Wall clock time and date at job start Tue Mar 31 2020 21:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46804 * 2 1 4 4 N 1.46497 * 109.47223 * 240.00086 * 2 1 3 5 5 C 1.34779 * 120.00272 * 85.00121 * 4 2 1 6 6 O 1.21585 * 119.99616 * 0.02562 * 5 4 2 7 7 N 1.34769 * 119.99901 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99872 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47124 * 176.65346 * 8 7 5 10 10 C 1.50710 * 115.54881 * 39.51807 * 9 8 7 11 11 H 1.07998 * 119.99295 * 264.69055 * 10 9 8 12 12 C 1.37874 * 120.00393 * 84.68696 * 10 9 8 13 13 N 1.31515 * 120.00032 * 2.05632 * 12 10 9 14 14 Si 1.86798 * 120.00197 * 182.05114 * 12 10 9 15 15 H 1.48501 * 109.46913 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.46991 * 119.99833 * 14 12 10 17 17 H 1.48497 * 109.47078 * 240.00415 * 14 12 10 18 18 C 1.52995 * 117.50339 * 253.80439 * 9 8 7 19 19 C 1.53000 * 117.49854 * 185.17839 * 9 8 7 20 20 C 1.53002 * 109.46950 * 119.99716 * 2 1 3 21 21 H 1.09002 * 112.84884 * 67.68069 * 20 2 1 22 22 C 1.53782 * 113.61403 * 296.48825 * 20 2 1 23 23 C 1.53785 * 87.07858 * 219.93511 * 22 20 2 24 24 H 1.09005 * 113.61049 * 270.79872 * 23 22 20 25 25 C 1.50703 * 113.61552 * 139.98339 * 23 22 20 26 26 O 1.20824 * 119.99708 * 259.50855 * 25 23 22 27 27 O 1.34222 * 119.99818 * 79.50127 * 25 23 22 28 28 C 1.53776 * 113.68916 * 198.95192 * 20 2 1 29 29 C 1.53005 * 113.61534 * 254.54165 * 28 20 2 30 30 C 1.52999 * 113.61894 * 25.44644 * 28 20 2 31 31 H 1.08996 * 109.47256 * 185.14088 * 1 2 3 32 32 H 1.08996 * 109.47395 * 305.14480 * 1 2 3 33 33 H 1.09010 * 109.47059 * 65.14204 * 1 2 3 34 34 H 0.97001 * 119.99664 * 264.99734 * 4 2 1 35 35 H 0.97001 * 120.00556 * 0.02562 * 7 5 4 36 36 H 1.08998 * 109.46811 * 296.65642 * 8 7 5 37 37 H 1.09000 * 109.46720 * 56.65885 * 8 7 5 38 38 H 0.96994 * 120.00480 * 185.01288 * 13 12 10 39 39 H 1.08998 * 117.49431 * 0.02562 * 18 9 8 40 40 H 1.08995 * 117.49907 * 145.02111 * 18 9 8 41 41 H 1.09000 * 117.50030 * 214.98240 * 19 9 8 42 42 H 1.08996 * 117.49892 * 0.02562 * 19 9 8 43 43 H 1.08991 * 113.61377 * 334.48081 * 22 20 2 44 44 H 1.09000 * 113.61106 * 105.30353 * 22 20 2 45 45 H 0.96700 * 117.00211 * 180.02562 * 27 25 23 46 46 H 1.08995 * 109.47063 * 60.00228 * 29 28 20 47 47 H 1.08997 * 109.47387 * 180.02562 * 29 28 20 48 48 H 1.09003 * 109.46888 * 299.99948 * 29 28 20 49 49 H 1.09002 * 109.46931 * 59.82755 * 30 28 20 50 50 H 1.08995 * 109.47492 * 179.83292 * 30 28 20 51 51 H 1.09000 * 109.46680 * 299.83219 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8584 1.1616 -2.4116 7 7 2.5969 -0.6535 -3.4574 8 6 2.7363 0.0772 -4.7195 9 6 3.3397 -0.8464 -5.7795 10 6 2.8420 -2.2688 -5.7616 11 1 3.3977 -3.0286 -5.2321 12 6 1.6774 -2.6002 -6.4210 13 7 1.0223 -1.6835 -7.0994 14 14 1.0301 -4.3510 -6.3510 15 1 1.9437 -5.1840 -5.5284 16 1 -0.3244 -4.3540 -5.7423 17 1 0.9562 -4.9067 -7.7261 18 6 4.8003 -0.6135 -6.1709 19 6 3.6788 -0.2338 -7.1399 20 6 2.0400 -0.7212 1.2493 21 1 1.8214 -1.7890 1.2404 22 6 1.6528 -0.0241 2.5642 23 6 3.0625 -0.3710 3.0716 24 1 3.1231 -1.3425 3.5622 25 6 3.7032 0.7314 3.8750 26 8 4.5212 1.4567 3.3606 27 8 3.3649 0.9074 5.1619 28 6 3.5016 -0.3944 1.5980 29 6 4.4781 -1.5250 1.2674 30 6 3.9670 0.9662 1.0755 31 1 -0.3633 -1.0235 0.0921 32 1 -0.3634 0.5915 0.8403 33 1 -0.3634 0.4320 -0.9325 34 1 2.2491 -1.6317 -1.1525 35 1 2.8276 -1.5947 -3.4138 36 1 1.7561 0.4196 -5.0512 37 1 3.3905 0.9364 -4.5714 38 1 0.1664 -1.8976 -7.5025 39 1 5.3315 0.1976 -5.6728 40 1 5.4017 -1.4891 -6.4153 41 1 3.5423 -0.8597 -8.0218 42 1 3.4724 0.8273 -7.2796 43 1 1.4789 1.0464 2.4561 44 1 0.8548 -0.5298 3.1080 45 1 3.8023 1.6277 5.6363 46 1 4.4385 -1.7385 0.1993 47 1 5.4892 -1.2233 1.5407 48 1 4.2022 -2.4187 1.8271 49 1 3.3444 1.7520 1.5034 50 1 5.0059 1.1294 1.3617 51 1 3.8819 0.9866 -0.0110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594529329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:27 Heat of formation + Delta-G solvation = -86.078614 kcal Electronic energy + Delta-G solvation = -30788.755545 eV Core-core repulsion = 26689.372116 eV Total energy + Delta-G solvation = -4099.383429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59413 -39.68330 -38.80443 -36.74778 -36.32327 -34.63500 -33.14405 -32.00513 -31.28308 -30.10144 -27.57166 -27.10133 -26.10289 -25.18166 -23.65191 -22.39804 -21.12956 -20.82633 -20.07906 -19.38389 -18.66834 -18.33097 -17.33495 -16.85616 -16.25522 -16.00958 -15.74019 -14.98154 -14.88724 -14.66788 -14.35775 -14.20484 -14.07491 -13.68680 -13.45001 -13.12663 -12.92281 -12.79063 -12.57319 -12.38403 -12.21687 -12.01798 -11.96283 -11.84936 -11.73305 -11.59505 -11.41235 -11.36338 -11.04055 -10.97186 -10.90959 -10.53491 -10.45200 -10.32253 -10.19026 -9.97976 -9.63948 -9.36565 -9.01858 -8.72039 -8.49624 -8.23115 -7.79083 -6.10636 -4.20466 1.94484 2.77807 3.21540 3.30196 3.31381 3.32212 3.91213 3.99000 4.12979 4.31557 4.33581 4.42549 4.93551 4.99291 5.04596 5.11518 5.17449 5.20053 5.21399 5.36450 5.39762 5.44396 5.50595 5.58359 5.65802 5.73051 5.83539 5.91057 5.98580 6.07664 6.09109 6.13278 6.16067 6.24024 6.35921 6.39705 6.52707 6.54298 6.62130 6.76584 6.94486 6.96960 7.14281 7.34862 7.45824 7.53192 7.66457 7.73201 7.77569 8.34178 8.80598 8.85668 9.35643 9.47229 10.97359 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.002730 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.690677 B =10254.254557 C =10731.625412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.172 3.828 3 H 0.093 0.907 4 N -0.747 5.747 5 C 0.698 3.302 6 O -0.609 6.609 7 N -0.715 5.715 8 C 0.184 3.816 9 C 0.026 3.974 10 C -0.501 4.501 11 H 0.060 0.940 12 C 0.076 3.924 13 N -0.870 5.870 14 Si 0.887 3.113 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.212 4.212 19 C -0.147 4.147 20 C -0.111 4.111 21 H 0.101 0.899 22 C -0.109 4.109 23 C -0.107 4.107 24 H 0.124 0.876 25 C 0.485 3.515 26 O -0.503 6.503 27 O -0.521 6.521 28 C -0.052 4.052 29 C -0.138 4.138 30 C -0.120 4.120 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.392 0.608 35 H 0.401 0.599 36 H 0.059 0.941 37 H 0.036 0.964 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.406 0.594 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.052 0.948 50 H 0.070 0.930 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 0.386 22.166 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.066 3.934 3 H 0.111 0.889 4 N -0.402 5.402 5 C 0.398 3.602 6 O -0.489 6.489 7 N -0.368 5.368 8 C 0.060 3.940 9 C 0.025 3.975 10 C -0.538 4.538 11 H 0.078 0.922 12 C -0.128 4.128 13 N -0.506 5.506 14 Si 0.715 3.285 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.249 4.249 19 C -0.185 4.185 20 C -0.130 4.130 21 H 0.119 0.881 22 C -0.147 4.147 23 C -0.126 4.126 24 H 0.142 0.858 25 C 0.327 3.673 26 O -0.390 6.390 27 O -0.333 6.333 28 C -0.052 4.052 29 C -0.196 4.196 30 C -0.177 4.177 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.225 0.775 35 H 0.236 0.764 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.265 0.735 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.979 1.382 21.528 21.663 hybrid contribution -0.040 -1.383 0.361 1.430 sum 1.939 -0.001 21.889 21.975 Atomic orbital electron populations 1.22199 0.95836 1.01711 1.02488 1.20668 0.93347 0.97341 0.82029 0.88911 1.45105 1.72874 1.13331 1.08935 1.16055 0.78639 0.85105 0.80440 1.90849 1.58316 1.14790 1.84941 1.45166 1.68732 1.14358 1.08574 1.20666 0.99799 0.92058 0.81470 1.19048 0.90876 0.95269 0.92290 1.20342 1.08622 0.91503 1.33379 0.92168 1.24982 0.97013 0.96863 0.93977 1.70003 1.14190 1.33480 1.32886 0.86623 0.78886 0.85096 0.77907 1.19675 1.21000 1.21029 1.23077 0.93243 1.01413 1.07148 1.22470 1.01952 0.98469 0.95615 1.22943 0.95403 1.00625 0.93980 0.88065 1.22826 0.94096 1.02017 0.95723 1.22764 0.98301 0.96792 0.94716 0.85787 1.23475 0.79409 0.84578 0.79835 1.90761 1.32138 1.45804 1.70316 1.84564 1.67137 1.55733 1.25828 1.21830 0.94855 0.97877 0.90638 1.21776 0.98756 0.96572 1.02450 1.21712 1.02269 0.93125 1.00579 0.92744 0.92257 0.91689 0.77525 0.76363 0.92300 0.94565 0.92934 0.91669 0.90534 0.89714 0.91811 0.89184 0.89696 0.73502 0.91398 0.92372 0.92512 0.92851 0.91062 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.25 37.16 0.34 -1.59 16 2 C 0.17 2.08 1.74 -67.93 -0.12 1.96 16 3 H 0.09 1.34 5.60 -51.93 -0.29 1.05 16 4 N -0.75 -10.50 5.08 -58.68 -0.30 -10.80 16 5 C 0.70 13.37 8.53 -86.92 -0.74 12.63 16 6 O -0.61 -13.88 16.01 5.29 0.08 -13.79 16 7 N -0.71 -14.35 5.37 -65.23 -0.35 -14.70 16 8 C 0.18 4.21 5.75 -4.04 -0.02 4.19 16 9 C 0.03 0.61 1.79 -155.66 -0.28 0.33 16 10 C -0.50 -12.51 7.38 -34.44 -0.25 -12.76 16 11 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 12 C 0.08 1.97 5.43 -17.82 -0.10 1.87 16 13 N -0.87 -23.80 12.72 55.43 0.71 -23.09 16 14 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.21 -4.48 9.88 -26.73 -0.26 -4.75 16 19 C -0.15 -3.39 9.26 -26.73 -0.25 -3.64 16 20 C -0.11 -0.96 2.78 -89.81 -0.25 -1.21 16 21 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 22 C -0.11 -0.81 6.14 -25.92 -0.16 -0.97 16 23 C -0.11 -0.83 3.76 -90.96 -0.34 -1.18 16 24 H 0.12 0.75 7.97 -51.93 -0.41 0.33 16 25 C 0.48 4.47 7.52 36.01 0.27 4.74 16 26 O -0.50 -6.12 13.56 -18.75 -0.25 -6.37 16 27 O -0.52 -3.62 13.42 -39.24 -0.53 -4.14 16 28 C -0.05 -0.49 1.19 -153.70 -0.18 -0.67 16 29 C -0.14 -1.22 9.19 37.16 0.34 -0.87 16 30 C -0.12 -1.46 5.98 37.16 0.22 -1.24 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.58 7.73 -51.93 -0.40 0.18 16 33 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.39 4.63 8.62 -40.82 -0.35 4.28 16 35 H 0.40 7.60 7.37 -40.82 -0.30 7.30 16 36 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.04 0.82 7.94 -51.93 -0.41 0.40 16 38 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 39 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.08 2.09 8.14 -51.93 -0.42 1.66 16 42 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.09 0.74 7.56 -51.93 -0.39 0.34 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.41 1.27 9.10 45.56 0.41 1.68 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.40 7.95 -51.93 -0.41 -0.01 16 49 H 0.05 0.67 6.33 -51.93 -0.33 0.34 16 50 H 0.07 0.93 6.88 -51.93 -0.36 0.57 16 51 H 0.06 0.87 7.12 -51.93 -0.37 0.50 16 LS Contribution 408.34 15.07 6.15 6.15 Total: -1.00 -31.78 408.34 -9.09 -40.88 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -7.81 Total: 14.10 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.78 Total: -3.16 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.06 Total: -48.59 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.70 Total: -24.31 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.78 -9.09 -40.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594529329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.202 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds