Wall clock time and date at job start Tue Mar 31 2020 21:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47288 * 2 1 4 4 N 1.46509 * 109.46875 * 119.99964 * 2 1 3 5 5 C 1.34775 * 119.99875 * 274.99758 * 4 2 1 6 6 O 1.21285 * 119.99985 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99949 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47115 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47104 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47310 * 59.99659 * 9 8 7 11 11 C 1.52999 * 109.46838 * 299.99800 * 10 9 8 12 12 C 1.52998 * 109.47150 * 60.00054 * 7 5 4 13 13 C 1.50696 * 109.47377 * 239.99379 * 2 1 3 14 14 O 1.21281 * 120.00507 * 266.67386 * 13 2 1 15 15 N 1.34779 * 119.99670 * 86.66355 * 13 2 1 16 16 C 1.47422 * 125.64758 * 185.04568 * 15 13 2 17 17 C 1.54908 * 104.83255 * 204.09683 * 16 15 13 18 18 C 1.55159 * 101.58218 * 322.99177 * 17 16 15 19 19 O 1.42907 * 110.71707 * 277.13864 * 18 17 16 20 20 C 1.50696 * 110.72209 * 154.04289 * 18 17 16 21 21 H 1.08002 * 119.99982 * 241.45803 * 20 18 17 22 22 C 1.37877 * 120.00152 * 61.45340 * 20 18 17 23 23 N 1.31514 * 120.00068 * 359.97438 * 22 20 18 24 24 Si 1.86803 * 120.00055 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46995 * 90.00123 * 24 22 20 26 26 H 1.48499 * 109.46946 * 209.99824 * 24 22 20 27 27 H 1.48498 * 109.47096 * 329.99616 * 24 22 20 28 28 C 1.47019 * 125.64735 * 4.74644 * 15 13 2 29 29 H 1.08996 * 109.46448 * 57.20454 * 1 2 3 30 30 H 1.08996 * 109.46862 * 177.20757 * 1 2 3 31 31 H 1.08994 * 109.46866 * 297.20668 * 1 2 3 32 32 H 0.96994 * 119.99832 * 95.00116 * 4 2 1 33 33 H 1.09002 * 109.47041 * 299.99473 * 7 5 4 34 34 H 1.08995 * 109.47589 * 59.99564 * 8 7 5 35 35 H 1.09002 * 109.46489 * 299.99508 * 8 7 5 36 36 H 1.08994 * 109.46822 * 179.97438 * 9 8 7 37 37 H 1.08998 * 109.46460 * 299.99298 * 9 8 7 38 38 H 1.09003 * 109.47101 * 59.99911 * 10 9 8 39 39 H 1.08997 * 109.47078 * 180.02562 * 10 9 8 40 40 H 1.09008 * 109.46853 * 180.02562 * 11 10 9 41 41 H 1.08999 * 109.47765 * 300.00231 * 11 10 9 42 42 H 1.08999 * 109.47131 * 60.00334 * 12 7 5 43 43 H 1.08994 * 109.47218 * 299.99722 * 12 7 5 44 44 H 1.09008 * 110.36947 * 322.93518 * 16 15 13 45 45 H 1.08992 * 110.37172 * 85.14737 * 16 15 13 46 46 H 1.09003 * 111.00443 * 81.06489 * 17 16 15 47 47 H 1.09004 * 111.00582 * 204.91889 * 17 16 15 48 48 H 0.96696 * 113.99847 * 298.54540 * 19 18 17 49 49 H 0.96996 * 120.00171 * 179.97438 * 23 22 20 50 50 H 1.09006 * 109.87929 * 298.38342 * 28 15 13 51 51 H 1.08994 * 109.88540 * 59.55276 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1963 5 6 2.1471 -0.0183 2.3572 6 8 1.8582 1.1584 2.4117 7 6 2.6499 -0.7285 3.5875 8 6 2.7007 0.2545 4.7589 9 6 3.2118 -0.4665 6.0079 10 6 4.6148 -1.0155 5.7416 11 6 4.5639 -1.9985 4.5703 12 6 4.0526 -1.2785 3.3215 13 6 2.0324 -0.7105 -1.2303 14 8 2.2921 -1.8943 -1.1836 15 7 2.1930 -0.0304 -2.3828 16 6 2.5735 -0.6170 -3.6807 17 6 3.2135 0.5512 -4.4715 18 6 2.3302 1.7477 -4.0290 19 8 1.1289 1.8020 -4.8010 20 6 3.0923 3.0429 -4.1404 21 1 3.2734 3.6405 -3.2592 22 6 3.5586 3.4651 -5.3674 23 7 3.3386 2.7372 -6.4404 24 14 4.5039 5.0704 -5.5054 25 1 5.9541 4.8081 -5.3227 26 1 4.2737 5.6667 -6.8458 27 1 4.0353 6.0125 -4.4575 28 6 2.0117 1.4183 -2.5552 29 1 -0.3632 0.5566 -0.8639 30 1 -0.3633 -1.0264 -0.0501 31 1 -0.3633 0.4698 0.9139 32 1 2.2490 -1.6318 1.1527 33 1 1.9776 -1.5507 3.8326 34 1 1.7013 0.6460 4.9483 35 1 3.3727 1.0770 4.5140 36 1 3.2483 0.2339 6.8422 37 1 2.5400 -1.2891 6.2529 38 1 5.2865 -0.1928 5.4966 39 1 4.9787 -1.5295 6.6313 40 1 5.5634 -2.3901 4.3809 41 1 3.8922 -2.8213 4.8153 42 1 4.7248 -0.4562 3.0764 43 1 4.0160 -1.9789 2.4871 44 1 3.2974 -1.4193 -3.5369 45 1 1.6919 -0.9914 -4.2009 46 1 4.2516 0.7013 -4.1751 47 1 3.1358 0.3846 -5.5459 48 1 1.2756 1.9290 -5.7483 49 1 3.6663 3.0344 -7.3036 50 1 0.9820 1.6929 -2.3262 51 1 2.6959 1.9580 -1.9005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:41 Heat of formation + Delta-G solvation = -149.929349 kcal Electronic energy + Delta-G solvation = -30616.912992 eV Core-core repulsion = 26514.760788 eV Total energy + Delta-G solvation = -4102.152205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56774 -39.56471 -37.89761 -37.33619 -34.90141 -34.37008 -32.27586 -32.03277 -30.99008 -30.48927 -29.34436 -28.35862 -25.32617 -24.81280 -23.58459 -22.81082 -21.78317 -20.47886 -20.00797 -19.87880 -19.01272 -17.69931 -17.14642 -16.51924 -15.95080 -15.70972 -15.50632 -15.01827 -14.82849 -14.70974 -14.38949 -14.32182 -14.14078 -13.86438 -13.81546 -13.03236 -12.90993 -12.82617 -12.52927 -12.45992 -12.42542 -12.11486 -11.97399 -11.92089 -11.58220 -11.48872 -11.39552 -11.39191 -11.31119 -10.90636 -10.90444 -10.68938 -10.60980 -10.53104 -10.37574 -10.18281 -9.77625 -9.69281 -9.39974 -9.10704 -8.73261 -8.28826 -8.15770 -6.34094 -4.42353 2.55557 2.75586 2.98582 3.16904 3.24875 3.28648 3.55793 4.21718 4.37314 4.41669 4.46141 4.67979 4.90369 4.91308 4.93261 4.98414 5.12342 5.15572 5.19546 5.20996 5.24656 5.35147 5.52144 5.55215 5.61483 5.73971 5.75742 5.79243 5.82066 5.83004 5.87960 5.91175 5.95439 5.97065 6.04926 6.10641 6.17791 6.18184 6.26764 6.37505 6.51662 6.82300 6.86812 7.23278 7.29642 7.47665 7.67345 7.88307 7.96719 8.18709 8.37814 8.59825 9.23150 9.32456 10.73445 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.002628 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.097667 B =10651.148650 C =11347.038144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 H 0.109 0.891 4 N -0.713 5.713 5 C 0.518 3.482 6 O -0.538 6.538 7 C -0.103 4.103 8 C -0.099 4.099 9 C -0.119 4.119 10 C -0.122 4.122 11 C -0.117 4.117 12 C -0.114 4.114 13 C 0.523 3.477 14 O -0.558 6.558 15 N -0.600 5.600 16 C 0.103 3.897 17 C -0.135 4.135 18 C 0.249 3.751 19 O -0.586 6.586 20 C -0.537 4.537 21 H 0.065 0.935 22 C 0.073 3.927 23 N -0.895 5.895 24 Si 0.903 3.097 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.108 3.892 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.408 0.592 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.384 0.616 49 H 0.269 0.731 50 H 0.066 0.934 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -8.651 17.820 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.019 3.981 3 H 0.127 0.873 4 N -0.367 5.367 5 C 0.304 3.696 6 O -0.415 6.415 7 C -0.124 4.124 8 C -0.137 4.137 9 C -0.157 4.157 10 C -0.160 4.160 11 C -0.155 4.155 12 C -0.151 4.151 13 C 0.310 3.690 14 O -0.438 6.438 15 N -0.332 5.332 16 C -0.019 4.019 17 C -0.174 4.174 18 C 0.209 3.791 19 O -0.395 6.395 20 C -0.575 4.575 21 H 0.083 0.917 22 C -0.130 4.130 23 N -0.533 5.533 24 Si 0.730 3.270 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.196 1.196 28 C -0.014 4.014 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.245 0.755 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.108 0.892 48 H 0.234 0.766 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.661 -8.538 18.317 20.220 hybrid contribution 0.903 0.504 -0.927 1.389 sum 0.242 -8.034 17.390 19.158 Atomic orbital electron populations 1.22027 0.92630 1.02928 1.03622 1.20765 0.95916 0.98067 0.83349 0.87280 1.45868 1.67354 1.14769 1.08702 1.20711 0.77185 0.87285 0.84370 1.90710 1.49888 1.15902 1.84971 1.21340 0.98420 0.99440 0.93250 1.21351 1.02460 0.97260 0.92652 1.21558 0.96595 0.99994 0.97535 1.21574 0.97263 0.99080 0.98080 1.21513 1.01326 0.98052 0.94563 1.21550 0.94628 1.00528 0.98436 1.20074 0.78161 0.86888 0.83864 1.90631 1.52873 1.15625 1.84688 1.48605 1.65842 1.10071 1.08650 1.22435 0.99080 0.97611 0.82794 1.23324 0.99624 0.94061 1.00347 1.19428 0.82352 0.92680 0.84658 1.86115 1.33152 1.95970 1.24237 1.21478 1.35282 1.06145 0.94617 0.91718 1.24983 0.95081 0.97392 0.95516 1.69690 1.46296 1.38087 0.99276 0.86411 0.79947 0.82978 0.77643 1.20463 1.20987 1.19625 1.22311 1.00894 0.78360 0.99838 0.90612 0.91892 0.90960 0.75524 0.88523 0.91194 0.91070 0.91696 0.91973 0.91822 0.92025 0.91594 0.91760 0.91200 0.91194 0.91761 0.91949 0.91466 0.89218 0.76600 0.92136 0.91545 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.47 37.16 0.35 -1.73 16 2 C 0.13 1.94 2.55 -69.08 -0.18 1.76 16 3 H 0.11 1.79 6.63 -51.93 -0.34 1.44 16 4 N -0.71 -9.46 4.95 -54.93 -0.27 -9.73 16 5 C 0.52 6.83 7.12 -10.99 -0.08 6.75 16 6 O -0.54 -8.94 15.65 5.55 0.09 -8.85 16 7 C -0.10 -0.99 2.53 -91.77 -0.23 -1.22 16 8 C -0.10 -0.94 4.49 -26.73 -0.12 -1.06 16 9 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 10 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 11 C -0.12 -0.83 5.92 -26.75 -0.16 -0.99 16 12 C -0.11 -1.00 5.10 -26.75 -0.14 -1.13 16 13 C 0.52 9.32 7.04 -10.99 -0.08 9.24 16 14 O -0.56 -10.83 16.27 5.56 0.09 -10.74 16 15 N -0.60 -11.43 3.33 -170.52 -0.57 -12.00 16 16 C 0.10 1.99 6.92 -2.53 -0.02 1.97 16 17 C -0.13 -2.90 5.47 -24.58 -0.13 -3.03 16 18 C 0.25 5.72 0.84 -89.93 -0.08 5.64 16 19 O -0.59 -14.01 13.06 -35.23 -0.46 -14.47 16 20 C -0.54 -13.48 8.23 -34.44 -0.28 -13.76 16 21 H 0.06 1.62 7.58 -52.49 -0.40 1.22 16 22 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 23 N -0.89 -22.45 10.67 55.43 0.59 -21.86 16 24 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 28 C 0.11 2.17 5.48 -3.06 -0.02 2.15 16 29 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.41 4.99 7.22 -40.82 -0.29 4.70 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.61 7.56 -51.93 -0.39 0.21 16 44 H 0.06 1.20 7.99 -51.92 -0.41 0.79 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 47 H 0.09 2.01 7.53 -51.93 -0.39 1.62 16 48 H 0.38 9.27 7.46 45.56 0.34 9.61 16 49 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 50 H 0.07 1.29 7.65 -51.93 -0.40 0.89 16 51 H 0.08 1.48 7.43 -51.93 -0.39 1.10 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -28.03 399.95 -9.21 -37.24 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -8.12 Total: 15.28 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -1.57 Total: 4.30 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.25 Total: -43.59 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.28 Total: -34.06 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.03 -9.21 -37.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.687 kcal (2) G-P(sol) polarization free energy of solvation -28.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds