Wall clock time and date at job start Tue Mar 31 2020 21:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47274 * 2 1 4 4 N 1.46504 * 109.46966 * 119.99183 * 2 1 3 5 5 C 1.34779 * 120.00260 * 275.00134 * 4 2 1 6 6 O 1.21590 * 119.99563 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00214 * 180.02562 * 5 4 2 8 8 C 1.46492 * 119.99830 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46922 * 175.11006 * 8 7 5 10 10 C 1.50697 * 115.55407 * 40.33511 * 9 8 7 11 11 H 1.07997 * 120.00471 * 273.59374 * 10 9 8 12 12 C 1.37880 * 119.99691 * 93.58718 * 10 9 8 13 13 N 1.31516 * 120.00219 * 354.35657 * 12 10 9 14 14 Si 1.86798 * 119.99835 * 174.36235 * 12 10 9 15 15 H 1.48501 * 109.47184 * 59.99851 * 14 12 10 16 16 H 1.48507 * 109.47210 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46905 * 299.99521 * 14 12 10 18 18 C 1.53004 * 117.49820 * 254.62895 * 9 8 7 19 19 C 1.53001 * 60.00236 * 252.50998 * 18 9 8 20 20 C 1.52998 * 109.47510 * 239.99033 * 2 1 3 21 21 H 1.08994 * 112.85151 * 294.69604 * 20 2 1 22 22 C 1.53787 * 113.61385 * 163.38663 * 20 2 1 23 23 C 1.53781 * 87.07888 * 220.02139 * 22 20 2 24 24 H 1.08993 * 113.69086 * 270.87418 * 23 22 20 25 25 C 1.50709 * 113.60842 * 139.98510 * 23 22 20 26 26 O 1.20823 * 119.99835 * 262.50473 * 25 23 22 27 27 O 1.34226 * 120.00106 * 82.50504 * 25 23 22 28 28 C 1.53778 * 87.08395 * 25.43707 * 23 22 20 29 29 C 1.52995 * 113.61372 * 220.01724 * 28 23 22 30 30 C 1.53001 * 113.69092 * 89.12005 * 28 23 22 31 31 H 1.08996 * 109.46783 * 65.37579 * 1 2 3 32 32 H 1.08999 * 109.46814 * 185.37400 * 1 2 3 33 33 H 1.08995 * 109.47352 * 305.37503 * 1 2 3 34 34 H 0.97003 * 119.99907 * 95.00454 * 4 2 1 35 35 H 0.96997 * 119.99775 * 359.72220 * 7 5 4 36 36 H 1.09003 * 109.47453 * 295.10573 * 8 7 5 37 37 H 1.09004 * 109.47524 * 55.11219 * 8 7 5 38 38 H 0.96996 * 120.00277 * 185.00071 * 13 12 10 39 39 H 1.09004 * 117.49850 * 359.97438 * 18 9 8 40 40 H 1.08999 * 117.49947 * 145.01901 * 18 9 8 41 41 H 1.08999 * 117.49999 * 252.50884 * 19 18 9 42 42 H 1.08999 * 117.49575 * 107.48698 * 19 18 9 43 43 H 1.08993 * 113.61690 * 334.57860 * 22 20 2 44 44 H 1.09001 * 113.60890 * 105.47364 * 22 20 2 45 45 H 0.96695 * 117.00028 * 180.02562 * 27 25 23 46 46 H 1.08999 * 109.47180 * 157.49779 * 29 28 23 47 47 H 1.09001 * 109.46953 * 277.49490 * 29 28 23 48 48 H 1.08994 * 109.47459 * 37.49592 * 29 28 23 49 49 H 1.08997 * 109.47704 * 325.49991 * 30 28 23 50 50 H 1.08998 * 109.46860 * 85.50400 * 30 28 23 51 51 H 1.09005 * 109.47296 * 205.49669 * 30 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8583 1.1619 2.4115 7 7 2.5967 -0.6531 3.4576 8 6 2.7360 0.0778 4.7196 9 6 3.1439 -0.8936 5.8291 10 6 4.1585 -1.9373 5.4388 11 1 3.8338 -2.8660 4.9934 12 6 5.5012 -1.7064 5.6503 13 7 5.9059 -0.5344 6.0887 14 14 6.7456 -3.0583 5.3140 15 1 6.6706 -3.4560 3.8852 16 1 8.1115 -2.5607 5.6178 17 1 6.4442 -4.2329 6.1712 18 6 2.0734 -1.2940 6.8463 19 6 3.2043 -0.3491 7.2578 20 6 2.0401 -0.7214 -1.2491 21 1 1.7856 -1.7812 -1.2594 22 6 3.5185 -0.4379 -1.5637 23 6 3.1106 -0.3799 -3.0453 24 1 3.1498 -1.3460 -3.5484 25 6 3.8032 0.7118 -3.8197 26 8 3.2456 1.7674 -4.0058 27 8 5.0394 0.5114 -4.3027 28 6 1.7029 0.0060 -2.5614 29 6 0.5777 -0.6574 -3.3581 30 6 1.5026 1.5134 -2.3926 31 1 -0.3633 0.4282 -0.9342 32 1 -0.3633 -1.0232 0.0962 33 1 -0.3634 0.5949 0.8379 34 1 2.2491 -1.6316 1.1529 35 1 2.8239 -1.5951 3.4151 36 1 3.5004 0.8473 4.6114 37 1 1.7848 0.5440 4.9764 38 1 6.8544 -0.3475 6.1685 39 1 1.0786 -0.8650 6.7252 40 1 2.1027 -2.3126 7.2332 41 1 3.9776 -0.7461 7.9154 42 1 2.9534 0.7010 7.4071 43 1 3.8736 0.5148 -1.1708 44 1 4.1826 -1.2688 -1.3258 45 1 5.4429 1.2410 -4.7925 46 1 -0.3303 -0.6788 -2.7555 47 1 0.3950 -0.0896 -4.2704 48 1 0.8668 -1.6761 -3.6159 49 1 2.4324 1.9674 -2.0501 50 1 1.2151 1.9510 -3.3485 51 1 0.7174 1.6957 -1.6588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594529328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:24 Heat of formation + Delta-G solvation = -84.350178 kcal Electronic energy + Delta-G solvation = -30535.690935 eV Core-core repulsion = 26436.382457 eV Total energy + Delta-G solvation = -4099.308478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61211 -39.67543 -38.86108 -36.76310 -36.29017 -34.65332 -33.18666 -31.97797 -31.32706 -30.20389 -27.60912 -27.21621 -26.09490 -25.15250 -23.37824 -22.52656 -21.14612 -20.93791 -20.13922 -19.41832 -18.66279 -18.28548 -17.30886 -16.81415 -16.28776 -15.97988 -15.83591 -15.07218 -14.87094 -14.60245 -14.50506 -14.17055 -13.82090 -13.69535 -13.59084 -13.31521 -12.98908 -12.84653 -12.59108 -12.47140 -12.26629 -12.08926 -11.94738 -11.90723 -11.64776 -11.59033 -11.40099 -11.19136 -11.06144 -11.01313 -10.94021 -10.56238 -10.47221 -10.30107 -10.18334 -10.02470 -9.65867 -9.41999 -8.97764 -8.75466 -8.48491 -8.25584 -7.82360 -6.10048 -4.20255 1.96754 2.80724 3.22709 3.27723 3.30001 3.31078 3.88355 3.94785 4.16234 4.31344 4.37932 4.42302 4.90441 4.95151 4.99456 5.10875 5.15448 5.16887 5.18303 5.32385 5.40949 5.46131 5.53461 5.56702 5.65654 5.71749 5.72623 5.80076 5.94479 5.99842 6.05819 6.09057 6.15532 6.23893 6.33374 6.37323 6.48085 6.52692 6.60807 6.76714 6.91979 6.94089 7.14865 7.35168 7.44247 7.52975 7.69130 7.70886 7.76459 8.33603 8.79327 8.82124 9.31901 9.46798 10.96970 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013220 B = 0.002844 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.522702 B = 9842.315386 C =11078.110493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.174 3.826 3 H 0.090 0.910 4 N -0.749 5.749 5 C 0.697 3.303 6 O -0.609 6.609 7 N -0.716 5.716 8 C 0.183 3.817 9 C 0.024 3.976 10 C -0.503 4.503 11 H 0.059 0.941 12 C 0.077 3.923 13 N -0.871 5.871 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.213 4.213 19 C -0.142 4.142 20 C -0.110 4.110 21 H 0.101 0.899 22 C -0.113 4.113 23 C -0.106 4.106 24 H 0.124 0.876 25 C 0.486 3.514 26 O -0.506 6.506 27 O -0.519 6.519 28 C -0.049 4.049 29 C -0.140 4.140 30 C -0.126 4.126 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.392 0.608 35 H 0.401 0.599 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.262 0.738 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.407 0.593 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.069 0.931 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 -2.201 -19.653 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.069 3.931 3 H 0.108 0.892 4 N -0.405 5.405 5 C 0.397 3.603 6 O -0.489 6.489 7 N -0.369 5.369 8 C 0.059 3.941 9 C 0.023 3.977 10 C -0.541 4.541 11 H 0.077 0.923 12 C -0.128 4.128 13 N -0.506 5.506 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.251 4.251 19 C -0.180 4.180 20 C -0.129 4.129 21 H 0.119 0.881 22 C -0.151 4.151 23 C -0.125 4.125 24 H 0.142 0.858 25 C 0.329 3.671 26 O -0.394 6.394 27 O -0.331 6.331 28 C -0.050 4.050 29 C -0.197 4.197 30 C -0.182 4.182 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.225 0.775 35 H 0.236 0.764 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.266 0.734 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.204 -1.034 -19.265 20.594 hybrid contribution 1.448 -1.128 -0.550 1.916 sum -5.756 -2.162 -19.815 20.747 Atomic orbital electron populations 1.22300 0.95816 1.02019 1.02354 1.20628 0.93556 0.97053 0.81878 0.89193 1.45141 1.72911 1.13434 1.08980 1.16070 0.78649 0.85082 0.80488 1.90851 1.58500 1.14642 1.84874 1.45163 1.68505 1.14405 1.08838 1.20716 0.97949 0.93686 0.81755 1.19031 0.95080 0.96520 0.87026 1.20226 0.89973 1.01220 1.42635 0.92305 1.24986 0.98395 0.95329 0.94115 1.69983 1.15348 1.21015 1.44275 0.86713 0.80535 0.82331 0.78689 1.20250 1.21301 1.20195 1.23136 0.93156 0.99370 1.09420 1.22418 0.98978 0.95828 1.00741 1.22915 0.95589 1.00459 0.93895 0.88059 1.22911 0.97263 1.03803 0.91107 1.22743 0.96665 0.97182 0.95953 0.85821 1.23446 0.78989 0.88537 0.76164 1.90746 1.65436 1.27982 1.55218 1.84569 1.31935 1.48990 1.67565 1.21772 0.91790 0.97319 0.94080 1.21828 0.98006 0.99949 0.99880 1.21846 1.02230 0.91746 1.02415 0.91558 0.92705 0.91900 0.77468 0.76369 0.92418 0.94473 0.92792 0.91772 0.90512 0.89529 0.91826 0.89121 0.89699 0.73439 0.91487 0.92307 0.92376 0.92150 0.91253 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 8.98 37.16 0.33 -1.54 16 2 C 0.17 2.11 1.69 -67.93 -0.11 2.00 16 3 H 0.09 1.33 6.34 -51.93 -0.33 1.00 16 4 N -0.75 -10.50 5.08 -58.67 -0.30 -10.80 16 5 C 0.70 13.35 8.53 -86.92 -0.74 12.61 16 6 O -0.61 -13.88 16.00 5.29 0.08 -13.80 16 7 N -0.72 -14.30 5.38 -65.23 -0.35 -14.65 16 8 C 0.18 4.16 5.75 -4.05 -0.02 4.14 16 9 C 0.02 0.57 1.89 -155.66 -0.29 0.27 16 10 C -0.50 -12.55 7.51 -34.44 -0.26 -12.81 16 11 H 0.06 1.42 7.72 -52.49 -0.41 1.01 16 12 C 0.08 1.97 5.36 -17.82 -0.10 1.88 16 13 N -0.87 -23.74 12.39 55.43 0.69 -23.05 16 14 Si 0.89 19.94 29.54 -169.99 -5.02 14.91 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 C -0.21 -4.53 9.88 -26.73 -0.26 -4.80 16 19 C -0.14 -3.27 8.98 -26.73 -0.24 -3.51 16 20 C -0.11 -0.98 2.76 -89.80 -0.25 -1.22 16 21 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 22 C -0.11 -1.07 6.84 -25.92 -0.18 -1.25 16 23 C -0.11 -0.89 3.76 -90.96 -0.34 -1.23 16 24 H 0.12 0.80 7.96 -51.93 -0.41 0.39 16 25 C 0.49 4.79 7.56 36.01 0.27 5.06 16 26 O -0.51 -6.19 13.47 -18.75 -0.25 -6.44 16 27 O -0.52 -4.19 13.42 -39.25 -0.53 -4.71 16 28 C -0.05 -0.42 0.68 -153.70 -0.10 -0.52 16 29 C -0.14 -0.97 9.13 37.15 0.34 -0.64 16 30 C -0.13 -1.33 6.01 37.16 0.22 -1.10 16 31 H 0.07 0.63 4.94 -51.93 -0.26 0.37 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.39 4.55 8.62 -40.82 -0.35 4.20 16 35 H 0.40 7.54 7.32 -40.82 -0.30 7.24 16 36 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.04 0.83 7.95 -51.93 -0.41 0.42 16 38 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 39 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 40 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 41 H 0.09 2.15 7.98 -51.93 -0.41 1.73 16 42 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.09 1.03 7.55 -51.93 -0.39 0.64 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.41 1.68 9.10 45.56 0.41 2.10 16 46 H 0.07 0.45 7.16 -51.93 -0.37 0.08 16 47 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 48 H 0.06 0.34 7.94 -51.93 -0.41 -0.08 16 49 H 0.06 0.74 6.17 -51.93 -0.32 0.42 16 50 H 0.07 0.76 7.11 -51.93 -0.37 0.39 16 51 H 0.06 0.64 5.29 -51.93 -0.27 0.36 16 LS Contribution 402.55 15.07 6.07 6.07 Total: -1.00 -31.70 402.55 -8.89 -40.59 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -7.54 Total: 14.55 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.73 Total: -2.66 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.04 Total: -48.50 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.69 Total: -24.96 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.70 -8.89 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594529328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.765 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds