Wall clock time and date at job start Tue Mar 31 2020 21:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47274 * 2 1 4 4 N 1.46504 * 109.46966 * 119.99183 * 2 1 3 5 5 C 1.34779 * 120.00260 * 275.00134 * 4 2 1 6 6 O 1.21590 * 119.99563 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00214 * 180.02562 * 5 4 2 8 8 C 1.46492 * 119.99830 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46922 * 175.11006 * 8 7 5 10 10 C 1.50697 * 115.55407 * 40.33511 * 9 8 7 11 11 H 1.07997 * 120.00471 * 273.59374 * 10 9 8 12 12 C 1.37880 * 119.99691 * 93.58718 * 10 9 8 13 13 N 1.31516 * 120.00219 * 354.35657 * 12 10 9 14 14 Si 1.86798 * 119.99835 * 174.36235 * 12 10 9 15 15 H 1.48501 * 109.47184 * 59.99851 * 14 12 10 16 16 H 1.48507 * 109.47210 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46905 * 299.99521 * 14 12 10 18 18 C 1.53004 * 117.49820 * 254.62895 * 9 8 7 19 19 C 1.53001 * 60.00236 * 252.50998 * 18 9 8 20 20 C 1.52998 * 109.47510 * 239.99033 * 2 1 3 21 21 H 1.08994 * 112.85151 * 294.69604 * 20 2 1 22 22 C 1.53787 * 113.61385 * 163.38663 * 20 2 1 23 23 C 1.53781 * 87.07888 * 220.02139 * 22 20 2 24 24 H 1.08993 * 113.69086 * 270.87418 * 23 22 20 25 25 C 1.50709 * 113.60842 * 139.98510 * 23 22 20 26 26 O 1.20823 * 119.99835 * 262.50473 * 25 23 22 27 27 O 1.34226 * 120.00106 * 82.50504 * 25 23 22 28 28 C 1.53778 * 87.08395 * 25.43707 * 23 22 20 29 29 C 1.52995 * 113.61372 * 220.01724 * 28 23 22 30 30 C 1.53001 * 113.69092 * 89.12005 * 28 23 22 31 31 H 1.08996 * 109.46783 * 65.37579 * 1 2 3 32 32 H 1.08999 * 109.46814 * 185.37400 * 1 2 3 33 33 H 1.08995 * 109.47352 * 305.37503 * 1 2 3 34 34 H 0.97003 * 119.99907 * 95.00454 * 4 2 1 35 35 H 0.96997 * 119.99775 * 359.72220 * 7 5 4 36 36 H 1.09003 * 109.47453 * 295.10573 * 8 7 5 37 37 H 1.09004 * 109.47524 * 55.11219 * 8 7 5 38 38 H 0.96996 * 120.00277 * 185.00071 * 13 12 10 39 39 H 1.09004 * 117.49850 * 359.97438 * 18 9 8 40 40 H 1.08999 * 117.49947 * 145.01901 * 18 9 8 41 41 H 1.08999 * 117.49999 * 252.50884 * 19 18 9 42 42 H 1.08999 * 117.49575 * 107.48698 * 19 18 9 43 43 H 1.08993 * 113.61690 * 334.57860 * 22 20 2 44 44 H 1.09001 * 113.60890 * 105.47364 * 22 20 2 45 45 H 0.96695 * 117.00028 * 180.02562 * 27 25 23 46 46 H 1.08999 * 109.47180 * 157.49779 * 29 28 23 47 47 H 1.09001 * 109.46953 * 277.49490 * 29 28 23 48 48 H 1.08994 * 109.47459 * 37.49592 * 29 28 23 49 49 H 1.08997 * 109.47704 * 325.49991 * 30 28 23 50 50 H 1.08998 * 109.46860 * 85.50400 * 30 28 23 51 51 H 1.09005 * 109.47296 * 205.49669 * 30 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8583 1.1619 2.4115 7 7 2.5967 -0.6531 3.4576 8 6 2.7360 0.0778 4.7196 9 6 3.1439 -0.8936 5.8291 10 6 4.1585 -1.9373 5.4388 11 1 3.8338 -2.8660 4.9934 12 6 5.5012 -1.7064 5.6503 13 7 5.9059 -0.5344 6.0887 14 14 6.7456 -3.0583 5.3140 15 1 6.6706 -3.4560 3.8852 16 1 8.1115 -2.5607 5.6178 17 1 6.4442 -4.2329 6.1712 18 6 2.0734 -1.2940 6.8463 19 6 3.2043 -0.3491 7.2578 20 6 2.0401 -0.7214 -1.2491 21 1 1.7856 -1.7812 -1.2594 22 6 3.5185 -0.4379 -1.5637 23 6 3.1106 -0.3799 -3.0453 24 1 3.1498 -1.3460 -3.5484 25 6 3.8032 0.7118 -3.8197 26 8 3.2456 1.7674 -4.0058 27 8 5.0394 0.5114 -4.3027 28 6 1.7029 0.0060 -2.5614 29 6 0.5777 -0.6574 -3.3581 30 6 1.5026 1.5134 -2.3926 31 1 -0.3633 0.4282 -0.9342 32 1 -0.3633 -1.0232 0.0962 33 1 -0.3634 0.5949 0.8379 34 1 2.2491 -1.6316 1.1529 35 1 2.8239 -1.5951 3.4151 36 1 3.5004 0.8473 4.6114 37 1 1.7848 0.5440 4.9764 38 1 6.8544 -0.3475 6.1685 39 1 1.0786 -0.8650 6.7252 40 1 2.1027 -2.3126 7.2332 41 1 3.9776 -0.7461 7.9154 42 1 2.9534 0.7010 7.4071 43 1 3.8736 0.5148 -1.1708 44 1 4.1826 -1.2688 -1.3258 45 1 5.4429 1.2410 -4.7925 46 1 -0.3303 -0.6788 -2.7555 47 1 0.3950 -0.0896 -4.2704 48 1 0.8668 -1.6761 -3.6159 49 1 2.4324 1.9674 -2.0501 50 1 1.2151 1.9510 -3.3485 51 1 0.7174 1.6957 -1.6588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594529328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:23 Heat of formation + Delta-G solvation = -105.298351 kcal Electronic energy + Delta-G solvation = -30536.599316 eV Core-core repulsion = 26436.382457 eV Total energy + Delta-G solvation = -4100.216859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.38629 -40.91777 -39.91761 -38.51119 -37.06495 -35.87131 -34.88139 -33.92793 -32.11409 -31.26865 -28.34699 -27.99437 -27.89386 -26.97496 -24.27450 -23.28583 -22.88800 -21.99970 -21.51536 -21.20175 -19.63975 -19.14261 -18.53231 -18.04979 -17.53894 -17.16031 -16.73289 -16.69376 -16.24243 -15.89699 -15.76951 -15.57383 -15.01535 -14.71459 -14.64789 -14.36332 -14.29976 -14.05130 -13.87529 -13.68120 -13.44381 -13.28000 -13.02053 -12.88531 -12.84579 -12.75820 -12.63460 -12.38870 -12.35745 -12.16807 -12.07511 -11.97642 -11.83526 -11.44821 -11.32523 -11.18678 -11.00672 -10.86034 -10.76776 -10.40895 -10.19755 -9.97279 -9.46916 -8.06047 -6.20959 1.21537 1.46553 1.49209 1.55067 1.90756 2.21027 2.34429 2.45274 3.20279 3.24725 3.32005 3.49322 3.62114 3.67249 3.76428 4.14139 4.26754 4.29873 4.33929 4.45117 4.48532 4.51104 4.56943 4.67805 4.70427 4.72289 4.76638 4.81768 4.92362 4.94880 4.99359 5.02489 5.06323 5.12272 5.15587 5.19935 5.26417 5.30434 5.35324 5.49125 5.53132 5.55047 5.67543 5.70725 5.75083 5.78038 5.84434 6.27718 6.40865 6.87020 7.03642 7.36083 7.49045 7.79750 9.00723 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013220 B = 0.002844 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.522702 B = 9842.315386 C =11078.110493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.172 3.828 3 H 0.056 0.944 4 N -0.727 5.727 5 C 0.694 3.306 6 O -0.649 6.649 7 N -0.714 5.714 8 C 0.198 3.802 9 C 0.005 3.995 10 C -0.504 4.504 11 H 0.069 0.931 12 C 0.028 3.972 13 N -0.907 5.907 14 Si 0.951 3.049 15 H -0.264 1.264 16 H -0.296 1.296 17 H -0.272 1.272 18 C -0.184 4.184 19 C -0.153 4.153 20 C -0.097 4.097 21 H 0.135 0.865 22 C -0.119 4.119 23 C -0.099 4.099 24 H 0.156 0.844 25 C 0.484 3.516 26 O -0.538 6.538 27 O -0.517 6.517 28 C -0.047 4.047 29 C -0.136 4.136 30 C -0.120 4.120 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.409 0.591 35 H 0.408 0.592 36 H 0.018 0.982 37 H 0.037 0.963 38 H 0.258 0.742 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.423 0.577 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.080 0.920 49 H 0.034 0.966 50 H 0.062 0.938 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 -5.443 -21.532 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 H 0.074 0.926 4 N -0.384 5.384 5 C 0.394 3.606 6 O -0.533 6.533 7 N -0.368 5.368 8 C 0.073 3.927 9 C 0.004 3.996 10 C -0.542 4.542 11 H 0.087 0.913 12 C -0.173 4.173 13 N -0.544 5.544 14 Si 0.777 3.223 15 H -0.189 1.189 16 H -0.222 1.222 17 H -0.197 1.197 18 C -0.221 4.221 19 C -0.191 4.191 20 C -0.116 4.116 21 H 0.153 0.847 22 C -0.156 4.156 23 C -0.118 4.118 24 H 0.173 0.827 25 C 0.328 3.672 26 O -0.428 6.428 27 O -0.331 6.331 28 C -0.047 4.047 29 C -0.193 4.193 30 C -0.177 4.177 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.245 0.755 35 H 0.245 0.755 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.284 0.716 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.099 0.901 49 H 0.053 0.947 50 H 0.081 0.919 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.028 -4.334 -21.196 23.076 hybrid contribution 1.714 -0.038 0.007 1.714 sum -6.314 -4.371 -21.188 22.537 Atomic orbital electron populations 1.22229 0.94737 1.02782 1.01990 1.20750 0.94353 0.95820 0.82377 0.92567 1.44996 1.71530 1.14055 1.07775 1.16245 0.78288 0.84660 0.81384 1.90826 1.60142 1.16673 1.85633 1.44967 1.68908 1.14495 1.08394 1.20350 0.96495 0.92940 0.82953 1.19116 0.96385 0.96844 0.87262 1.20548 0.90285 1.01619 1.41760 0.91316 1.25713 1.00336 0.97034 0.94241 1.70130 1.15234 1.22996 1.46034 0.85729 0.77740 0.79709 0.79122 1.18884 1.22247 1.19694 1.23118 0.93233 0.99226 1.06517 1.22328 0.99793 0.96517 1.00484 1.22931 0.94972 1.01742 0.91934 0.84720 1.22881 0.97832 1.02822 0.92100 1.22839 0.95801 0.98010 0.95119 0.82683 1.23779 0.79245 0.88402 0.75776 1.90743 1.66274 1.29250 1.56526 1.84531 1.31210 1.49859 1.67495 1.21720 0.93090 0.95708 0.94230 1.21826 0.97282 1.00835 0.99392 1.21745 1.00657 0.93673 1.01628 0.89732 0.90663 0.95090 0.75491 0.75503 0.96330 0.94492 0.93329 0.89659 0.89785 0.91693 0.91471 0.92069 0.88374 0.71611 0.90954 0.92659 0.90127 0.94724 0.91941 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.98 71.98 0.65 -2.71 16 2 C 0.17 4.01 1.69 44.99 0.08 4.09 16 3 H 0.06 1.73 6.34 -2.39 -0.02 1.72 16 4 N -0.73 -19.51 5.08 -457.80 -2.33 -21.84 16 5 C 0.69 26.69 8.53 179.05 1.53 28.22 16 6 O -0.65 -30.64 16.00 -4.00 -0.06 -30.70 16 7 N -0.71 -28.36 5.38 -478.54 -2.58 -30.94 16 8 C 0.20 9.15 5.75 86.38 0.50 9.65 16 9 C 0.00 0.22 1.89 -52.92 -0.10 0.12 16 10 C -0.50 -24.77 7.51 25.60 0.19 -24.58 16 11 H 0.07 3.17 7.72 -2.91 -0.02 3.15 16 12 C 0.03 1.43 5.36 84.66 0.45 1.88 16 13 N -0.91 -50.43 12.39 21.45 0.27 -50.16 16 14 Si 0.95 40.45 29.54 68.60 2.03 42.48 16 15 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 16 H -0.30 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 18 C -0.18 -7.51 9.88 30.60 0.30 -7.21 16 19 C -0.15 -7.13 8.98 30.60 0.27 -6.85 16 20 C -0.10 -1.48 2.76 -10.26 -0.03 -1.51 16 21 H 0.13 1.27 8.10 -2.39 -0.02 1.25 16 22 C -0.12 -2.04 6.84 31.12 0.21 -1.83 16 23 C -0.10 -1.41 3.76 -11.01 -0.04 -1.45 16 24 H 0.16 1.29 7.96 -2.39 -0.02 1.27 16 25 C 0.48 9.04 7.56 71.24 0.54 9.58 16 26 O -0.54 -13.24 13.47 21.97 0.30 -12.94 16 27 O -0.52 -7.58 13.42 -51.38 -0.69 -8.27 16 28 C -0.05 -0.71 0.68 -51.66 -0.03 -0.74 16 29 C -0.14 -1.43 9.13 71.98 0.66 -0.77 16 30 C -0.12 -2.57 6.01 71.98 0.43 -2.14 16 31 H 0.08 1.46 4.94 -2.39 -0.01 1.45 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.41 8.36 8.62 -92.71 -0.80 7.56 16 35 H 0.41 14.83 7.32 -92.71 -0.68 14.15 16 36 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.04 1.68 7.95 -2.38 -0.02 1.66 16 38 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 39 H 0.09 3.13 8.09 -2.38 -0.02 3.12 16 40 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.06 3.28 7.98 -2.39 -0.02 3.26 16 42 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 43 H 0.06 1.43 7.55 -2.39 -0.02 1.41 16 44 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.42 3.03 9.10 -74.06 -0.67 2.36 16 46 H 0.07 0.70 7.16 -2.39 -0.02 0.68 16 47 H 0.05 0.64 8.12 -2.39 -0.02 0.63 16 48 H 0.08 0.52 7.94 -2.39 -0.02 0.50 16 49 H 0.03 0.90 6.17 -2.39 -0.01 0.89 16 50 H 0.06 1.40 7.11 -2.39 -0.02 1.38 16 51 H 0.06 1.21 5.29 -2.38 -0.01 1.20 16 Total: -1.00 -71.09 402.55 1.36 -69.74 By element: Atomic # 1 Polarization: 40.07 SS G_CDS: -1.18 Total: 38.89 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 5.61 Total: 3.75 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -4.64 Total: -102.93 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.46 Total: -51.92 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -71.09 1.36 -69.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594529328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.561 kcal (2) G-P(sol) polarization free energy of solvation -71.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds