Wall clock time and date at job start Tue Mar 31 2020 21:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46804 * 2 1 4 4 N 1.46497 * 109.47223 * 240.00086 * 2 1 3 5 5 C 1.34779 * 120.00272 * 85.00121 * 4 2 1 6 6 O 1.21585 * 119.99616 * 0.02562 * 5 4 2 7 7 N 1.34769 * 119.99901 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99872 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47124 * 176.65346 * 8 7 5 10 10 C 1.50710 * 115.54881 * 39.51807 * 9 8 7 11 11 H 1.07998 * 119.99295 * 264.69055 * 10 9 8 12 12 C 1.37874 * 120.00393 * 84.68696 * 10 9 8 13 13 N 1.31515 * 120.00032 * 2.05632 * 12 10 9 14 14 Si 1.86798 * 120.00197 * 182.05114 * 12 10 9 15 15 H 1.48501 * 109.46913 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.46991 * 119.99833 * 14 12 10 17 17 H 1.48497 * 109.47078 * 240.00415 * 14 12 10 18 18 C 1.52995 * 117.50339 * 253.80439 * 9 8 7 19 19 C 1.53000 * 117.49854 * 185.17839 * 9 8 7 20 20 C 1.53002 * 109.46950 * 119.99716 * 2 1 3 21 21 H 1.09002 * 112.84884 * 67.68069 * 20 2 1 22 22 C 1.53782 * 113.61403 * 296.48825 * 20 2 1 23 23 C 1.53785 * 87.07858 * 219.93511 * 22 20 2 24 24 H 1.09005 * 113.61049 * 270.79872 * 23 22 20 25 25 C 1.50703 * 113.61552 * 139.98339 * 23 22 20 26 26 O 1.20824 * 119.99708 * 259.50855 * 25 23 22 27 27 O 1.34222 * 119.99818 * 79.50127 * 25 23 22 28 28 C 1.53776 * 113.68916 * 198.95192 * 20 2 1 29 29 C 1.53005 * 113.61534 * 254.54165 * 28 20 2 30 30 C 1.52999 * 113.61894 * 25.44644 * 28 20 2 31 31 H 1.08996 * 109.47256 * 185.14088 * 1 2 3 32 32 H 1.08996 * 109.47395 * 305.14480 * 1 2 3 33 33 H 1.09010 * 109.47059 * 65.14204 * 1 2 3 34 34 H 0.97001 * 119.99664 * 264.99734 * 4 2 1 35 35 H 0.97001 * 120.00556 * 0.02562 * 7 5 4 36 36 H 1.08998 * 109.46811 * 296.65642 * 8 7 5 37 37 H 1.09000 * 109.46720 * 56.65885 * 8 7 5 38 38 H 0.96994 * 120.00480 * 185.01288 * 13 12 10 39 39 H 1.08998 * 117.49431 * 0.02562 * 18 9 8 40 40 H 1.08995 * 117.49907 * 145.02111 * 18 9 8 41 41 H 1.09000 * 117.50030 * 214.98240 * 19 9 8 42 42 H 1.08996 * 117.49892 * 0.02562 * 19 9 8 43 43 H 1.08991 * 113.61377 * 334.48081 * 22 20 2 44 44 H 1.09000 * 113.61106 * 105.30353 * 22 20 2 45 45 H 0.96700 * 117.00211 * 180.02562 * 27 25 23 46 46 H 1.08995 * 109.47063 * 60.00228 * 29 28 20 47 47 H 1.08997 * 109.47387 * 180.02562 * 29 28 20 48 48 H 1.09003 * 109.46888 * 299.99948 * 29 28 20 49 49 H 1.09002 * 109.46931 * 59.82755 * 30 28 20 50 50 H 1.08995 * 109.47492 * 179.83292 * 30 28 20 51 51 H 1.09000 * 109.46680 * 299.83219 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8584 1.1616 -2.4116 7 7 2.5969 -0.6535 -3.4574 8 6 2.7363 0.0772 -4.7195 9 6 3.3397 -0.8464 -5.7795 10 6 2.8420 -2.2688 -5.7616 11 1 3.3977 -3.0286 -5.2321 12 6 1.6774 -2.6002 -6.4210 13 7 1.0223 -1.6835 -7.0994 14 14 1.0301 -4.3510 -6.3510 15 1 1.9437 -5.1840 -5.5284 16 1 -0.3244 -4.3540 -5.7423 17 1 0.9562 -4.9067 -7.7261 18 6 4.8003 -0.6135 -6.1709 19 6 3.6788 -0.2338 -7.1399 20 6 2.0400 -0.7212 1.2493 21 1 1.8214 -1.7890 1.2404 22 6 1.6528 -0.0241 2.5642 23 6 3.0625 -0.3710 3.0716 24 1 3.1231 -1.3425 3.5622 25 6 3.7032 0.7314 3.8750 26 8 4.5212 1.4567 3.3606 27 8 3.3649 0.9074 5.1619 28 6 3.5016 -0.3944 1.5980 29 6 4.4781 -1.5250 1.2674 30 6 3.9670 0.9662 1.0755 31 1 -0.3633 -1.0235 0.0921 32 1 -0.3634 0.5915 0.8403 33 1 -0.3634 0.4320 -0.9325 34 1 2.2491 -1.6317 -1.1525 35 1 2.8276 -1.5947 -3.4138 36 1 1.7561 0.4196 -5.0512 37 1 3.3905 0.9364 -4.5714 38 1 0.1664 -1.8976 -7.5025 39 1 5.3315 0.1976 -5.6728 40 1 5.4017 -1.4891 -6.4153 41 1 3.5423 -0.8597 -8.0218 42 1 3.4724 0.8273 -7.2796 43 1 1.4789 1.0464 2.4561 44 1 0.8548 -0.5298 3.1080 45 1 3.8023 1.6277 5.6363 46 1 4.4385 -1.7385 0.1993 47 1 5.4892 -1.2233 1.5407 48 1 4.2022 -2.4187 1.8271 49 1 3.3444 1.7520 1.5034 50 1 5.0059 1.1294 1.3617 51 1 3.8819 0.9866 -0.0110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594529329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:26 Heat of formation + Delta-G solvation = -107.118452 kcal Electronic energy + Delta-G solvation = -30789.667901 eV Core-core repulsion = 26689.372116 eV Total energy + Delta-G solvation = -4100.295785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34101 -40.89656 -39.84629 -38.49960 -37.02779 -35.84756 -34.84644 -33.96925 -32.15737 -31.13067 -28.42722 -27.90960 -27.86304 -27.00402 -24.53909 -23.10024 -22.90769 -21.86509 -21.45312 -21.17830 -19.62737 -19.09666 -18.60272 -18.05871 -17.52084 -17.07317 -16.72172 -16.61220 -16.34090 -15.92568 -15.52454 -15.42222 -15.36136 -14.75805 -14.65510 -14.34410 -14.16993 -14.01749 -13.89257 -13.52603 -13.43816 -13.22218 -13.06144 -12.87331 -12.84246 -12.72827 -12.65064 -12.52558 -12.28169 -12.23776 -12.19578 -11.99447 -11.76035 -11.42161 -11.25915 -11.16970 -10.99695 -10.90082 -10.79576 -10.42179 -10.18882 -9.95043 -9.44173 -8.07574 -6.22157 1.26401 1.43995 1.48036 1.57107 1.95420 2.22485 2.37168 2.44955 3.20430 3.27865 3.38369 3.46735 3.57805 3.69364 3.81255 4.18132 4.25858 4.29121 4.36854 4.49202 4.52127 4.54925 4.57977 4.68043 4.71262 4.74374 4.76788 4.83282 4.87398 4.95439 5.01121 5.02542 5.05321 5.11452 5.16396 5.19388 5.26560 5.28784 5.39286 5.43287 5.50370 5.51855 5.65398 5.75245 5.76319 5.78703 5.85838 6.29428 6.40551 6.86773 7.08270 7.37966 7.48502 7.82244 9.00524 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.002730 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.690677 B =10254.254557 C =10731.625412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.169 3.831 3 H 0.064 0.936 4 N -0.726 5.726 5 C 0.695 3.305 6 O -0.649 6.649 7 N -0.714 5.714 8 C 0.200 3.800 9 C 0.006 3.994 10 C -0.501 4.501 11 H 0.068 0.932 12 C 0.028 3.972 13 N -0.907 5.907 14 Si 0.950 3.050 15 H -0.255 1.255 16 H -0.287 1.287 17 H -0.291 1.291 18 C -0.183 4.183 19 C -0.157 4.157 20 C -0.100 4.100 21 H 0.131 0.869 22 C -0.102 4.102 23 C -0.099 4.099 24 H 0.156 0.844 25 C 0.486 3.514 26 O -0.542 6.542 27 O -0.514 6.514 28 C -0.060 4.060 29 C -0.136 4.136 30 C -0.108 4.108 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.024 0.976 34 H 0.407 0.593 35 H 0.407 0.593 36 H 0.019 0.981 37 H 0.035 0.965 38 H 0.257 0.743 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.115 0.885 45 H 0.423 0.577 46 H 0.057 0.943 47 H 0.047 0.953 48 H 0.084 0.916 49 H 0.042 0.958 50 H 0.055 0.945 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.338 -2.262 25.079 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.064 3.936 3 H 0.082 0.918 4 N -0.382 5.382 5 C 0.395 3.605 6 O -0.533 6.533 7 N -0.368 5.368 8 C 0.074 3.926 9 C 0.005 3.995 10 C -0.538 4.538 11 H 0.086 0.914 12 C -0.173 4.173 13 N -0.544 5.544 14 Si 0.776 3.224 15 H -0.179 1.179 16 H -0.213 1.213 17 H -0.217 1.217 18 C -0.220 4.220 19 C -0.196 4.196 20 C -0.118 4.118 21 H 0.149 0.851 22 C -0.140 4.140 23 C -0.117 4.117 24 H 0.173 0.827 25 C 0.330 3.670 26 O -0.432 6.432 27 O -0.328 6.328 28 C -0.060 4.060 29 C -0.193 4.193 30 C -0.165 4.165 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.043 0.957 34 H 0.243 0.757 35 H 0.244 0.756 36 H 0.038 0.962 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.133 0.867 45 H 0.284 0.716 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.103 0.897 49 H 0.061 0.939 50 H 0.074 0.926 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.996 -1.310 24.513 24.629 hybrid contribution -0.003 -0.459 -0.483 0.666 sum 1.994 -1.769 24.030 24.177 Atomic orbital electron populations 1.22149 0.95229 1.02984 1.01332 1.20824 0.93755 0.96446 0.82601 0.91776 1.44976 1.71455 1.13876 1.07854 1.16230 0.78233 0.84705 0.81337 1.90819 1.59923 1.16803 1.85715 1.44975 1.69234 1.14472 1.08083 1.20292 0.97453 0.92253 0.82554 1.19131 0.92877 0.94975 0.92501 1.20617 1.08429 0.92222 1.32557 0.91433 1.25707 0.97486 1.00255 0.93857 1.70143 1.14494 1.35477 1.34270 0.85632 0.78250 0.80967 0.77538 1.17892 1.21286 1.21723 1.23067 0.92050 1.01989 1.04866 1.22383 1.03879 0.98304 0.94999 1.22951 0.94542 1.01886 0.92452 0.85097 1.22831 0.94827 1.01553 0.94749 1.22818 0.97814 0.97747 0.93334 0.82657 1.23760 0.78668 0.84289 0.80322 1.90763 1.34010 1.47258 1.71207 1.84519 1.66950 1.56438 1.24859 1.21800 0.95514 0.96251 0.92403 1.21772 0.98081 0.97259 1.02228 1.21536 1.01277 0.95157 0.98507 0.90770 0.89985 0.95684 0.75731 0.75565 0.96248 0.94724 0.93367 0.89714 0.89700 0.91710 0.91474 0.90428 0.86693 0.71605 0.92410 0.93414 0.89708 0.93856 0.92576 0.94954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.25 71.98 0.67 -2.87 16 2 C 0.17 3.93 1.74 44.99 0.08 4.00 16 3 H 0.06 1.91 5.60 -2.39 -0.01 1.89 16 4 N -0.73 -19.94 5.08 -457.82 -2.33 -22.27 16 5 C 0.70 27.18 8.53 179.06 1.53 28.70 16 6 O -0.65 -30.95 16.01 -3.98 -0.06 -31.01 16 7 N -0.71 -28.95 5.37 -478.54 -2.57 -31.53 16 8 C 0.20 9.38 5.75 86.38 0.50 9.88 16 9 C 0.01 0.28 1.79 -52.93 -0.09 0.18 16 10 C -0.50 -24.75 7.38 25.60 0.19 -24.56 16 11 H 0.07 3.18 7.81 -2.91 -0.02 3.16 16 12 C 0.03 1.44 5.43 84.65 0.46 1.90 16 13 N -0.91 -50.66 12.72 21.45 0.27 -50.39 16 14 Si 0.95 40.63 29.54 68.60 2.03 42.66 16 15 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 16 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 18 C -0.18 -7.53 9.88 30.59 0.30 -7.23 16 19 C -0.16 -7.36 9.26 30.60 0.28 -7.07 16 20 C -0.10 -1.42 2.78 -10.27 -0.03 -1.45 16 21 H 0.13 1.22 8.10 -2.39 -0.02 1.20 16 22 C -0.10 -1.15 6.14 31.12 0.19 -0.96 16 23 C -0.10 -1.21 3.76 -11.01 -0.04 -1.25 16 24 H 0.16 1.02 7.97 -2.38 -0.02 1.00 16 25 C 0.49 8.01 7.52 71.24 0.54 8.55 16 26 O -0.54 -13.05 13.56 21.97 0.30 -12.75 16 27 O -0.51 -5.79 13.42 -51.34 -0.69 -6.48 16 28 C -0.06 -1.01 1.19 -51.66 -0.06 -1.07 16 29 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 30 C -0.11 -2.70 5.98 71.98 0.43 -2.27 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.44 7.73 -2.39 -0.02 1.42 16 33 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.41 8.79 8.62 -92.71 -0.80 7.99 16 35 H 0.41 15.21 7.37 -92.71 -0.68 14.53 16 36 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.03 1.61 7.94 -2.39 -0.02 1.59 16 38 H 0.26 13.92 8.32 -92.71 -0.77 13.14 16 39 H 0.08 3.17 8.08 -2.39 -0.02 3.15 16 40 H 0.08 3.36 8.14 -2.39 -0.02 3.35 16 41 H 0.06 3.26 8.14 -2.39 -0.02 3.24 16 42 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.08 1.11 7.56 -2.39 -0.02 1.10 16 44 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.42 1.74 9.10 -74.06 -0.67 1.07 16 46 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.08 0.82 7.95 -2.39 -0.02 0.80 16 49 H 0.04 1.13 6.33 -2.39 -0.02 1.12 16 50 H 0.06 1.54 6.88 -2.39 -0.02 1.53 16 51 H 0.03 0.97 7.12 -2.39 -0.02 0.95 16 Total: -1.00 -72.25 408.34 1.34 -70.91 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -1.20 Total: 37.79 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.59 Total: 3.07 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -4.63 Total: -104.19 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -0.46 Total: -50.24 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -72.25 1.34 -70.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594529329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.211 kcal (2) G-P(sol) polarization free energy of solvation -72.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds