Wall clock time and date at job start Tue Mar 31 2020 21:55:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34230 * 116.99551 * 2 1
4 4 O 1.20828 * 120.00337 * 359.97438 * 3 2 1
5 5 C 1.50703 * 120.00190 * 180.02562 * 3 2 1
6 6 H 1.08994 * 115.55091 * 63.37972 * 5 3 2
7 7 C 1.53057 * 117.53236 * 209.13661 * 5 3 2
8 8 C 1.52738 * 59.94415 * 107.45130 * 7 5 3
9 9 C 1.53231 * 117.83323 * 252.26779 * 8 7 5
10 10 C 1.53249 * 108.62456 * 163.02122 * 9 8 7
11 11 N 1.46804 * 109.45607 * 55.56669 * 10 9 8
12 12 C 1.46900 * 111.00481 * 170.80363 * 11 10 9
13 13 H 1.09004 * 109.46746 * 297.12566 * 12 11 10
14 14 C 1.53003 * 109.47640 * 177.12453 * 12 11 10
15 15 C 1.50707 * 109.47216 * 57.12200 * 12 11 10
16 16 O 1.21274 * 119.99557 * 15.09877 * 15 12 11
17 17 N 1.34769 * 119.99902 * 195.10404 * 15 12 11
18 18 C 1.46502 * 120.00397 * 359.97438 * 17 15 12
19 19 C 1.46503 * 119.99733 * 179.97438 * 17 15 12
20 20 C 1.50698 * 109.47139 * 269.99726 * 19 17 15
21 21 H 1.07993 * 119.99877 * 359.97438 * 20 19 17
22 22 C 1.37881 * 119.99913 * 179.97438 * 20 19 17
23 23 N 1.31517 * 119.99926 * 179.97438 * 22 20 19
24 24 Si 1.86803 * 119.99851 * 359.72399 * 22 20 19
25 25 H 1.48495 * 109.47252 * 270.27320 * 24 22 20
26 26 H 1.48494 * 109.47172 * 30.27750 * 24 22 20
27 27 H 1.48504 * 109.46665 * 150.27415 * 24 22 20
28 28 C 1.46817 * 111.58243 * 295.18315 * 11 10 9
29 29 C 1.53204 * 117.84852 * 107.73867 * 8 7 5
30 30 H 1.08997 * 109.47145 * 60.00326 * 1 2 3
31 31 H 1.09010 * 109.46946 * 179.97438 * 1 2 3
32 32 H 1.08996 * 109.47732 * 300.00241 * 1 2 3
33 33 H 1.08991 * 117.50681 * 359.97438 * 7 5 3
34 34 H 1.09004 * 117.50184 * 214.92175 * 7 5 3
35 35 H 1.08996 * 109.60913 * 43.27731 * 9 8 7
36 36 H 1.08998 * 109.60960 * 282.75720 * 9 8 7
37 37 H 1.08999 * 109.47468 * 295.56795 * 10 9 8
38 38 H 1.08998 * 109.47344 * 175.56191 * 10 9 8
39 39 H 1.08999 * 109.46782 * 59.99200 * 14 12 11
40 40 H 1.08990 * 109.47129 * 180.02562 * 14 12 11
41 41 H 1.09003 * 109.46633 * 299.99743 * 14 12 11
42 42 H 1.08992 * 109.47325 * 270.00671 * 18 17 15
43 43 H 1.09005 * 109.46760 * 30.00514 * 18 17 15
44 44 H 1.09003 * 109.46738 * 150.00323 * 18 17 15
45 45 H 1.09003 * 109.47141 * 149.99367 * 19 17 15
46 46 H 1.09002 * 109.46890 * 30.00052 * 19 17 15
47 47 H 0.96994 * 119.99559 * 179.72180 * 23 22 20
48 48 H 1.09002 * 109.47432 * 184.81100 * 28 11 10
49 49 H 1.09001 * 109.47177 * 304.81937 * 28 11 10
50 50 H 1.09007 * 109.61037 * 316.72036 * 29 8 7
51 51 H 1.08997 * 109.61352 * 77.23203 * 29 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4032 2.2094 -0.0005
5 6 3.5663 1.2751 -0.0006
6 1 4.0585 0.8599 -0.8800
7 6 4.2109 2.4959 0.6602
8 6 4.2808 1.1309 1.3420
9 6 3.4190 0.9093 2.5895
10 6 3.3101 -0.5973 2.8478
11 7 4.6561 -1.1734 2.9560
12 6 4.5969 -2.5668 3.4175
13 1 4.1671 -2.5999 4.4187
14 6 6.0093 -3.1541 3.4491
15 6 3.7390 -3.3720 2.4757
16 8 3.4538 -2.9265 1.3844
17 7 3.2887 -4.5869 2.8464
18 6 3.6336 -5.1253 4.1645
19 6 2.4542 -5.3694 1.9311
20 6 1.0031 -5.0383 2.1669
21 1 0.7298 -4.3175 2.9232
22 6 0.0245 -5.6556 1.4171
23 7 -1.2420 -5.3670 1.6233
24 14 0.4978 -6.8966 0.1036
25 1 0.7049 -6.1951 -1.1887
26 1 1.7532 -7.5833 0.5008
27 1 -0.5884 -7.8983 -0.0453
28 6 5.3914 -1.0695 1.6895
29 6 5.6312 0.4075 1.3584
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0278 -0.0005
32 1 -0.3634 0.5138 0.8899
33 1 3.5465 3.2424 1.0952
34 1 5.1273 2.8839 0.2154
35 1 2.4249 1.3253 2.4260
36 1 3.8851 1.3947 3.4470
37 1 2.7778 -1.0700 2.0224
38 1 2.7659 -0.7684 3.7765
39 1 6.6298 -2.5717 4.1302
40 1 5.9653 -4.1881 3.7911
41 1 6.4390 -3.1210 2.4479
42 1 4.5618 -5.6922 4.0939
43 1 3.7621 -4.3043 4.8700
44 1 2.8335 -5.7797 4.5104
45 1 2.6180 -6.4323 2.1088
46 1 2.7194 -5.1281 0.9017
47 1 -1.9301 -5.7983 1.0930
48 1 6.3493 -1.5814 1.7824
49 1 4.8087 -1.5308 0.8921
50 1 6.1029 0.4910 0.3793
51 1 6.2754 0.8524 2.1167
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000609617364.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:55:12
Heat of formation + Delta-G solvation = -98.144198 kcal
Electronic energy + Delta-G solvation = -32248.329239 eV
Core-core repulsion = 28148.422607 eV
Total energy + Delta-G solvation = -4099.906632 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.05802 -41.35201 -39.70686 -37.84529 -37.16681 -36.39889 -34.77388 -33.23764
-31.98963 -30.46479 -29.42008 -28.84821 -27.42580 -25.89691 -25.32544 -24.17922
-23.63870 -22.27099 -21.68002 -20.15858 -19.65030 -19.14301 -18.61280 -17.95223
-17.81736 -17.72620 -17.07012 -16.60392 -16.28607 -15.93076 -15.62886 -15.52885
-15.25057 -14.93732 -14.86088 -14.47344 -14.32594 -14.05805 -13.98230 -13.65232
-13.49559 -13.39053 -13.35086 -13.10666 -13.07400 -12.98057 -12.77084 -12.56380
-12.41213 -12.37495 -12.21206 -12.07812 -11.93016 -11.85348 -11.77652 -11.70159
-11.28730 -11.01168 -10.98445 -10.84230 -10.71022 -9.32074 -9.03889 -8.35210
-6.39223 0.98884 1.29363 1.33071 1.41236 1.65032 1.84767 2.28274
2.39539 2.61608 2.91854 2.99417 3.48628 3.56569 3.70038 3.77202
3.80459 3.93380 4.03945 4.09145 4.13758 4.20528 4.34291 4.39776
4.46948 4.52191 4.53579 4.57800 4.64448 4.74189 4.77130 4.82064
4.87619 4.87964 4.90358 4.92904 4.97714 4.98710 5.06771 5.11999
5.16897 5.24257 5.32812 5.35746 5.44911 5.47376 5.66446 5.98736
6.13620 6.24191 6.61171 6.61304 6.75984 7.21761 7.48962 8.81537
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.010352 B = 0.004789 C = 0.003597
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2704.059618 B = 5845.903546 C = 7782.544507
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.361 6.361
3 C 0.491 3.509
4 O -0.539 6.539
5 C -0.184 4.184
6 H 0.149 0.851
7 C -0.112 4.112
8 C -0.089 4.089
9 C -0.072 4.072
10 C 0.044 3.956
11 N -0.493 5.493
12 C 0.066 3.934
13 H 0.112 0.888
14 C -0.135 4.135
15 C 0.468 3.532
16 O -0.574 6.574
17 N -0.607 5.607
18 C 0.076 3.924
19 C 0.225 3.775
20 C -0.529 4.529
21 H 0.025 0.975
22 C 0.014 3.986
23 N -0.944 5.944
24 Si 0.944 3.056
25 H -0.279 1.279
26 H -0.239 1.239
27 H -0.276 1.276
28 C 0.032 3.968
29 C -0.065 4.065
30 H 0.075 0.925
31 H 0.095 0.905
32 H 0.062 0.938
33 H 0.097 0.903
34 H 0.145 0.855
35 H 0.039 0.961
36 H 0.099 0.901
37 H 0.032 0.968
38 H 0.057 0.943
39 H 0.099 0.901
40 H 0.078 0.922
41 H 0.058 0.942
42 H 0.083 0.917
43 H 0.087 0.913
44 H 0.061 0.939
45 H 0.045 0.955
46 H 0.015 0.985
47 H 0.267 0.733
48 H 0.095 0.905
49 H 0.035 0.965
50 H 0.090 0.910
51 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.899 9.946 3.181 21.592
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.276 6.276
3 C 0.336 3.664
4 O -0.429 6.429
5 C -0.203 4.203
6 H 0.167 0.833
7 C -0.148 4.148
8 C -0.089 4.089
9 C -0.110 4.110
10 C -0.084 4.084
11 N -0.216 5.216
12 C -0.046 4.046
13 H 0.130 0.870
14 C -0.192 4.192
15 C 0.256 3.744
16 O -0.454 6.454
17 N -0.339 5.339
18 C -0.066 4.066
19 C 0.103 3.897
20 C -0.567 4.567
21 H 0.044 0.956
22 C -0.184 4.184
23 N -0.584 5.584
24 Si 0.767 3.233
25 H -0.205 1.205
26 H -0.162 1.162
27 H -0.201 1.201
28 C -0.095 4.095
29 C -0.103 4.103
30 H 0.094 0.906
31 H 0.114 0.886
32 H 0.081 0.919
33 H 0.115 0.885
34 H 0.162 0.838
35 H 0.058 0.942
36 H 0.118 0.882
37 H 0.050 0.950
38 H 0.076 0.924
39 H 0.118 0.882
40 H 0.097 0.903
41 H 0.077 0.923
42 H 0.101 0.899
43 H 0.105 0.895
44 H 0.080 0.920
45 H 0.063 0.937
46 H 0.033 0.967
47 H 0.076 0.924
48 H 0.113 0.887
49 H 0.053 0.947
50 H 0.108 0.892
51 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 18.604 10.660 2.934 21.641
hybrid contribution -2.213 -1.183 -1.390 2.869
sum 16.390 9.477 1.545 18.996
Atomic orbital electron populations
1.23328 0.75685 1.04058 1.02681 1.86672 1.24201 1.33667 1.83107
1.23318 0.91885 0.80640 0.70552 1.90594 1.67868 1.37040 1.47416
1.22126 0.86109 1.09949 1.02110 0.83330 1.23292 1.02413 0.89581
0.99558 1.21722 0.97560 0.99856 0.89791 1.21146 0.97488 0.94838
0.97484 1.22128 0.90603 0.95428 1.00261 1.62421 1.15359 1.13648
1.30183 1.22059 0.97663 0.87360 0.97503 0.87014 1.21876 0.91996
1.01867 1.03450 1.22661 0.81146 0.81763 0.88851 1.90616 1.60248
1.69355 1.25190 1.48104 1.49628 1.18197 1.17935 1.22017 1.01423
1.00378 0.82816 1.19255 0.88746 0.91692 0.90047 1.21504 0.91370
1.23938 1.19932 0.95646 1.25783 0.94543 0.98884 0.99177 1.70049
1.00929 1.45056 1.42399 0.85769 0.79425 0.78961 0.79108 1.20472
1.16236 1.20075 1.22487 0.98723 0.97729 0.90600 1.21264 0.92706
0.92861 1.03425 0.90597 0.88629 0.91881 0.88488 0.83751 0.94244
0.88230 0.94979 0.92413 0.88243 0.90274 0.92336 0.89916 0.89491
0.91973 0.93719 0.96725 0.92399 0.88662 0.94701 0.89198 0.88152
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.26 10.56 113.37 1.20 2.46 16
2 O -0.36 -14.21 10.25 -51.42 -0.53 -14.73 16
3 C 0.49 16.87 5.95 71.24 0.42 17.29 16
4 O -0.54 -19.96 16.40 21.96 0.36 -19.60 16
5 C -0.18 -4.80 5.98 -11.60 -0.07 -4.87 16
6 H 0.15 3.44 8.14 -2.39 -0.02 3.42 16
7 C -0.11 -2.11 9.52 30.53 0.29 -1.82 16
8 C -0.09 -2.02 2.02 -52.20 -0.11 -2.13 16
9 C -0.07 -1.93 5.52 30.75 0.17 -1.76 16
10 C 0.04 1.44 4.91 86.40 0.42 1.87 16
11 N -0.49 -13.29 4.63 -874.82 -4.05 -17.34 16
12 C 0.07 1.80 2.09 44.17 0.09 1.89 16
13 H 0.11 2.77 6.57 -2.38 -0.02 2.75 16
14 C -0.13 -2.51 8.61 71.98 0.62 -1.89 16
15 C 0.47 18.13 6.24 87.66 0.55 18.67 16
16 O -0.57 -27.31 11.52 -3.01 -0.03 -27.34 16
17 N -0.61 -23.99 2.86 -851.13 -2.43 -26.42 16
18 C 0.08 2.09 9.30 127.77 1.19 3.28 16
19 C 0.23 10.93 4.23 85.63 0.36 11.30 16
20 C -0.53 -31.08 9.94 25.60 0.25 -30.82 16
21 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16
22 C 0.01 0.83 5.47 84.66 0.46 1.30 16
23 N -0.94 -59.54 13.96 21.45 0.30 -59.24 16
24 Si 0.94 44.72 27.46 68.60 1.88 46.60 16
25 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16
26 H -0.24 -10.18 6.55 99.48 0.65 -9.53 16
27 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
28 C 0.03 0.81 4.74 86.40 0.41 1.22 16
29 C -0.07 -1.21 5.87 30.75 0.18 -1.03 16
30 H 0.08 2.33 8.13 -2.39 -0.02 2.32 16
31 H 0.10 3.55 8.14 -2.38 -0.02 3.53 16
32 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16
33 H 0.10 2.02 7.96 -2.39 -0.02 2.00 16
34 H 0.14 1.69 8.14 -2.38 -0.02 1.67 16
35 H 0.04 1.20 6.85 -2.39 -0.02 1.18 16
36 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16
37 H 0.03 1.38 5.62 -2.39 -0.01 1.36 16
38 H 0.06 1.92 8.09 -2.39 -0.02 1.90 16
39 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16
40 H 0.08 1.30 6.33 -2.39 -0.02 1.28 16
41 H 0.06 1.17 6.12 -2.39 -0.01 1.15 16
42 H 0.08 1.71 7.39 -2.39 -0.02 1.69 16
43 H 0.09 1.93 6.05 -2.38 -0.01 1.92 16
44 H 0.06 1.87 8.07 -2.39 -0.02 1.85 16
45 H 0.04 2.01 7.15 -2.39 -0.02 1.99 16
46 H 0.01 0.77 6.84 -2.39 -0.02 0.75 16
47 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16
48 H 0.10 1.99 5.66 -2.39 -0.01 1.98 16
49 H 0.03 1.21 5.74 -2.39 -0.01 1.19 16
50 H 0.09 1.33 8.08 -2.38 -0.02 1.31 16
51 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16
Total: -1.00 -81.02 392.79 2.82 -78.20
By element:
Atomic # 1 Polarization: 24.05 SS G_CDS: 0.87 Total: 24.93 kcal
Atomic # 6 Polarization: 8.49 SS G_CDS: 6.45 Total: 14.94 kcal
Atomic # 7 Polarization: -96.82 SS G_CDS: -6.18 Total: -103.00 kcal
Atomic # 8 Polarization: -61.47 SS G_CDS: -0.20 Total: -61.67 kcal
Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal
Total: -81.02 2.82 -78.20 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609617364.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.947 kcal
(2) G-P(sol) polarization free energy of solvation -81.018 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.965 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.144 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds