Wall clock time and date at job start Tue Mar 31 2020 21:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47288 * 2 1 4 4 N 1.46509 * 109.46875 * 119.99964 * 2 1 3 5 5 C 1.34775 * 119.99875 * 274.99758 * 4 2 1 6 6 O 1.21285 * 119.99985 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99949 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47115 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47104 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47310 * 59.99659 * 9 8 7 11 11 C 1.52999 * 109.46838 * 299.99800 * 10 9 8 12 12 C 1.52998 * 109.47150 * 60.00054 * 7 5 4 13 13 C 1.50696 * 109.47377 * 239.99379 * 2 1 3 14 14 O 1.21281 * 120.00507 * 266.67386 * 13 2 1 15 15 N 1.34779 * 119.99670 * 86.66355 * 13 2 1 16 16 C 1.47422 * 125.64758 * 185.04568 * 15 13 2 17 17 C 1.54908 * 104.83255 * 204.09683 * 16 15 13 18 18 C 1.55159 * 101.58218 * 322.99177 * 17 16 15 19 19 O 1.42907 * 110.71707 * 277.13864 * 18 17 16 20 20 C 1.50696 * 110.72209 * 154.04289 * 18 17 16 21 21 H 1.08002 * 119.99982 * 241.45803 * 20 18 17 22 22 C 1.37877 * 120.00152 * 61.45340 * 20 18 17 23 23 N 1.31514 * 120.00068 * 359.97438 * 22 20 18 24 24 Si 1.86803 * 120.00055 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46995 * 90.00123 * 24 22 20 26 26 H 1.48499 * 109.46946 * 209.99824 * 24 22 20 27 27 H 1.48498 * 109.47096 * 329.99616 * 24 22 20 28 28 C 1.47019 * 125.64735 * 4.74644 * 15 13 2 29 29 H 1.08996 * 109.46448 * 57.20454 * 1 2 3 30 30 H 1.08996 * 109.46862 * 177.20757 * 1 2 3 31 31 H 1.08994 * 109.46866 * 297.20668 * 1 2 3 32 32 H 0.96994 * 119.99832 * 95.00116 * 4 2 1 33 33 H 1.09002 * 109.47041 * 299.99473 * 7 5 4 34 34 H 1.08995 * 109.47589 * 59.99564 * 8 7 5 35 35 H 1.09002 * 109.46489 * 299.99508 * 8 7 5 36 36 H 1.08994 * 109.46822 * 179.97438 * 9 8 7 37 37 H 1.08998 * 109.46460 * 299.99298 * 9 8 7 38 38 H 1.09003 * 109.47101 * 59.99911 * 10 9 8 39 39 H 1.08997 * 109.47078 * 180.02562 * 10 9 8 40 40 H 1.09008 * 109.46853 * 180.02562 * 11 10 9 41 41 H 1.08999 * 109.47765 * 300.00231 * 11 10 9 42 42 H 1.08999 * 109.47131 * 60.00334 * 12 7 5 43 43 H 1.08994 * 109.47218 * 299.99722 * 12 7 5 44 44 H 1.09008 * 110.36947 * 322.93518 * 16 15 13 45 45 H 1.08992 * 110.37172 * 85.14737 * 16 15 13 46 46 H 1.09003 * 111.00443 * 81.06489 * 17 16 15 47 47 H 1.09004 * 111.00582 * 204.91889 * 17 16 15 48 48 H 0.96696 * 113.99847 * 298.54540 * 19 18 17 49 49 H 0.96996 * 120.00171 * 179.97438 * 23 22 20 50 50 H 1.09006 * 109.87929 * 298.38342 * 28 15 13 51 51 H 1.08994 * 109.88540 * 59.55276 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1963 5 6 2.1471 -0.0183 2.3572 6 8 1.8582 1.1584 2.4117 7 6 2.6499 -0.7285 3.5875 8 6 2.7007 0.2545 4.7589 9 6 3.2118 -0.4665 6.0079 10 6 4.6148 -1.0155 5.7416 11 6 4.5639 -1.9985 4.5703 12 6 4.0526 -1.2785 3.3215 13 6 2.0324 -0.7105 -1.2303 14 8 2.2921 -1.8943 -1.1836 15 7 2.1930 -0.0304 -2.3828 16 6 2.5735 -0.6170 -3.6807 17 6 3.2135 0.5512 -4.4715 18 6 2.3302 1.7477 -4.0290 19 8 1.1289 1.8020 -4.8010 20 6 3.0923 3.0429 -4.1404 21 1 3.2734 3.6405 -3.2592 22 6 3.5586 3.4651 -5.3674 23 7 3.3386 2.7372 -6.4404 24 14 4.5039 5.0704 -5.5054 25 1 5.9541 4.8081 -5.3227 26 1 4.2737 5.6667 -6.8458 27 1 4.0353 6.0125 -4.4575 28 6 2.0117 1.4183 -2.5552 29 1 -0.3632 0.5566 -0.8639 30 1 -0.3633 -1.0264 -0.0501 31 1 -0.3633 0.4698 0.9139 32 1 2.2490 -1.6318 1.1527 33 1 1.9776 -1.5507 3.8326 34 1 1.7013 0.6460 4.9483 35 1 3.3727 1.0770 4.5140 36 1 3.2483 0.2339 6.8422 37 1 2.5400 -1.2891 6.2529 38 1 5.2865 -0.1928 5.4966 39 1 4.9787 -1.5295 6.6313 40 1 5.5634 -2.3901 4.3809 41 1 3.8922 -2.8213 4.8153 42 1 4.7248 -0.4562 3.0764 43 1 4.0160 -1.9789 2.4871 44 1 3.2974 -1.4193 -3.5369 45 1 1.6919 -0.9914 -4.2009 46 1 4.2516 0.7013 -4.1751 47 1 3.1358 0.3846 -5.5459 48 1 1.2756 1.9290 -5.7483 49 1 3.6663 3.0344 -7.3036 50 1 0.9820 1.6929 -2.3262 51 1 2.6959 1.9580 -1.9005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:40 Heat of formation + Delta-G solvation = -167.808273 kcal Electronic energy + Delta-G solvation = -30617.688280 eV Core-core repulsion = 26514.760788 eV Total energy + Delta-G solvation = -4102.927493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76941 -40.86771 -39.21360 -38.48832 -36.17481 -36.05769 -34.20092 -33.03139 -31.76043 -31.60632 -30.69246 -30.02842 -27.05590 -26.07697 -24.66113 -23.51378 -23.09353 -21.78438 -21.41004 -20.74054 -20.34268 -19.25231 -18.65205 -17.88346 -17.25728 -16.92526 -16.90890 -16.60216 -16.14767 -15.91352 -15.74709 -15.31171 -15.10860 -14.99615 -14.81762 -14.76673 -14.11281 -13.93668 -13.73135 -13.65529 -13.50583 -13.44477 -13.22656 -13.17631 -13.08051 -13.04182 -12.76319 -12.65940 -12.40556 -12.27521 -12.23434 -12.03739 -12.01259 -11.55870 -11.35572 -11.34727 -11.05820 -10.99383 -10.73378 -10.63475 -10.29364 -10.14439 -9.73165 -8.24637 -6.38877 1.30159 1.41715 1.45553 1.53340 1.54870 1.69164 2.26281 2.39648 3.01143 3.24380 3.56025 3.73043 3.75629 3.78294 3.96584 3.97941 4.06257 4.14713 4.24627 4.27817 4.31290 4.32528 4.45291 4.49708 4.55425 4.59246 4.59939 4.62532 4.69341 4.71001 4.84243 4.97619 5.04168 5.11858 5.11956 5.14946 5.17010 5.24943 5.25488 5.27383 5.36648 5.40973 5.42306 5.48945 5.56703 5.75765 6.04312 6.39966 6.42745 6.65824 6.88488 7.13577 7.30648 7.39056 8.81319 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.002628 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.097667 B =10651.148650 C =11347.038144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.132 3.868 3 H 0.097 0.903 4 N -0.708 5.708 5 C 0.517 3.483 6 O -0.576 6.576 7 C -0.096 4.096 8 C -0.098 4.098 9 C -0.114 4.114 10 C -0.123 4.123 11 C -0.113 4.113 12 C -0.112 4.112 13 C 0.526 3.474 14 O -0.571 6.571 15 N -0.604 5.604 16 C 0.110 3.890 17 C -0.124 4.124 18 C 0.236 3.764 19 O -0.590 6.590 20 C -0.559 4.559 21 H 0.058 0.942 22 C 0.036 3.964 23 N -0.907 5.907 24 Si 0.957 3.043 25 H -0.277 1.277 26 H -0.281 1.281 27 H -0.273 1.273 28 C 0.118 3.882 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.415 0.585 33 H 0.122 0.878 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.054 0.946 47 H 0.077 0.923 48 H 0.380 0.620 49 H 0.271 0.729 50 H 0.073 0.927 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 -9.759 19.380 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 H 0.114 0.886 4 N -0.362 5.362 5 C 0.305 3.695 6 O -0.455 6.455 7 C -0.117 4.117 8 C -0.136 4.136 9 C -0.151 4.151 10 C -0.160 4.160 11 C -0.151 4.151 12 C -0.150 4.150 13 C 0.315 3.685 14 O -0.451 6.451 15 N -0.336 5.336 16 C -0.012 4.012 17 C -0.163 4.163 18 C 0.196 3.804 19 O -0.399 6.399 20 C -0.597 4.597 21 H 0.076 0.924 22 C -0.166 4.166 23 N -0.546 5.546 24 Si 0.783 3.217 25 H -0.203 1.203 26 H -0.206 1.206 27 H -0.198 1.198 28 C -0.004 4.004 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.253 0.747 33 H 0.140 0.860 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.096 0.904 48 H 0.229 0.771 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.585 -9.675 19.890 22.126 hybrid contribution 0.885 0.848 -1.427 1.881 sum 0.300 -8.828 18.463 20.467 Atomic orbital electron populations 1.21978 0.91139 1.03541 1.03795 1.20665 0.96962 0.97152 0.82927 0.88552 1.45857 1.67166 1.14993 1.08147 1.21396 0.76166 0.86912 0.85036 1.90694 1.51556 1.17675 1.85552 1.21391 0.99279 0.99726 0.91265 1.21334 1.01566 0.96950 0.93779 1.21536 0.96966 1.00317 0.96307 1.21587 0.96851 0.98898 0.98685 1.21510 1.01918 0.98167 0.93477 1.21549 0.93656 1.00123 0.99653 1.20456 0.77372 0.86718 0.83986 1.90623 1.53346 1.16237 1.84906 1.48600 1.66372 1.09586 1.09004 1.22312 0.99240 0.96833 0.82831 1.23101 0.98798 0.94550 0.99870 1.19589 0.82218 0.92540 0.86098 1.86107 1.33734 1.95997 1.24036 1.21730 1.36079 1.07223 0.94683 0.92352 1.25592 0.95770 0.99837 0.95356 1.69757 1.46495 1.38915 0.99442 0.85571 0.78781 0.79899 0.77452 1.20266 1.20643 1.19796 1.22104 1.01253 0.79035 0.97997 0.90827 0.90971 0.90432 0.74686 0.86035 0.92083 0.93169 0.91146 0.90554 0.92799 0.90483 0.91010 0.90324 0.92889 0.90976 0.90917 0.91567 0.92681 0.90409 0.77063 0.92000 0.90923 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.47 71.98 0.68 -3.11 16 2 C 0.13 3.91 2.55 44.24 0.11 4.02 16 3 H 0.10 3.16 6.63 -2.39 -0.02 3.14 16 4 N -0.71 -18.02 4.95 -446.08 -2.21 -20.22 16 5 C 0.52 13.26 7.12 87.66 0.62 13.88 16 6 O -0.58 -19.21 15.65 -3.05 -0.05 -19.26 16 7 C -0.10 -1.70 2.53 -11.54 -0.03 -1.72 16 8 C -0.10 -1.78 4.49 30.60 0.14 -1.64 16 9 C -0.11 -1.41 5.92 30.59 0.18 -1.22 16 10 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 11 C -0.11 -1.32 5.92 30.58 0.18 -1.14 16 12 C -0.11 -1.80 5.10 30.58 0.16 -1.64 16 13 C 0.53 18.22 7.04 87.66 0.62 18.83 16 14 O -0.57 -21.30 16.27 -3.03 -0.05 -21.35 16 15 N -0.60 -22.61 3.33 -811.78 -2.70 -25.31 16 16 C 0.11 4.20 6.92 86.86 0.60 4.80 16 17 C -0.12 -5.38 5.47 31.99 0.18 -5.21 16 18 C 0.24 10.87 0.84 -10.35 -0.01 10.86 16 19 O -0.59 -28.36 13.06 -148.98 -1.95 -30.30 16 20 C -0.56 -28.24 8.23 25.60 0.21 -28.03 16 21 H 0.06 2.95 7.58 -2.91 -0.02 2.92 16 22 C 0.04 1.80 5.28 84.65 0.45 2.24 16 23 N -0.91 -45.62 10.67 21.45 0.23 -45.39 16 24 Si 0.96 40.54 29.54 68.60 2.03 42.57 16 25 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 C 0.12 4.75 5.48 86.73 0.48 5.22 16 29 H 0.07 1.94 7.72 -2.39 -0.02 1.92 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.42 9.48 7.22 -92.71 -0.67 8.81 16 33 H 0.12 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 35 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.13 7.56 -2.39 -0.02 1.11 16 44 H 0.07 2.65 7.99 -2.38 -0.02 2.64 16 45 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 46 H 0.05 2.48 8.04 -2.39 -0.02 2.46 16 47 H 0.08 3.53 7.53 -2.39 -0.02 3.51 16 48 H 0.38 18.58 7.46 -74.06 -0.55 18.03 16 49 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 50 H 0.07 2.80 7.65 -2.38 -0.02 2.78 16 51 H 0.08 3.01 7.43 -2.39 -0.02 2.99 16 Total: -1.00 -58.93 399.95 -0.24 -59.17 By element: Atomic # 1 Polarization: 45.50 SS G_CDS: -0.29 Total: 45.21 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 4.74 Total: 14.90 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -4.68 Total: -90.93 kcal Atomic # 8 Polarization: -68.88 SS G_CDS: -2.04 Total: -70.92 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -58.93 -0.24 -59.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.636 kcal (2) G-P(sol) polarization free energy of solvation -58.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds