95.00360 * 21 2 1 43 43 H 1.08995 * 110.02074 * 58.88910 * 24 22 21 44 44 H 1.09000 * 110.48621 * 335.78219 * 25 24 22 45 45 H 1.08999 * 110.48576 * 98.42852 * 25 24 22 46 46 H 1.09002 * 110.75584 * 279.62470 * 26 25 24 47 47 H 1.09007 * 110.91059 * 156.32972 * 26 25 24 48 48 H 1.09001 * 110.48155 * 203.37708 * 27 26 25 49 49 H 1.09004 * 110.60100 * 80.79492 * 27 26 25 50 50 H 1.08997 * 110.03079 * 238.56875 * 28 24 22 51 51 H 1.08997 * 110.03159 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6147 -1.3129 6 8 4.1450 -0.0203 -0.4447 7 7 4.2149 -1.1802 -2.3346 8 6 3.6107 -1.9279 -3.4522 9 6 4.7401 -2.8560 -3.9649 10 6 5.9871 -1.9468 -3.8050 11 8 6.1205 -1.0699 -4.9254 12 6 7.2327 -2.7764 -3.6283 13 1 7.8132 -2.6926 -2.7215 14 6 7.6313 -3.6423 -4.6246 15 7 6.9242 -3.7446 -5.7286 16 14 9.1750 -4.6711 -4.4053 17 1 8.8216 -5.9637 -3.7656 18 1 9.7915 -4.9274 -5.7317 19 1 10.1390 -3.9399 -3.5444 20 6 5.6727 -1.1478 -2.5225 21 7 2.0184 -0.6908 1.1960 22 6 2.1472 -0.0185 2.3570 23 8 1.8583 1.1582 2.4118 24 6 2.6437 -0.7305 3.5889 25 6 1.6610 -1.8527 3.9828 26 6 1.6602 -1.8304 5.5316 27 6 1.7422 -0.3172 5.8517 28 6 2.6953 0.2457 4.7772 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -1.7714 -1.2058 33 1 1.6053 -0.2615 -2.1371 34 1 2.7649 -2.5185 -3.1001 35 1 3.2950 -1.2437 -4.2398 36 1 4.8247 -3.7481 -3.3442 37 1 4.5821 -3.1232 -5.0098 38 1 6.2431 -1.5259 -5.7693 39 1 7.2044 -4.3541 -6.4293 40 1 6.0094 -0.1172 -2.6335 41 1 6.1669 -1.6115 -1.6687 42 1 2.2492 -1.6319 1.1524 43 1 3.6337 -1.1477 3.4052 44 1 0.6639 -1.6392 3.5977 45 1 2.0148 -2.8159 3.6153 46 1 2.5297 -2.3564 5.9259 47 1 0.7391 -2.2594 5.9263 48 1 2.1552 -0.1600 6.8481 49 1 0.7588 0.1459 5.7700 50 1 3.7102 0.3016 5.1707 51 1 2.3608 1.2344 4.4630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839946.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:58 Heat of formation + Delta-G solvation = -165.135138 kcal Electronic energy + Delta-G solvation = -30423.434572 eV Core-core repulsion = 26320.622995 eV Total energy + Delta-G solvation = -4102.811577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.46647 -40.82137 -39.13427 -38.08905 -36.63450 -36.05910 -34.21474 -32.93159 -31.52058 -30.25876 -29.81553 -29.50687 -28.87942 -26.75399 -24.17219 -23.58367 -22.08865 -21.56054 -21.41329 -20.63551 -20.08753 -19.15630 -18.43865 -18.04893 -17.50690 -16.93784 -16.73910 -16.60390 -16.32294 -16.06474 -15.71727 -15.63251 -15.19265 -14.79806 -14.43877 -14.36106 -14.15157 -13.88600 -13.85212 -13.51946 -13.29090 -13.23274 -13.12108 -12.92696 -12.83201 -12.66346 -12.65462 -12.43688 -12.29083 -12.23990 -12.02133 -12.00046 -11.94647 -11.91784 -11.65068 -11.43023 -11.26780 -10.88053 -10.69937 -10.62254 -10.14577 -10.02603 -9.59163 -8.25314 -6.39327 1.40189 1.44163 1.52507 1.65410 1.72237 2.04680 2.28233 2.39339 3.00286 3.51317 3.53439 3.65073 3.68779 3.82374 3.87865 4.02450 4.16918 4.24816 4.27014 4.41500 4.46208 4.48439 4.53006 4.56385 4.59137 4.61929 4.64746 4.68606 4.72741 4.80994 4.82911 4.93949 4.97624 5.06627 5.09080 5.18925 5.23149 5.23576 5.25900 5.32529 5.37033 5.45820 5.47935 5.55807 5.61110 5.76723 6.08667 6.57685 6.61973 6.69190 7.19146 7.30855 7.32824 7.40321 8.80409 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.002530 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.140709 B =11065.810432 C =12085.052075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.156 3.844 3 H 0.053 0.947 4 C -0.132 4.132 5 C 0.512 3.488 6 O -0.587 6.587 7 N -0.612 5.612 8 C 0.103 3.897 9 C -0.125 4.125 10 C 0.233 3.767 11 O -0.595 6.595 12 C -0.563 4.563 13 H 0.047 0.953 14 C 0.039 3.961 15 N -0.903 5.903 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.130 3.870 21 N -0.706 5.706 22 C 0.519 3.481 23 O -0.589 6.589 24 C -0.115 4.115 25 C -0.107 4.107 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.123 4.123 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.380 0.620 39 H 0.272 0.728 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.408 0.592 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.069 0.931 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.362 -2.426 13.205 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.051 3.949 3 H 0.071 0.929 4 C -0.171 4.171 5 C 0.303 3.697 6 O -0.468 6.468 7 N -0.345 5.345 8 C -0.018 4.018 9 C -0.164 4.164 10 C 0.193 3.807 11 O -0.404 6.404 12 C -0.601 4.601 13 H 0.066 0.934 14 C -0.163 4.163 15 N -0.542 5.542 16 Si 0.782 3.218 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.205 1.205 20 C 0.007 3.993 21 N -0.356 5.356 22 C 0.307 3.693 23 O -0.469 6.469 24 C -0.136 4.136 25 C -0.145 4.145 26 C -0.156 4.156 27 C -0.158 4.158 28 C -0.161 4.161 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.229 0.771 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.243 0.757 43 H 0.117 0.883 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.088 0.912 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.385 -0.884 14.013 21.579 hybrid contribution 1.802 -0.884 -0.766 2.149 sum -14.583 -1.768 13.247 19.780 Atomic orbital electron populations 1.22082 0.92320 1.03728 1.02693 1.20663 0.95010 0.96132 0.83108 0.92881 1.22072 0.88768 1.05704 1.00563 1.21148 0.91447 0.77554 0.79594 1.90704 1.71598 1.44483 1.39987 1.48756 1.07377 1.53824 1.24522 1.22569 0.97023 0.94171 0.88066 1.23063 0.94514 0.97261 1.01529 1.19630 0.93122 0.85644 0.82283 1.86128 1.95900 1.38875 1.19466 1.21706 1.10993 1.23774 1.03635 0.93438 1.25548 0.99266 0.96830 0.94619 1.69741 1.39505 1.38020 1.06957 0.85586 0.79694 0.78948 0.77548 1.19676 1.20395 1.20529 1.21710 0.81194 0.98695 0.97703 1.45844 1.66570 1.14095 1.09062 1.20973 0.76086 0.86673 0.85577 1.90611 1.52573 1.18047 1.85710 1.22016 1.01580 0.97670 0.92346 1.22353 0.98009 0.96937 0.97222 1.22505 1.03073 0.95677 0.94344 1.22349 0.98940 0.96231 0.98313 1.22163 1.00715 0.98919 0.94325 0.89836 0.93743 0.89761 0.84830 0.84893 0.87246 0.91045 0.92283 0.90280 0.77068 0.91877 0.94732 0.92621 0.75676 0.88259 0.91388 0.89057 0.90328 0.89899 0.90421 0.92180 0.91202 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.48 71.98 0.68 -1.81 16 2 C 0.16 3.61 2.13 44.99 0.10 3.71 16 3 H 0.05 1.70 7.39 -2.38 -0.02 1.68 16 4 C -0.13 -2.64 4.25 29.85 0.13 -2.51 16 5 C 0.51 16.87 7.71 87.66 0.68 17.54 16 6 O -0.59 -24.63 15.68 -3.04 -0.05 -24.67 16 7 N -0.61 -21.86 3.33 -811.77 -2.70 -24.56 16 8 C 0.10 3.12 6.68 86.86 0.58 3.70 16 9 C -0.12 -4.94 5.47 31.99 0.17 -4.77 16 10 C 0.23 11.00 0.85 -10.35 -0.01 10.99 16 11 O -0.59 -29.56 13.07 -148.98 -1.95 -31.51 16 12 C -0.56 -29.29 8.22 25.60 0.21 -29.08 16 13 H 0.05 2.54 7.58 -2.91 -0.02 2.52 16 14 C 0.04 1.96 5.28 84.66 0.45 2.40 16 15 N -0.90 -44.68 10.67 21.45 0.23 -44.45 16 16 Si 0.96 40.56 29.54 68.60 2.03 42.59 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 18 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 20 C 0.13 5.86 6.23 86.73 0.54 6.40 16 21 N -0.71 -16.53 4.16 -442.52 -1.84 -18.37 16 22 C 0.52 14.53 6.96 87.66 0.61 15.14 16 23 O -0.59 -21.47 14.87 -3.04 -0.05 -21.51 16 24 C -0.11 -2.44 3.30 -10.81 -0.04 -2.48 16 25 C -0.11 -1.55 6.31 31.67 0.20 -1.35 16 26 C -0.12 -1.48 6.91 31.88 0.22 -1.26 16 27 C -0.12 -1.93 6.83 31.67 0.22 -1.72 16 28 C -0.12 -2.69 6.40 31.32 0.20 -2.49 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.13 1.76 7.85 -2.39 -0.02 1.74 16 33 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.11 2.28 7.48 -2.39 -0.02 2.27 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 2.40 8.04 -2.38 -0.02 2.38 16 37 H 0.08 3.27 7.54 -2.38 -0.02 3.25 16 38 H 0.38 18.76 7.46 -74.06 -0.55 18.21 16 39 H 0.27 12.79 8.31 -92.70 -0.77 12.02 16 40 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 41 H 0.06 2.61 7.66 -2.38 -0.02 2.59 16 42 H 0.41 7.58 8.60 -92.71 -0.80 6.78 16 43 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.07 1.02 7.85 -2.39 -0.02 1.00 16 45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 47 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 48 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.06 1.67 6.39 -2.39 -0.02 1.66 16 Total: -1.00 -70.01 403.56 0.19 -69.82 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -0.42 Total: 40.25 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 4.94 Total: 12.42 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -4.31 Total: -87.38 kcal Atomic # 8 Polarization: -75.65 SS G_CDS: -2.04 Total: -77.69 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -70.01 0.19 -69.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839946.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.314 kcal (2) G-P(sol) polarization free energy of solvation -70.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds