Wall clock time and date at job start Tue Mar 31 2020 21:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00080 * 2 1 4 4 O 1.20825 * 119.99993 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00201 * 179.97438 * 3 2 1 6 6 H 1.08996 * 115.56252 * 34.27832 * 5 3 2 7 7 C 1.53040 * 117.50475 * 248.55745 * 5 3 2 8 8 C 1.52729 * 117.50535 * 179.97438 * 5 3 2 9 9 C 1.53221 * 117.84405 * 359.73239 * 8 5 3 10 10 C 1.53255 * 108.62079 * 162.99124 * 9 8 5 11 11 N 1.46813 * 109.44843 * 55.59697 * 10 9 8 12 12 C 1.46898 * 111.00050 * 170.80534 * 11 10 9 13 13 H 1.09002 * 109.46993 * 295.31333 * 12 11 10 14 14 C 1.53001 * 109.46925 * 175.31404 * 12 11 10 15 15 C 1.50701 * 109.47181 * 55.31176 * 12 11 10 16 16 O 1.21276 * 119.99955 * 25.49910 * 15 12 11 17 17 N 1.34778 * 119.99782 * 205.50160 * 15 12 11 18 18 C 1.46493 * 120.00188 * 0.02562 * 17 15 12 19 19 C 1.46500 * 119.99812 * 179.97438 * 17 15 12 20 20 C 1.50701 * 109.47293 * 269.99900 * 19 17 15 21 21 H 1.08002 * 119.99708 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00124 * 179.97438 * 20 19 17 23 23 N 1.31512 * 120.00213 * 180.27939 * 22 20 19 24 24 Si 1.86800 * 119.99767 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47024 * 90.00249 * 24 22 20 26 26 H 1.48502 * 109.47072 * 209.99899 * 24 22 20 27 27 H 1.48496 * 109.47383 * 329.99913 * 24 22 20 28 28 C 1.46812 * 111.56955 * 295.17658 * 11 10 9 29 29 C 1.53207 * 117.84888 * 215.22355 * 8 5 3 30 30 H 1.09002 * 109.47286 * 60.00280 * 1 2 3 31 31 H 1.09002 * 109.47192 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47574 * 300.00226 * 1 2 3 33 33 H 1.09002 * 117.50903 * 145.06119 * 7 5 3 34 34 H 1.09005 * 117.50987 * 359.97438 * 7 5 3 35 35 H 1.08996 * 109.61190 * 43.24962 * 9 8 5 36 36 H 1.09000 * 109.61143 * 282.72803 * 9 8 5 37 37 H 1.09007 * 109.47569 * 295.60798 * 10 9 8 38 38 H 1.09007 * 109.48242 * 175.59480 * 10 9 8 39 39 H 1.08993 * 109.47312 * 59.99701 * 14 12 11 40 40 H 1.09007 * 109.46836 * 180.02562 * 14 12 11 41 41 H 1.09006 * 109.46798 * 299.99566 * 14 12 11 42 42 H 1.09000 * 109.47267 * 269.99860 * 18 17 15 43 43 H 1.09005 * 109.47394 * 29.99671 * 18 17 15 44 44 H 1.09001 * 109.47546 * 150.00356 * 18 17 15 45 45 H 1.08997 * 109.46934 * 149.99629 * 19 17 15 46 46 H 1.09003 * 109.46927 * 29.99882 * 19 17 15 47 47 H 0.96998 * 120.00430 * 179.72663 * 23 22 20 48 48 H 1.08999 * 109.47157 * 184.82017 * 28 11 10 49 49 H 1.08998 * 109.47147 * 304.83218 * 28 11 10 50 50 H 1.08993 * 109.61550 * 316.75028 * 29 8 5 51 51 H 1.08998 * 109.61232 * 77.09771 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0788 0.4880 -0.5528 7 6 4.2457 1.8077 1.2642 8 6 4.1998 2.6646 -0.0001 9 6 3.2638 3.8777 -0.0076 10 6 4.0625 5.1146 0.4178 11 7 5.2284 5.2696 -0.4609 12 6 5.8960 6.5572 -0.2275 13 1 5.2253 7.3699 -0.5062 14 6 7.1682 6.6328 -1.0740 15 6 6.2549 6.6799 1.2310 16 8 6.4229 5.6824 1.9001 17 7 6.3893 7.8981 1.7917 18 6 6.1858 9.1029 0.9836 19 6 6.7377 8.0174 3.2097 20 6 5.4775 8.0543 4.0352 21 1 4.5134 7.9944 3.5520 22 6 5.5552 8.1634 5.4075 23 7 4.4556 8.1900 6.1284 24 14 7.2227 8.2662 6.2432 25 1 7.6331 9.6889 6.3555 26 1 7.1343 7.6680 7.5995 27 1 8.2261 7.5235 5.4391 28 6 6.1702 4.1536 -0.3098 29 6 5.5039 2.8563 -0.7809 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 5.2052 1.3715 1.5421 34 1 3.6041 2.1016 2.0950 35 1 2.4450 3.7123 0.6925 36 1 2.8659 4.0266 -1.0114 37 1 4.3974 4.9943 1.4482 38 1 3.4302 5.9993 0.3422 39 1 6.9086 6.5440 -2.1289 40 1 7.6638 7.5880 -0.9005 41 1 7.8389 5.8200 -0.7952 42 1 7.1330 9.4051 0.5369 43 1 5.4627 8.8938 0.1952 44 1 5.8103 9.9064 1.6172 45 1 7.3033 8.9354 3.3688 46 1 7.3428 7.1613 3.5083 47 1 4.5104 8.2628 7.0941 48 1 7.0593 4.3446 -0.9107 49 1 6.4538 4.0568 0.7382 50 1 6.1698 2.0141 -0.5935 51 1 5.2860 2.9202 -1.8470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609617365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:15 Heat of formation + Delta-G solvation = -70.904927 kcal Electronic energy + Delta-G solvation = -31226.873466 eV Core-core repulsion = 27128.148018 eV Total energy + Delta-G solvation = -4098.725449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99654 -40.07363 -38.58987 -36.69519 -35.87992 -34.83116 -32.73970 -31.97688 -30.82744 -28.85989 -28.33428 -27.74297 -26.02001 -24.54012 -24.20920 -22.82376 -22.54521 -21.09442 -20.42351 -18.89480 -18.14842 -17.75232 -16.95549 -16.64215 -16.56913 -16.45022 -16.04336 -14.97547 -14.79801 -14.63712 -14.62892 -14.17811 -13.87110 -13.77024 -13.39979 -13.30857 -13.05761 -12.93913 -12.49939 -12.39853 -12.30034 -12.23108 -12.01034 -11.99203 -11.79431 -11.69942 -11.48021 -11.37322 -11.19965 -10.98636 -10.87002 -10.76990 -10.52145 -10.41604 -10.12079 -10.04965 -9.88968 -9.73263 -9.56846 -9.45653 -8.60845 -7.72630 -7.68741 -6.09953 -4.08768 2.00834 2.51302 3.25020 3.29650 3.33337 3.37333 3.63473 3.86381 4.11090 4.38083 4.49448 4.56699 4.66891 4.89413 4.90338 4.96703 4.99208 5.01966 5.09722 5.23691 5.26919 5.30307 5.45239 5.51079 5.54273 5.63667 5.70820 5.73519 5.76923 5.83848 5.86792 5.90506 5.95249 6.00604 6.09228 6.15076 6.17432 6.21319 6.29857 6.44800 6.52219 6.63834 6.66674 6.95436 7.22276 7.33033 7.34897 7.59908 7.68391 8.23685 8.45706 8.91107 8.97097 9.50293 11.03375 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003263 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.298120 B = 8577.861195 C = 9920.477934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.490 3.510 4 O -0.496 6.496 5 C -0.172 4.172 6 H 0.132 0.868 7 C -0.137 4.137 8 C -0.074 4.074 9 C -0.071 4.071 10 C 0.043 3.957 11 N -0.511 5.511 12 C 0.059 3.941 13 H 0.101 0.899 14 C -0.140 4.140 15 C 0.482 3.518 16 O -0.539 6.539 17 N -0.595 5.595 18 C 0.080 3.920 19 C 0.214 3.786 20 C -0.527 4.527 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.897 5.897 24 Si 0.875 3.125 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.265 1.265 28 C 0.036 3.964 29 C -0.075 4.075 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.024 0.976 46 H 0.039 0.961 47 H 0.264 0.736 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.067 0.933 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.003 -11.462 -17.401 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.334 3.666 4 O -0.384 6.384 5 C -0.191 4.191 6 H 0.150 0.850 7 C -0.174 4.174 8 C -0.075 4.075 9 C -0.109 4.109 10 C -0.085 4.085 11 N -0.235 5.235 12 C -0.053 4.053 13 H 0.119 0.881 14 C -0.198 4.198 15 C 0.268 3.732 16 O -0.417 6.417 17 N -0.327 5.327 18 C -0.064 4.064 19 C 0.094 3.906 20 C -0.566 4.566 21 H 0.091 0.909 22 C -0.130 4.130 23 N -0.535 5.535 24 Si 0.702 3.298 25 H -0.201 1.201 26 H -0.210 1.210 27 H -0.189 1.189 28 C -0.092 4.092 29 C -0.113 4.113 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.041 0.959 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.093 0.907 49 H 0.095 0.905 50 H 0.086 0.914 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.389 -11.676 -17.323 20.894 hybrid contribution 0.629 0.194 1.467 1.608 sum 0.240 -11.482 -15.856 19.578 Atomic orbital electron populations 1.23252 0.76409 1.03520 1.02645 1.86489 1.23294 1.33667 1.84223 1.22776 0.90585 0.81153 0.72098 1.90669 1.66967 1.35731 1.44999 1.21894 0.87929 1.01833 1.07411 0.85015 1.23188 1.01849 1.01455 0.90897 1.21682 0.97336 0.89417 0.99029 1.21393 0.95841 0.90664 1.02968 1.22315 0.91559 0.98116 0.96504 1.62344 1.07773 1.00687 1.52690 1.21935 0.97471 0.94214 0.91672 0.88109 1.21824 0.95668 1.02423 0.99895 1.21578 0.77858 0.83617 0.90129 1.90581 1.50972 1.35808 1.64352 1.47994 1.67716 1.05073 1.11881 1.21737 1.00001 0.88908 0.95729 1.19651 0.97120 0.96914 0.76959 1.21309 0.92950 1.50879 0.91436 0.90866 1.24859 0.96455 0.94526 0.97168 1.69896 1.27245 1.50284 1.06109 0.86865 0.84979 0.78561 0.79424 1.20119 1.20961 1.18927 1.22427 0.94584 0.89375 1.02790 1.21246 0.93098 0.97577 0.99391 0.91912 0.88238 0.91827 0.87138 0.87910 0.89427 0.91095 0.91971 0.91219 0.90984 0.91831 0.91771 0.93545 0.91912 0.90623 0.95857 0.94258 0.92579 0.90673 0.90536 0.91428 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.08 10.56 -39.25 -0.41 -4.50 16 3 C 0.49 6.31 7.72 36.01 0.28 6.58 16 4 O -0.50 -7.56 12.89 -18.75 -0.24 -7.80 16 5 C -0.17 -1.94 6.03 -91.89 -0.55 -2.50 16 6 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 7 C -0.14 -1.69 9.63 -26.81 -0.26 -1.95 16 8 C -0.07 -0.96 2.02 -154.53 -0.31 -1.27 16 9 C -0.07 -1.07 4.32 -26.49 -0.11 -1.18 16 10 C 0.04 0.72 4.87 -3.74 -0.02 0.70 16 11 N -0.51 -7.63 4.64 -227.85 -1.06 -8.69 16 12 C 0.06 0.88 2.23 -68.86 -0.15 0.73 16 13 H 0.10 1.40 6.04 -51.93 -0.31 1.08 16 14 C -0.14 -1.66 8.63 37.16 0.32 -1.34 16 15 C 0.48 9.50 5.98 -10.98 -0.07 9.44 16 16 O -0.54 -12.52 11.95 5.56 0.07 -12.46 16 17 N -0.59 -12.08 2.86 -182.96 -0.52 -12.61 16 18 C 0.08 1.22 9.96 59.84 0.60 1.81 16 19 C 0.21 5.23 4.23 -5.19 -0.02 5.21 16 20 C -0.53 -15.15 9.94 -34.44 -0.34 -15.50 16 21 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 22 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 23 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 24 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 28 C 0.04 0.50 4.68 -3.74 -0.02 0.48 16 29 C -0.08 -0.88 5.87 -26.49 -0.16 -1.03 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 33 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.09 1.44 6.00 -51.93 -0.31 1.13 16 36 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 37 H 0.06 1.28 6.22 -51.92 -0.32 0.96 16 38 H 0.07 1.18 8.09 -51.92 -0.42 0.76 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.69 7.76 -51.93 -0.40 0.29 16 41 H 0.06 0.79 6.12 -51.93 -0.32 0.47 16 42 H 0.05 0.58 8.06 -51.93 -0.42 0.16 16 43 H 0.06 0.81 5.84 -51.93 -0.30 0.50 16 44 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 45 H 0.02 0.54 7.50 -51.93 -0.39 0.15 16 46 H 0.04 1.04 6.48 -51.93 -0.34 0.70 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.08 0.94 5.64 -51.93 -0.29 0.65 16 49 H 0.08 1.33 5.70 -51.93 -0.30 1.03 16 50 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -34.69 392.43 -8.36 -43.05 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.36 Total: 3.56 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 0.15 Total: 3.58 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.81 Total: -48.28 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.59 Total: -24.76 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.69 -8.36 -43.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609617365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.859 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds