Wall clock time and date at job start Tue Mar 31 2020 21:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47041 * 2 1 4 4 N 1.46501 * 109.47505 * 240.00244 * 2 1 3 5 5 C 1.34767 * 120.00196 * 84.99668 * 4 2 1 6 6 O 1.21287 * 120.00208 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00030 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46771 * 299.99764 * 7 5 4 9 9 C 1.53006 * 109.46821 * 180.02562 * 8 7 5 10 10 C 1.52988 * 109.47130 * 60.00116 * 9 8 7 11 11 C 1.53001 * 109.47619 * 299.99969 * 10 9 8 12 12 C 1.52999 * 109.46904 * 180.02562 * 7 5 4 13 13 C 1.50702 * 109.47195 * 119.99748 * 2 1 3 14 14 O 1.21279 * 119.99855 * 93.45796 * 13 2 1 15 15 N 1.34778 * 120.00131 * 273.46071 * 13 2 1 16 16 C 1.47422 * 125.64829 * 355.05286 * 15 13 2 17 17 C 1.54906 * 104.83349 * 155.83795 * 16 15 13 18 18 C 1.55155 * 101.58216 * 37.00460 * 17 16 15 19 19 O 1.42904 * 110.71478 * 82.86435 * 18 17 16 20 20 C 1.50699 * 110.72068 * 205.95850 * 18 17 16 21 21 H 1.08003 * 119.99876 * 116.16173 * 20 18 17 22 22 C 1.37878 * 120.00138 * 296.15851 * 20 18 17 23 23 N 1.31520 * 119.99810 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 120.00077 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47035 * 90.00191 * 24 22 20 26 26 H 1.48497 * 109.46768 * 210.00097 * 24 22 20 27 27 H 1.48496 * 109.46818 * 330.00025 * 24 22 20 28 28 C 1.47020 * 125.64505 * 175.00889 * 15 13 2 29 29 H 1.08996 * 109.47056 * 174.75892 * 1 2 3 30 30 H 1.08999 * 109.47801 * 294.76413 * 1 2 3 31 31 H 1.09005 * 109.47237 * 54.76493 * 1 2 3 32 32 H 0.96999 * 119.99375 * 265.00101 * 4 2 1 33 33 H 1.08991 * 109.47258 * 60.00082 * 7 5 4 34 34 H 1.08991 * 109.47489 * 300.00176 * 8 7 5 35 35 H 1.09002 * 109.46864 * 60.00205 * 8 7 5 36 36 H 1.09003 * 109.46923 * 299.99938 * 9 8 7 37 37 H 1.08993 * 109.46679 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47095 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47363 * 60.00091 * 10 9 8 40 40 H 1.09003 * 109.46853 * 300.00435 * 11 10 9 41 41 H 1.09002 * 109.47310 * 180.02562 * 11 10 9 42 42 H 1.09004 * 109.47184 * 299.99670 * 12 7 5 43 43 H 1.09003 * 109.47702 * 59.99872 * 12 7 5 44 44 H 1.09001 * 110.36773 * 36.99646 * 16 15 13 45 45 H 1.09005 * 110.36326 * 274.67489 * 16 15 13 46 46 H 1.09004 * 110.99990 * 278.93425 * 17 16 15 47 47 H 1.09002 * 111.03893 * 155.09955 * 17 16 15 48 48 H 0.96696 * 114.00426 * 61.45813 * 19 18 17 49 49 H 0.97003 * 119.99844 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.88422 * 61.68263 * 28 15 13 51 51 H 1.08990 * 109.88683 * 300.50826 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8590 1.1587 -2.4115 7 6 2.6490 -0.7288 -3.5877 8 6 4.0515 -1.2796 -3.3221 9 6 4.5613 -2.0005 -4.5717 10 6 4.6130 -1.0169 -5.7424 11 6 3.2105 -0.4660 -6.0080 12 6 2.7011 0.2546 -4.7587 13 6 2.0323 -0.7104 1.2305 14 8 2.2942 -1.8936 1.1832 15 7 2.1905 -0.0308 2.3836 16 6 2.0101 1.4221 2.5563 17 6 1.6874 1.6057 4.0602 18 6 2.6016 0.5325 4.7082 19 8 3.9310 1.0316 4.8695 20 6 2.0392 0.0816 6.0316 21 1 1.7227 -0.9426 6.1630 22 6 1.9288 0.9765 7.0747 23 7 2.3139 2.2239 6.9145 24 14 1.2323 0.4174 8.7153 25 1 2.3354 -0.0730 9.5800 26 1 0.5528 1.5587 9.3793 27 1 0.2550 -0.6779 8.4907 28 6 2.5708 -0.6158 3.6777 29 1 -0.3633 -1.0233 -0.0939 30 1 -0.3635 0.4305 0.9331 31 1 -0.3634 0.5929 -0.8394 32 1 2.2491 -1.6317 -1.1526 33 1 1.9762 -1.5505 -3.8326 34 1 4.7243 -0.4579 -3.0772 35 1 4.0147 -1.9800 -2.4877 36 1 3.8886 -2.8223 -4.8170 37 1 5.5602 -2.3932 -4.3823 38 1 4.9766 -1.5303 -6.6325 39 1 5.2857 -0.1951 -5.4972 40 1 2.5378 -1.2878 -6.2533 41 1 3.2473 0.2344 -6.8424 42 1 1.7021 0.6474 -4.9480 43 1 3.3742 1.0762 -4.5136 44 1 1.1808 1.7768 1.9443 45 1 2.9272 1.9516 2.2977 46 1 0.6367 1.3976 4.2625 47 1 1.9578 2.6057 4.3992 48 1 3.9937 1.8039 5.4479 49 1 2.2358 2.8536 7.6482 50 1 3.5574 -1.0728 3.6023 51 1 1.8358 -1.3628 3.9771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:38 Heat of formation + Delta-G solvation = -149.334129 kcal Electronic energy + Delta-G solvation = -30451.105209 eV Core-core repulsion = 26348.978815 eV Total energy + Delta-G solvation = -4102.126394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60497 -39.57567 -37.92242 -37.33212 -34.92539 -34.44494 -32.23739 -32.03164 -31.01497 -30.38169 -29.49727 -28.35980 -25.62264 -24.61401 -23.35009 -22.82054 -22.10709 -20.57908 -19.95772 -19.80029 -19.01568 -17.70345 -17.22233 -16.46025 -16.15991 -15.71683 -15.40492 -15.01008 -14.84181 -14.69174 -14.40546 -14.32839 -14.20726 -13.95008 -13.83159 -13.06645 -12.94491 -12.85049 -12.54855 -12.49622 -12.42934 -12.15200 -12.07864 -11.68102 -11.57560 -11.51590 -11.45338 -11.42122 -11.36720 -10.94572 -10.93384 -10.71984 -10.69060 -10.51263 -10.40220 -10.17753 -9.79472 -9.62798 -9.45501 -9.14089 -8.70969 -8.28448 -8.15218 -6.33852 -4.41160 2.50864 2.73797 2.97227 3.17407 3.24956 3.28095 3.53281 4.22884 4.34112 4.38703 4.43303 4.62823 4.87644 4.88661 4.93542 4.95375 5.09438 5.10518 5.12879 5.17314 5.21757 5.32673 5.45900 5.52483 5.56581 5.66871 5.73551 5.74475 5.77858 5.80320 5.82812 5.88229 5.94024 5.94942 6.01714 6.05456 6.12648 6.15390 6.32487 6.37848 6.58168 6.80638 6.87385 7.22119 7.27739 7.43137 7.68475 7.92467 7.95630 8.13717 8.38740 8.61011 9.26072 9.36298 10.74120 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027354 B = 0.002233 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.385421 B =12536.493985 C =12698.794575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.107 0.893 4 N -0.713 5.713 5 C 0.519 3.481 6 O -0.541 6.541 7 C -0.104 4.104 8 C -0.114 4.114 9 C -0.117 4.117 10 C -0.122 4.122 11 C -0.119 4.119 12 C -0.099 4.099 13 C 0.520 3.480 14 O -0.553 6.553 15 N -0.600 5.600 16 C 0.090 3.910 17 C -0.136 4.136 18 C 0.248 3.752 19 O -0.586 6.586 20 C -0.535 4.535 21 H 0.064 0.936 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.272 1.272 28 C 0.122 3.878 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.409 0.591 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.384 0.616 49 H 0.269 0.731 50 H 0.063 0.937 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 -3.468 -21.035 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 H 0.125 0.875 4 N -0.366 5.366 5 C 0.306 3.694 6 O -0.418 6.418 7 C -0.125 4.125 8 C -0.152 4.152 9 C -0.155 4.155 10 C -0.160 4.160 11 C -0.157 4.157 12 C -0.137 4.137 13 C 0.307 3.693 14 O -0.432 6.432 15 N -0.332 5.332 16 C -0.033 4.033 17 C -0.174 4.174 18 C 0.207 3.793 19 O -0.395 6.395 20 C -0.573 4.573 21 H 0.083 0.917 22 C -0.130 4.130 23 N -0.536 5.536 24 Si 0.731 3.269 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C 0.001 3.999 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.246 0.754 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.107 0.893 48 H 0.235 0.765 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.072 -3.601 -21.444 21.744 hybrid contribution -0.458 -0.115 1.477 1.550 sum -0.530 -3.716 -19.967 20.317 Atomic orbital electron populations 1.22050 0.92663 1.03155 1.03467 1.20752 0.95869 0.97906 0.83507 0.87510 1.45875 1.67250 1.14846 1.08668 1.20714 0.77080 0.87259 0.84380 1.90695 1.50093 1.15946 1.85033 1.21344 0.98474 0.99452 0.93211 1.21562 0.94577 1.00523 0.98491 1.21519 1.01382 0.98050 0.94519 1.21573 0.97238 0.99071 0.98114 1.21552 0.96628 1.00007 0.97502 1.21338 1.02422 0.97235 0.92678 1.20071 0.78439 0.87003 0.83771 1.90647 1.52454 1.15662 1.84481 1.48599 1.66010 1.09663 1.08951 1.22622 1.00277 0.80083 1.00281 1.23330 1.01293 1.02754 0.90072 1.19456 0.80665 0.87754 0.91391 1.86122 1.29419 1.51964 1.72001 1.21498 1.42319 0.97228 0.96260 0.91739 1.24985 0.94231 0.94642 0.99141 1.69643 1.47575 1.03325 1.33014 0.86400 0.79207 0.78371 0.82924 1.20373 1.21027 1.19725 1.22122 0.99825 0.97152 0.80826 0.91666 0.90740 0.90969 0.75407 0.88473 0.91233 0.91150 0.91724 0.91559 0.92005 0.91849 0.91955 0.91693 0.91223 0.91113 0.91776 0.91579 0.91290 0.89310 0.76487 0.92116 0.91886 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.43 37.16 0.35 -1.62 16 2 C 0.13 1.86 2.29 -69.08 -0.16 1.70 16 3 H 0.11 1.61 6.61 -51.93 -0.34 1.27 16 4 N -0.71 -9.15 4.95 -54.93 -0.27 -9.43 16 5 C 0.52 6.55 7.12 -10.99 -0.08 6.47 16 6 O -0.54 -8.54 15.64 5.55 0.09 -8.45 16 7 C -0.10 -0.95 2.53 -91.77 -0.23 -1.19 16 8 C -0.11 -0.96 5.10 -26.73 -0.14 -1.10 16 9 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 10 C -0.12 -0.81 5.92 -26.74 -0.16 -0.97 16 11 C -0.12 -0.82 5.92 -26.75 -0.16 -0.98 16 12 C -0.10 -0.89 4.49 -26.75 -0.12 -1.01 16 13 C 0.52 9.24 7.04 -10.98 -0.08 9.17 16 14 O -0.55 -11.03 16.37 5.56 0.09 -10.94 16 15 N -0.60 -11.42 3.33 -170.53 -0.57 -11.98 16 16 C 0.09 1.58 6.35 -2.53 -0.02 1.57 16 17 C -0.14 -2.82 5.56 -24.59 -0.14 -2.96 16 18 C 0.25 5.80 0.85 -89.94 -0.08 5.72 16 19 O -0.59 -14.44 13.06 -35.23 -0.46 -14.90 16 20 C -0.53 -13.63 8.22 -34.44 -0.28 -13.91 16 21 H 0.06 1.65 7.56 -52.48 -0.40 1.25 16 22 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 23 N -0.90 -22.53 10.69 55.43 0.59 -21.93 16 24 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 28 C 0.12 2.67 6.23 -3.06 -0.02 2.65 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.94 7.71 -51.93 -0.40 0.54 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.41 4.94 7.22 -40.82 -0.29 4.64 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.07 0.73 8.10 -51.93 -0.42 0.30 16 44 H 0.06 0.96 6.95 -51.93 -0.36 0.60 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 47 H 0.09 1.92 7.64 -51.93 -0.40 1.53 16 48 H 0.38 9.49 7.28 45.56 0.33 9.82 16 49 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 50 H 0.06 1.44 8.07 -51.93 -0.42 1.02 16 51 H 0.07 1.62 7.66 -51.93 -0.40 1.22 16 LS Contribution 399.51 15.07 6.02 6.02 Total: -1.00 -28.52 399.51 -9.20 -37.71 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -8.11 Total: 14.71 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.55 Total: 4.31 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -0.25 Total: -43.34 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.28 Total: -34.29 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.52 -9.20 -37.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.621 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds