Wall clock time and date at job start Tue Mar 31 2020 21:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47041 * 2 1 4 4 N 1.46501 * 109.47505 * 240.00244 * 2 1 3 5 5 C 1.34767 * 120.00196 * 84.99668 * 4 2 1 6 6 O 1.21287 * 120.00208 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00030 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46771 * 299.99764 * 7 5 4 9 9 C 1.53006 * 109.46821 * 180.02562 * 8 7 5 10 10 C 1.52988 * 109.47130 * 60.00116 * 9 8 7 11 11 C 1.53001 * 109.47619 * 299.99969 * 10 9 8 12 12 C 1.52999 * 109.46904 * 180.02562 * 7 5 4 13 13 C 1.50702 * 109.47195 * 119.99748 * 2 1 3 14 14 O 1.21279 * 119.99855 * 93.45796 * 13 2 1 15 15 N 1.34778 * 120.00131 * 273.46071 * 13 2 1 16 16 C 1.47422 * 125.64829 * 355.05286 * 15 13 2 17 17 C 1.54906 * 104.83349 * 155.83795 * 16 15 13 18 18 C 1.55155 * 101.58216 * 37.00460 * 17 16 15 19 19 O 1.42904 * 110.71478 * 82.86435 * 18 17 16 20 20 C 1.50699 * 110.72068 * 205.95850 * 18 17 16 21 21 H 1.08003 * 119.99876 * 116.16173 * 20 18 17 22 22 C 1.37878 * 120.00138 * 296.15851 * 20 18 17 23 23 N 1.31520 * 119.99810 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 120.00077 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47035 * 90.00191 * 24 22 20 26 26 H 1.48497 * 109.46768 * 210.00097 * 24 22 20 27 27 H 1.48496 * 109.46818 * 330.00025 * 24 22 20 28 28 C 1.47020 * 125.64505 * 175.00889 * 15 13 2 29 29 H 1.08996 * 109.47056 * 174.75892 * 1 2 3 30 30 H 1.08999 * 109.47801 * 294.76413 * 1 2 3 31 31 H 1.09005 * 109.47237 * 54.76493 * 1 2 3 32 32 H 0.96999 * 119.99375 * 265.00101 * 4 2 1 33 33 H 1.08991 * 109.47258 * 60.00082 * 7 5 4 34 34 H 1.08991 * 109.47489 * 300.00176 * 8 7 5 35 35 H 1.09002 * 109.46864 * 60.00205 * 8 7 5 36 36 H 1.09003 * 109.46923 * 299.99938 * 9 8 7 37 37 H 1.08993 * 109.46679 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47095 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47363 * 60.00091 * 10 9 8 40 40 H 1.09003 * 109.46853 * 300.00435 * 11 10 9 41 41 H 1.09002 * 109.47310 * 180.02562 * 11 10 9 42 42 H 1.09004 * 109.47184 * 299.99670 * 12 7 5 43 43 H 1.09003 * 109.47702 * 59.99872 * 12 7 5 44 44 H 1.09001 * 110.36773 * 36.99646 * 16 15 13 45 45 H 1.09005 * 110.36326 * 274.67489 * 16 15 13 46 46 H 1.09004 * 110.99990 * 278.93425 * 17 16 15 47 47 H 1.09002 * 111.03893 * 155.09955 * 17 16 15 48 48 H 0.96696 * 114.00426 * 61.45813 * 19 18 17 49 49 H 0.97003 * 119.99844 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.88422 * 61.68263 * 28 15 13 51 51 H 1.08990 * 109.88683 * 300.50826 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8590 1.1587 -2.4115 7 6 2.6490 -0.7288 -3.5877 8 6 4.0515 -1.2796 -3.3221 9 6 4.5613 -2.0005 -4.5717 10 6 4.6130 -1.0169 -5.7424 11 6 3.2105 -0.4660 -6.0080 12 6 2.7011 0.2546 -4.7587 13 6 2.0323 -0.7104 1.2305 14 8 2.2942 -1.8936 1.1832 15 7 2.1905 -0.0308 2.3836 16 6 2.0101 1.4221 2.5563 17 6 1.6874 1.6057 4.0602 18 6 2.6016 0.5325 4.7082 19 8 3.9310 1.0316 4.8695 20 6 2.0392 0.0816 6.0316 21 1 1.7227 -0.9426 6.1630 22 6 1.9288 0.9765 7.0747 23 7 2.3139 2.2239 6.9145 24 14 1.2323 0.4174 8.7153 25 1 2.3354 -0.0730 9.5800 26 1 0.5528 1.5587 9.3793 27 1 0.2550 -0.6779 8.4907 28 6 2.5708 -0.6158 3.6777 29 1 -0.3633 -1.0233 -0.0939 30 1 -0.3635 0.4305 0.9331 31 1 -0.3634 0.5929 -0.8394 32 1 2.2491 -1.6317 -1.1526 33 1 1.9762 -1.5505 -3.8326 34 1 4.7243 -0.4579 -3.0772 35 1 4.0147 -1.9800 -2.4877 36 1 3.8886 -2.8223 -4.8170 37 1 5.5602 -2.3932 -4.3823 38 1 4.9766 -1.5303 -6.6325 39 1 5.2857 -0.1951 -5.4972 40 1 2.5378 -1.2878 -6.2533 41 1 3.2473 0.2344 -6.8424 42 1 1.7021 0.6474 -4.9480 43 1 3.3742 1.0762 -4.5136 44 1 1.1808 1.7768 1.9443 45 1 2.9272 1.9516 2.2977 46 1 0.6367 1.3976 4.2625 47 1 1.9578 2.6057 4.3992 48 1 3.9937 1.8039 5.4479 49 1 2.2358 2.8536 7.6482 50 1 3.5574 -1.0728 3.6023 51 1 1.8358 -1.3628 3.9771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:37 Heat of formation + Delta-G solvation = -167.893904 kcal Electronic energy + Delta-G solvation = -30451.910021 eV Core-core repulsion = 26348.978815 eV Total energy + Delta-G solvation = -4102.931206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76638 -40.86392 -39.21156 -38.48180 -36.19403 -36.10459 -34.18839 -32.96133 -31.69375 -31.57781 -30.82244 -30.01760 -27.30586 -25.78105 -24.50230 -23.59815 -23.32574 -21.68756 -21.34204 -20.73941 -20.36141 -19.20112 -18.79292 -17.74828 -17.42433 -16.96561 -16.73719 -16.57842 -16.10997 -15.99159 -15.74565 -15.31990 -15.10214 -14.99582 -14.86192 -14.76318 -14.10556 -13.89055 -13.74248 -13.66166 -13.57581 -13.23871 -13.21066 -13.18595 -13.13486 -13.04368 -12.75255 -12.67138 -12.46558 -12.26928 -12.23503 -12.03714 -12.01149 -11.55789 -11.35127 -11.31063 -11.06416 -10.99245 -10.73156 -10.63064 -10.29945 -10.14794 -9.73731 -8.25599 -6.39409 1.31138 1.41608 1.45054 1.52782 1.54981 1.69239 2.26568 2.39688 2.99940 3.25515 3.56384 3.73219 3.78061 3.82508 3.92054 3.96428 4.00142 4.21364 4.25456 4.27874 4.31338 4.33602 4.45648 4.53175 4.55081 4.59531 4.59947 4.60783 4.69567 4.71437 4.86040 4.97547 5.07160 5.11287 5.11894 5.14652 5.16910 5.25085 5.25560 5.27483 5.36832 5.41024 5.42590 5.50494 5.56688 5.75499 6.05802 6.41822 6.43703 6.63891 6.90117 7.12498 7.30659 7.40717 8.80816 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027354 B = 0.002233 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.385421 B =12536.493985 C =12698.794575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.136 3.864 3 H 0.104 0.896 4 N -0.710 5.710 5 C 0.519 3.481 6 O -0.574 6.574 7 C -0.097 4.097 8 C -0.112 4.112 9 C -0.114 4.114 10 C -0.122 4.122 11 C -0.114 4.114 12 C -0.097 4.097 13 C 0.521 3.479 14 O -0.575 6.575 15 N -0.604 5.604 16 C 0.099 3.901 17 C -0.126 4.126 18 C 0.234 3.766 19 O -0.594 6.594 20 C -0.560 4.560 21 H 0.054 0.946 22 C 0.037 3.963 23 N -0.907 5.907 24 Si 0.959 3.041 25 H -0.279 1.279 26 H -0.278 1.278 27 H -0.273 1.273 28 C 0.130 3.870 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.414 0.586 33 H 0.120 0.880 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.381 0.619 49 H 0.272 0.728 50 H 0.045 0.955 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.891 -3.952 -22.589 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.027 3.973 3 H 0.122 0.878 4 N -0.364 5.364 5 C 0.307 3.693 6 O -0.453 6.453 7 C -0.118 4.118 8 C -0.150 4.150 9 C -0.151 4.151 10 C -0.160 4.160 11 C -0.152 4.152 12 C -0.135 4.135 13 C 0.310 3.690 14 O -0.456 6.456 15 N -0.336 5.336 16 C -0.023 4.023 17 C -0.165 4.165 18 C 0.194 3.806 19 O -0.404 6.404 20 C -0.598 4.598 21 H 0.072 0.928 22 C -0.165 4.165 23 N -0.546 5.546 24 Si 0.785 3.215 25 H -0.205 1.205 26 H -0.203 1.203 27 H -0.197 1.197 28 C 0.007 3.993 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.252 0.748 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.117 0.883 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.231 0.769 49 H 0.081 0.919 50 H 0.064 0.936 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.812 -4.092 -23.020 23.395 hybrid contribution -0.186 0.022 1.971 1.980 sum -0.998 -4.069 -21.049 21.462 Atomic orbital electron populations 1.22023 0.90955 1.03695 1.04012 1.20672 0.96995 0.97222 0.82405 0.87767 1.45899 1.67164 1.15023 1.08279 1.21330 0.76122 0.86918 0.84930 1.90679 1.51578 1.17473 1.85545 1.21392 0.99171 0.99759 0.91450 1.21556 0.93787 1.00113 0.99540 1.21517 1.01863 0.98188 0.93574 1.21582 0.96933 0.98880 0.98597 1.21531 0.96903 1.00320 0.96412 1.21318 1.01641 0.96914 0.93639 1.20658 0.77452 0.86786 0.84100 1.90633 1.53241 1.16838 1.84891 1.48612 1.66393 1.10132 1.08451 1.22598 1.01752 0.79330 0.98603 1.23109 1.00205 1.01143 0.91997 1.19617 0.80463 0.89088 0.91389 1.86109 1.30488 1.51884 1.71894 1.21714 1.43270 0.97038 0.97809 0.92770 1.25588 0.94438 0.94796 1.01638 1.69702 1.47463 1.03696 1.33715 0.85542 0.78435 0.78030 0.79512 1.20517 1.20321 1.19740 1.21839 0.98731 0.96579 0.82153 0.91210 0.90374 0.90145 0.74828 0.86217 0.92742 0.91214 0.90458 0.91109 0.90568 0.92687 0.90689 0.91058 0.91982 0.92979 0.88320 0.91287 0.91791 0.90327 0.76854 0.91867 0.93607 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.43 71.98 0.68 -2.81 16 2 C 0.14 3.74 2.29 44.24 0.10 3.84 16 3 H 0.10 2.99 6.61 -2.38 -0.02 2.97 16 4 N -0.71 -17.33 4.95 -446.09 -2.21 -19.53 16 5 C 0.52 12.51 7.12 87.66 0.62 13.14 16 6 O -0.57 -17.70 15.64 -3.05 -0.05 -17.75 16 7 C -0.10 -1.63 2.53 -11.54 -0.03 -1.66 16 8 C -0.11 -1.75 5.10 30.60 0.16 -1.60 16 9 C -0.11 -1.31 5.92 30.59 0.18 -1.13 16 10 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 11 C -0.11 -1.32 5.92 30.58 0.18 -1.14 16 12 C -0.10 -1.63 4.49 30.58 0.14 -1.50 16 13 C 0.52 18.10 7.04 87.66 0.62 18.71 16 14 O -0.58 -22.67 16.37 -3.03 -0.05 -22.72 16 15 N -0.60 -22.67 3.33 -811.82 -2.70 -25.37 16 16 C 0.10 3.38 6.35 86.85 0.55 3.93 16 17 C -0.13 -5.20 5.56 31.98 0.18 -5.02 16 18 C 0.23 11.12 0.85 -10.35 -0.01 11.11 16 19 O -0.59 -29.81 13.06 -148.98 -1.95 -31.75 16 20 C -0.56 -28.93 8.22 25.60 0.21 -28.72 16 21 H 0.05 2.83 7.56 -2.91 -0.02 2.81 16 22 C 0.04 1.85 5.29 84.65 0.45 2.30 16 23 N -0.91 -45.51 10.69 21.45 0.23 -45.28 16 24 Si 0.96 40.66 29.54 68.60 2.03 42.69 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 26 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 28 C 0.13 5.74 6.23 86.73 0.54 6.28 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 1.78 7.71 -2.39 -0.02 1.76 16 31 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.41 9.44 7.22 -92.71 -0.67 8.77 16 33 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.10 7.56 -2.39 -0.02 1.08 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 1.13 8.10 -2.38 -0.02 1.11 16 43 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 44 H 0.10 2.71 6.95 -2.39 -0.02 2.70 16 45 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 46 H 0.06 2.68 8.04 -2.38 -0.02 2.66 16 47 H 0.08 3.40 7.64 -2.39 -0.02 3.38 16 48 H 0.38 19.18 7.28 -74.06 -0.54 18.64 16 49 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 50 H 0.05 2.15 8.07 -2.39 -0.02 2.13 16 51 H 0.07 3.00 7.66 -2.39 -0.02 2.98 16 Total: -1.00 -60.94 399.51 -0.22 -61.16 By element: Atomic # 1 Polarization: 44.26 SS G_CDS: -0.28 Total: 43.98 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 4.75 Total: 14.58 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -4.68 Total: -90.19 kcal Atomic # 8 Polarization: -70.18 SS G_CDS: -2.04 Total: -72.23 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -60.94 -0.22 -61.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.730 kcal (2) G-P(sol) polarization free energy of solvation -60.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds