Wall clock time and date at job start Tue Mar 31 2020 21:55:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34230 * 116.99551 * 2 1
4 4 O 1.20828 * 120.00337 * 359.97438 * 3 2 1
5 5 C 1.50703 * 120.00190 * 180.02562 * 3 2 1
6 6 H 1.08994 * 115.55091 * 63.37972 * 5 3 2
7 7 C 1.53057 * 117.53236 * 209.13661 * 5 3 2
8 8 C 1.52738 * 59.94415 * 107.45130 * 7 5 3
9 9 C 1.53231 * 117.83323 * 252.26779 * 8 7 5
10 10 C 1.53249 * 108.62456 * 163.02122 * 9 8 7
11 11 N 1.46804 * 109.45607 * 55.56669 * 10 9 8
12 12 C 1.46900 * 111.00481 * 170.80363 * 11 10 9
13 13 H 1.09004 * 109.46746 * 297.12566 * 12 11 10
14 14 C 1.53003 * 109.47640 * 177.12453 * 12 11 10
15 15 C 1.50707 * 109.47216 * 57.12200 * 12 11 10
16 16 O 1.21274 * 119.99557 * 15.09877 * 15 12 11
17 17 N 1.34769 * 119.99902 * 195.10404 * 15 12 11
18 18 C 1.46502 * 120.00397 * 359.97438 * 17 15 12
19 19 C 1.46503 * 119.99733 * 179.97438 * 17 15 12
20 20 C 1.50698 * 109.47139 * 269.99726 * 19 17 15
21 21 H 1.07993 * 119.99877 * 359.97438 * 20 19 17
22 22 C 1.37881 * 119.99913 * 179.97438 * 20 19 17
23 23 N 1.31517 * 119.99926 * 179.97438 * 22 20 19
24 24 Si 1.86803 * 119.99851 * 359.72399 * 22 20 19
25 25 H 1.48495 * 109.47252 * 270.27320 * 24 22 20
26 26 H 1.48494 * 109.47172 * 30.27750 * 24 22 20
27 27 H 1.48504 * 109.46665 * 150.27415 * 24 22 20
28 28 C 1.46817 * 111.58243 * 295.18315 * 11 10 9
29 29 C 1.53204 * 117.84852 * 107.73867 * 8 7 5
30 30 H 1.08997 * 109.47145 * 60.00326 * 1 2 3
31 31 H 1.09010 * 109.46946 * 179.97438 * 1 2 3
32 32 H 1.08996 * 109.47732 * 300.00241 * 1 2 3
33 33 H 1.08991 * 117.50681 * 359.97438 * 7 5 3
34 34 H 1.09004 * 117.50184 * 214.92175 * 7 5 3
35 35 H 1.08996 * 109.60913 * 43.27731 * 9 8 7
36 36 H 1.08998 * 109.60960 * 282.75720 * 9 8 7
37 37 H 1.08999 * 109.47468 * 295.56795 * 10 9 8
38 38 H 1.08998 * 109.47344 * 175.56191 * 10 9 8
39 39 H 1.08999 * 109.46782 * 59.99200 * 14 12 11
40 40 H 1.08990 * 109.47129 * 180.02562 * 14 12 11
41 41 H 1.09003 * 109.46633 * 299.99743 * 14 12 11
42 42 H 1.08992 * 109.47325 * 270.00671 * 18 17 15
43 43 H 1.09005 * 109.46760 * 30.00514 * 18 17 15
44 44 H 1.09003 * 109.46738 * 150.00323 * 18 17 15
45 45 H 1.09003 * 109.47141 * 149.99367 * 19 17 15
46 46 H 1.09002 * 109.46890 * 30.00052 * 19 17 15
47 47 H 0.96994 * 119.99559 * 179.72180 * 23 22 20
48 48 H 1.09002 * 109.47432 * 184.81100 * 28 11 10
49 49 H 1.09001 * 109.47177 * 304.81937 * 28 11 10
50 50 H 1.09007 * 109.61037 * 316.72036 * 29 8 7
51 51 H 1.08997 * 109.61352 * 77.23203 * 29 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4032 2.2094 -0.0005
5 6 3.5663 1.2751 -0.0006
6 1 4.0585 0.8599 -0.8800
7 6 4.2109 2.4959 0.6602
8 6 4.2808 1.1309 1.3420
9 6 3.4190 0.9093 2.5895
10 6 3.3101 -0.5973 2.8478
11 7 4.6561 -1.1734 2.9560
12 6 4.5969 -2.5668 3.4175
13 1 4.1671 -2.5999 4.4187
14 6 6.0093 -3.1541 3.4491
15 6 3.7390 -3.3720 2.4757
16 8 3.4538 -2.9265 1.3844
17 7 3.2887 -4.5869 2.8464
18 6 3.6336 -5.1253 4.1645
19 6 2.4542 -5.3694 1.9311
20 6 1.0031 -5.0383 2.1669
21 1 0.7298 -4.3175 2.9232
22 6 0.0245 -5.6556 1.4171
23 7 -1.2420 -5.3670 1.6233
24 14 0.4978 -6.8966 0.1036
25 1 0.7049 -6.1951 -1.1887
26 1 1.7532 -7.5833 0.5008
27 1 -0.5884 -7.8983 -0.0453
28 6 5.3914 -1.0695 1.6895
29 6 5.6312 0.4075 1.3584
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0278 -0.0005
32 1 -0.3634 0.5138 0.8899
33 1 3.5465 3.2424 1.0952
34 1 5.1273 2.8839 0.2154
35 1 2.4249 1.3253 2.4260
36 1 3.8851 1.3947 3.4470
37 1 2.7778 -1.0700 2.0224
38 1 2.7659 -0.7684 3.7765
39 1 6.6298 -2.5717 4.1302
40 1 5.9653 -4.1881 3.7911
41 1 6.4390 -3.1210 2.4479
42 1 4.5618 -5.6922 4.0939
43 1 3.7621 -4.3043 4.8700
44 1 2.8335 -5.7797 4.5104
45 1 2.6180 -6.4323 2.1088
46 1 2.7194 -5.1281 0.9017
47 1 -1.9301 -5.7983 1.0930
48 1 6.3493 -1.5814 1.7824
49 1 4.8087 -1.5308 0.8921
50 1 6.1029 0.4910 0.3793
51 1 6.2754 0.8524 2.1167
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000609617364.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:55:12
Heat of formation + Delta-G solvation = -75.020682 kcal
Electronic energy + Delta-G solvation = -32247.326528 eV
Core-core repulsion = 28148.422607 eV
Total energy + Delta-G solvation = -4098.903921 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.83584 -39.97898 -38.47262 -36.50999 -35.84664 -34.84775 -32.77370 -31.94209
-30.92782 -28.77945 -28.10654 -27.64192 -26.06530 -24.63690 -23.97871 -22.92953
-22.27613 -20.95624 -20.48517 -18.93799 -18.28872 -17.33894 -16.97273 -16.58708
-16.50748 -16.46068 -15.72045 -14.95293 -14.87923 -14.68044 -14.44907 -14.13355
-13.86032 -13.73581 -13.39613 -13.15840 -12.84483 -12.81924 -12.46161 -12.37929
-12.29517 -12.24053 -12.00059 -11.86334 -11.77729 -11.57387 -11.43736 -11.32756
-11.24830 -10.93886 -10.72019 -10.55509 -10.52009 -10.50371 -10.20986 -10.14455
-9.99259 -9.76231 -9.60181 -9.47942 -8.61895 -7.71894 -7.69697 -6.11986
-4.10206 2.27807 2.84912 3.25983 3.30151 3.31981 3.34137 3.59487
3.85909 4.05352 4.36520 4.51597 4.56204 4.70508 4.84872 4.99734
5.07303 5.15226 5.22086 5.25642 5.40047 5.40802 5.46191 5.48452
5.49407 5.58047 5.61084 5.63661 5.72742 5.77819 5.83630 5.87052
5.91077 5.93691 5.96196 5.99081 6.08071 6.12022 6.17147 6.25024
6.44645 6.58061 6.62656 6.66728 6.91985 7.17746 7.29240 7.33316
7.58576 7.93677 8.23649 8.44305 8.89750 8.96938 9.48875 11.01274
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.010352 B = 0.004789 C = 0.003597
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2704.059618 B = 5845.903546 C = 7782.544507
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.335 6.335
3 C 0.493 3.507
4 O -0.518 6.518
5 C -0.160 4.160
6 H 0.136 0.864
7 C -0.142 4.142
8 C -0.085 4.085
9 C -0.077 4.077
10 C 0.039 3.961
11 N -0.510 5.510
12 C 0.061 3.939
13 H 0.101 0.899
14 C -0.143 4.143
15 C 0.479 3.521
16 O -0.531 6.531
17 N -0.595 5.595
18 C 0.082 3.918
19 C 0.215 3.785
20 C -0.524 4.524
21 H 0.073 0.927
22 C 0.073 3.927
23 N -0.898 5.898
24 Si 0.875 3.125
25 H -0.274 1.274
26 H -0.267 1.267
27 H -0.285 1.285
28 C 0.033 3.967
29 C -0.074 4.074
30 H 0.058 0.942
31 H 0.110 0.890
32 H 0.060 0.940
33 H 0.104 0.896
34 H 0.107 0.893
35 H 0.060 0.940
36 H 0.077 0.923
37 H 0.079 0.921
38 H 0.067 0.933
39 H 0.071 0.929
40 H 0.065 0.935
41 H 0.062 0.938
42 H 0.046 0.954
43 H 0.061 0.939
44 H 0.074 0.926
45 H 0.027 0.973
46 H 0.035 0.965
47 H 0.264 0.736
48 H 0.074 0.926
49 H 0.076 0.924
50 H 0.067 0.933
51 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.774 9.779 2.636 17.912
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.250 6.250
3 C 0.337 3.663
4 O -0.407 6.407
5 C -0.179 4.179
6 H 0.154 0.846
7 C -0.179 4.179
8 C -0.086 4.086
9 C -0.115 4.115
10 C -0.088 4.088
11 N -0.233 5.233
12 C -0.051 4.051
13 H 0.119 0.881
14 C -0.200 4.200
15 C 0.265 3.735
16 O -0.409 6.409
17 N -0.327 5.327
18 C -0.062 4.062
19 C 0.094 3.906
20 C -0.563 4.563
21 H 0.091 0.909
22 C -0.129 4.129
23 N -0.536 5.536
24 Si 0.702 3.298
25 H -0.200 1.200
26 H -0.191 1.191
27 H -0.211 1.211
28 C -0.094 4.094
29 C -0.111 4.111
30 H 0.076 0.924
31 H 0.128 0.872
32 H 0.079 0.921
33 H 0.122 0.878
34 H 0.125 0.875
35 H 0.078 0.922
36 H 0.096 0.904
37 H 0.097 0.903
38 H 0.086 0.914
39 H 0.090 0.910
40 H 0.084 0.916
41 H 0.081 0.919
42 H 0.064 0.936
43 H 0.080 0.920
44 H 0.093 0.907
45 H 0.045 0.955
46 H 0.053 0.947
47 H 0.074 0.926
48 H 0.092 0.908
49 H 0.094 0.906
50 H 0.086 0.914
51 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 14.441 10.498 2.343 18.007
hybrid contribution -0.843 -1.187 -1.291 1.946
sum 13.598 9.311 1.052 16.514
Atomic orbital electron populations
1.23335 0.75940 1.04684 1.01703 1.86668 1.23459 1.32050 1.82831
1.22616 0.90475 0.81611 0.71592 1.90627 1.67031 1.36764 1.46312
1.21896 0.88417 1.06870 1.00680 0.84585 1.23161 1.01949 0.90988
1.01833 1.21634 0.97367 0.98203 0.91378 1.21217 0.97862 0.96763
0.95645 1.22290 0.89975 0.93839 1.02707 1.62293 1.16964 1.14120
1.29946 1.21865 0.96454 0.88079 0.98705 0.88143 1.21868 0.94433
1.00862 1.02874 1.21602 0.81289 0.82061 0.88596 1.90615 1.58729
1.68567 1.22959 1.47969 1.50181 1.17892 1.16673 1.21729 1.00359
0.99284 0.84876 1.19640 0.90793 0.90299 0.89868 1.21294 0.88575
1.25224 1.21203 0.90893 1.24838 0.94788 0.96547 0.96720 1.69896
0.99574 1.43334 1.40844 0.86874 0.78400 0.81568 0.82970 1.19970
1.19149 1.21116 1.22438 0.98843 0.95677 0.92460 1.21229 0.93374
0.95137 1.01402 0.92353 0.87185 0.92108 0.87799 0.87452 0.92160
0.90414 0.90266 0.91435 0.91028 0.91567 0.91900 0.93561 0.92026
0.90691 0.95500 0.94693 0.92624 0.90782 0.90628 0.91389 0.90562
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.60 10.56 101.05 1.07 1.66 16
2 O -0.34 -6.11 10.25 -39.26 -0.40 -6.51 16
3 C 0.49 8.15 5.95 36.01 0.21 8.36 16
4 O -0.52 -9.31 16.40 -18.75 -0.31 -9.62 16
5 C -0.16 -2.13 5.98 -91.86 -0.55 -2.68 16
6 H 0.14 1.63 8.14 -51.93 -0.42 1.21 16
7 C -0.14 -1.54 9.52 -26.84 -0.26 -1.79 16
8 C -0.09 -1.05 2.02 -154.54 -0.31 -1.36 16
9 C -0.08 -1.05 5.52 -26.48 -0.15 -1.19 16
10 C 0.04 0.63 4.91 -3.75 -0.02 0.61 16
11 N -0.51 -7.21 4.63 -227.86 -1.05 -8.26 16
12 C 0.06 0.88 2.09 -68.86 -0.14 0.73 16
13 H 0.10 1.35 6.57 -51.93 -0.34 1.01 16
14 C -0.14 -1.60 8.61 37.16 0.32 -1.28 16
15 C 0.48 9.16 6.24 -10.99 -0.07 9.09 16
16 O -0.53 -12.03 11.52 5.56 0.06 -11.97 16
17 N -0.60 -11.75 2.86 -182.95 -0.52 -12.27 16
18 C 0.08 1.20 9.30 59.85 0.56 1.75 16
19 C 0.21 5.14 4.23 -5.19 -0.02 5.11 16
20 C -0.52 -14.71 9.94 -34.44 -0.34 -15.05 16
21 H 0.07 2.26 8.06 -52.49 -0.42 1.83 16
22 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16
23 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16
24 Si 0.87 21.34 27.46 -169.99 -4.67 16.67 16
25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16
26 H -0.27 -6.15 6.55 56.52 0.37 -5.78 16
27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
28 C 0.03 0.45 4.74 -3.74 -0.02 0.43 16
29 C -0.07 -0.81 5.87 -26.50 -0.16 -0.97 16
30 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16
31 H 0.11 1.82 8.14 -51.92 -0.42 1.40 16
32 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16
33 H 0.10 1.19 7.96 -51.93 -0.41 0.78 16
34 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16
35 H 0.06 0.88 6.85 -51.93 -0.36 0.53 16
36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
37 H 0.08 1.58 5.62 -51.93 -0.29 1.29 16
38 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16
39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
40 H 0.07 0.69 6.33 -51.93 -0.33 0.36 16
41 H 0.06 0.73 6.12 -51.93 -0.32 0.42 16
42 H 0.05 0.56 7.39 -51.93 -0.38 0.18 16
43 H 0.06 0.76 6.05 -51.93 -0.31 0.44 16
44 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16
45 H 0.03 0.62 7.15 -51.93 -0.37 0.25 16
46 H 0.04 0.90 6.84 -51.93 -0.36 0.54 16
47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
48 H 0.07 0.89 5.66 -51.93 -0.29 0.60 16
49 H 0.08 1.30 5.74 -51.93 -0.30 1.00 16
50 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16
51 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16
LS Contribution 392.79 15.07 5.92 5.92
Total: -1.00 -33.98 392.79 -8.46 -42.44
By element:
Atomic # 1 Polarization: 12.79 SS G_CDS: -8.29 Total: 4.50 kcal
Atomic # 6 Polarization: 5.40 SS G_CDS: 0.03 Total: 5.43 kcal
Atomic # 7 Polarization: -46.06 SS G_CDS: -0.80 Total: -46.86 kcal
Atomic # 8 Polarization: -27.45 SS G_CDS: -0.65 Total: -28.10 kcal
Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -33.98 -8.46 -42.44 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609617364.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.577 kcal
(2) G-P(sol) polarization free energy of solvation -33.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.557 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.021 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds