Wall clock time and date at job start Tue Mar 31 2020 21:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00080 * 2 1 4 4 O 1.20825 * 119.99993 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00201 * 179.97438 * 3 2 1 6 6 H 1.08996 * 115.56252 * 34.27832 * 5 3 2 7 7 C 1.53040 * 117.50475 * 248.55745 * 5 3 2 8 8 C 1.52729 * 117.50535 * 179.97438 * 5 3 2 9 9 C 1.53221 * 117.84405 * 359.73239 * 8 5 3 10 10 C 1.53255 * 108.62079 * 162.99124 * 9 8 5 11 11 N 1.46813 * 109.44843 * 55.59697 * 10 9 8 12 12 C 1.46898 * 111.00050 * 170.80534 * 11 10 9 13 13 H 1.09002 * 109.46993 * 295.31333 * 12 11 10 14 14 C 1.53001 * 109.46925 * 175.31404 * 12 11 10 15 15 C 1.50701 * 109.47181 * 55.31176 * 12 11 10 16 16 O 1.21276 * 119.99955 * 25.49910 * 15 12 11 17 17 N 1.34778 * 119.99782 * 205.50160 * 15 12 11 18 18 C 1.46493 * 120.00188 * 0.02562 * 17 15 12 19 19 C 1.46500 * 119.99812 * 179.97438 * 17 15 12 20 20 C 1.50701 * 109.47293 * 269.99900 * 19 17 15 21 21 H 1.08002 * 119.99708 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00124 * 179.97438 * 20 19 17 23 23 N 1.31512 * 120.00213 * 180.27939 * 22 20 19 24 24 Si 1.86800 * 119.99767 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47024 * 90.00249 * 24 22 20 26 26 H 1.48502 * 109.47072 * 209.99899 * 24 22 20 27 27 H 1.48496 * 109.47383 * 329.99913 * 24 22 20 28 28 C 1.46812 * 111.56955 * 295.17658 * 11 10 9 29 29 C 1.53207 * 117.84888 * 215.22355 * 8 5 3 30 30 H 1.09002 * 109.47286 * 60.00280 * 1 2 3 31 31 H 1.09002 * 109.47192 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47574 * 300.00226 * 1 2 3 33 33 H 1.09002 * 117.50903 * 145.06119 * 7 5 3 34 34 H 1.09005 * 117.50987 * 359.97438 * 7 5 3 35 35 H 1.08996 * 109.61190 * 43.24962 * 9 8 5 36 36 H 1.09000 * 109.61143 * 282.72803 * 9 8 5 37 37 H 1.09007 * 109.47569 * 295.60798 * 10 9 8 38 38 H 1.09007 * 109.48242 * 175.59480 * 10 9 8 39 39 H 1.08993 * 109.47312 * 59.99701 * 14 12 11 40 40 H 1.09007 * 109.46836 * 180.02562 * 14 12 11 41 41 H 1.09006 * 109.46798 * 299.99566 * 14 12 11 42 42 H 1.09000 * 109.47267 * 269.99860 * 18 17 15 43 43 H 1.09005 * 109.47394 * 29.99671 * 18 17 15 44 44 H 1.09001 * 109.47546 * 150.00356 * 18 17 15 45 45 H 1.08997 * 109.46934 * 149.99629 * 19 17 15 46 46 H 1.09003 * 109.46927 * 29.99882 * 19 17 15 47 47 H 0.96998 * 120.00430 * 179.72663 * 23 22 20 48 48 H 1.08999 * 109.47157 * 184.82017 * 28 11 10 49 49 H 1.08998 * 109.47147 * 304.83218 * 28 11 10 50 50 H 1.08993 * 109.61550 * 316.75028 * 29 8 5 51 51 H 1.08998 * 109.61232 * 77.09771 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0788 0.4880 -0.5528 7 6 4.2457 1.8077 1.2642 8 6 4.1998 2.6646 -0.0001 9 6 3.2638 3.8777 -0.0076 10 6 4.0625 5.1146 0.4178 11 7 5.2284 5.2696 -0.4609 12 6 5.8960 6.5572 -0.2275 13 1 5.2253 7.3699 -0.5062 14 6 7.1682 6.6328 -1.0740 15 6 6.2549 6.6799 1.2310 16 8 6.4229 5.6824 1.9001 17 7 6.3893 7.8981 1.7917 18 6 6.1858 9.1029 0.9836 19 6 6.7377 8.0174 3.2097 20 6 5.4775 8.0543 4.0352 21 1 4.5134 7.9944 3.5520 22 6 5.5552 8.1634 5.4075 23 7 4.4556 8.1900 6.1284 24 14 7.2227 8.2662 6.2432 25 1 7.6331 9.6889 6.3555 26 1 7.1343 7.6680 7.5995 27 1 8.2261 7.5235 5.4391 28 6 6.1702 4.1536 -0.3098 29 6 5.5039 2.8563 -0.7809 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 5.2052 1.3715 1.5421 34 1 3.6041 2.1016 2.0950 35 1 2.4450 3.7123 0.6925 36 1 2.8659 4.0266 -1.0114 37 1 4.3974 4.9943 1.4482 38 1 3.4302 5.9993 0.3422 39 1 6.9086 6.5440 -2.1289 40 1 7.6638 7.5880 -0.9005 41 1 7.8389 5.8200 -0.7952 42 1 7.1330 9.4051 0.5369 43 1 5.4627 8.8938 0.1952 44 1 5.8103 9.9064 1.6172 45 1 7.3033 8.9354 3.3688 46 1 7.3428 7.1613 3.5083 47 1 4.5104 8.2628 7.0941 48 1 7.0593 4.3446 -0.9107 49 1 6.4538 4.0568 0.7382 50 1 6.1698 2.0141 -0.5935 51 1 5.2860 2.9202 -1.8470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609617365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:14 Heat of formation + Delta-G solvation = -94.825055 kcal Electronic energy + Delta-G solvation = -31227.910721 eV Core-core repulsion = 27128.148018 eV Total energy + Delta-G solvation = -4099.762703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.05982 -41.38948 -39.75232 -37.84981 -37.04695 -36.43845 -34.78918 -33.31130 -31.97107 -30.51993 -29.51283 -28.67634 -27.43135 -25.85314 -25.28554 -24.24761 -23.87329 -22.51594 -21.44736 -20.15717 -19.50886 -19.16869 -18.72919 -18.01681 -17.68017 -17.48014 -17.21181 -16.66137 -16.24152 -15.94946 -15.71432 -15.60562 -15.23475 -14.90694 -14.84427 -14.46778 -14.25922 -14.14402 -14.03741 -13.69396 -13.54562 -13.44464 -13.29558 -13.19575 -13.02942 -12.92464 -12.87245 -12.61733 -12.48366 -12.42460 -12.16712 -12.10377 -11.94063 -11.81805 -11.75666 -11.51058 -11.15391 -11.04724 -10.92833 -10.85727 -10.73071 -9.38189 -9.09333 -8.37351 -6.42771 0.99080 1.28157 1.32784 1.43516 1.63871 1.78721 2.27643 2.35425 2.64120 2.90423 2.96677 3.49315 3.60514 3.66598 3.73255 3.86840 3.93648 4.03195 4.15767 4.27299 4.29210 4.34027 4.40296 4.46655 4.51044 4.57509 4.62236 4.66048 4.72772 4.74949 4.78724 4.84013 4.86154 4.87502 4.90979 4.93267 4.97503 5.05888 5.11598 5.12937 5.23621 5.30677 5.41275 5.43661 5.46243 5.62119 5.95864 6.11200 6.20927 6.58355 6.70323 6.70933 7.18506 7.43007 8.79811 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003263 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.298120 B = 8577.861195 C = 9920.477934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.486 3.514 4 O -0.528 6.528 5 C -0.148 4.148 6 H 0.168 0.832 7 C -0.147 4.147 8 C -0.089 4.089 9 C -0.061 4.061 10 C 0.051 3.949 11 N -0.498 5.498 12 C 0.064 3.936 13 H 0.114 0.886 14 C -0.132 4.132 15 C 0.472 3.528 16 O -0.583 6.583 17 N -0.607 5.607 18 C 0.074 3.926 19 C 0.225 3.775 20 C -0.535 4.535 21 H 0.022 0.978 22 C 0.009 3.991 23 N -0.946 5.946 24 Si 0.951 3.049 25 H -0.250 1.250 26 H -0.282 1.282 27 H -0.256 1.256 28 C 0.034 3.966 29 C -0.066 4.066 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.055 0.945 33 H 0.129 0.871 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.014 0.986 38 H 0.058 0.942 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.018 0.982 47 H 0.268 0.732 48 H 0.098 0.902 49 H 0.039 0.961 50 H 0.094 0.906 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 -12.142 -20.106 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.331 3.669 4 O -0.418 6.418 5 C -0.167 4.167 6 H 0.185 0.815 7 C -0.184 4.184 8 C -0.089 4.089 9 C -0.098 4.098 10 C -0.077 4.077 11 N -0.221 5.221 12 C -0.048 4.048 13 H 0.132 0.868 14 C -0.190 4.190 15 C 0.260 3.740 16 O -0.463 6.463 17 N -0.338 5.338 18 C -0.068 4.068 19 C 0.102 3.898 20 C -0.573 4.573 21 H 0.041 0.959 22 C -0.188 4.188 23 N -0.587 5.587 24 Si 0.773 3.227 25 H -0.174 1.174 26 H -0.208 1.208 27 H -0.180 1.180 28 C -0.093 4.093 29 C -0.103 4.103 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.073 0.927 33 H 0.147 0.853 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.077 0.923 48 H 0.116 0.884 49 H 0.058 0.942 50 H 0.112 0.888 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.035 -12.343 -20.078 23.657 hybrid contribution -0.309 0.384 2.311 2.363 sum 1.726 -11.959 -17.767 21.487 Atomic orbital electron populations 1.23539 0.74845 1.05721 1.02355 1.86479 1.24860 1.32637 1.83671 1.23136 0.91301 0.81159 0.71312 1.90666 1.67791 1.36843 1.46465 1.21978 0.87125 1.01385 1.06207 0.81500 1.23188 1.02477 1.02141 0.90559 1.21689 0.98003 0.89302 0.99949 1.21194 0.95409 0.91099 1.02126 1.22128 0.92533 0.98683 0.94372 1.62459 1.07389 1.01388 1.50827 1.22147 0.99445 0.94623 0.88609 0.86818 1.21838 0.93525 1.03118 1.00506 1.22611 0.76596 0.82699 0.92073 1.90571 1.52603 1.37262 1.65898 1.48142 1.67826 1.07181 1.10689 1.22029 1.02740 0.86531 0.95473 1.19277 0.94619 0.96753 0.79154 1.21537 0.92839 1.50634 0.92312 0.95914 1.25892 1.01125 0.93907 0.97917 1.70062 1.30167 1.51779 1.06643 0.85668 0.79241 0.79954 0.77809 1.17428 1.20774 1.17977 1.22487 0.95414 0.90243 1.01138 1.21253 0.92259 0.97025 0.99807 0.91750 0.84800 0.92654 0.85333 0.90491 0.91813 0.90789 0.96777 0.92377 0.88215 0.90376 0.92239 0.89702 0.89564 0.91836 0.93580 0.96384 0.92297 0.88382 0.94222 0.88782 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -7.77 10.56 -51.39 -0.54 -8.31 16 3 C 0.49 12.34 7.72 71.24 0.55 12.89 16 4 O -0.53 -16.60 12.89 21.97 0.28 -16.32 16 5 C -0.15 -3.15 6.03 -11.61 -0.07 -3.22 16 6 H 0.17 2.39 8.14 -2.39 -0.02 2.37 16 7 C -0.15 -3.67 9.63 30.54 0.29 -3.38 16 8 C -0.09 -2.26 2.02 -52.20 -0.11 -2.36 16 9 C -0.06 -1.90 4.32 30.75 0.13 -1.77 16 10 C 0.05 1.83 4.87 86.41 0.42 2.25 16 11 N -0.50 -14.60 4.64 -874.78 -4.06 -18.66 16 12 C 0.06 1.83 2.23 44.17 0.10 1.93 16 13 H 0.11 2.95 6.04 -2.39 -0.01 2.94 16 14 C -0.13 -2.67 8.63 71.98 0.62 -2.05 16 15 C 0.47 18.93 5.98 87.66 0.52 19.45 16 16 O -0.58 -28.40 11.95 -3.02 -0.04 -28.44 16 17 N -0.61 -24.78 2.86 -851.14 -2.43 -27.21 16 18 C 0.07 2.14 9.96 127.77 1.27 3.41 16 19 C 0.22 11.13 4.23 85.63 0.36 11.49 16 20 C -0.53 -32.21 9.94 25.60 0.25 -31.96 16 21 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 22 C 0.01 0.57 5.47 84.65 0.46 1.03 16 23 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 24 Si 0.95 45.17 27.47 68.60 1.88 47.06 16 25 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 27 H -0.26 -11.70 6.54 99.48 0.65 -11.05 16 28 C 0.03 0.92 4.68 86.41 0.40 1.33 16 29 C -0.07 -1.38 5.87 30.75 0.18 -1.19 16 30 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 33 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.06 2.29 6.00 -2.39 -0.01 2.27 16 36 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 37 H 0.01 0.63 6.22 -2.38 -0.01 0.62 16 38 H 0.06 2.12 8.09 -2.38 -0.02 2.11 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 1.38 7.76 -2.38 -0.02 1.36 16 41 H 0.06 1.28 6.12 -2.38 -0.01 1.26 16 42 H 0.08 1.82 8.06 -2.39 -0.02 1.80 16 43 H 0.09 2.05 5.84 -2.38 -0.01 2.03 16 44 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 45 H 0.05 2.07 7.50 -2.39 -0.02 2.05 16 46 H 0.02 0.97 6.48 -2.39 -0.02 0.96 16 47 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 48 H 0.10 2.18 5.64 -2.39 -0.01 2.17 16 49 H 0.04 1.41 5.70 -2.39 -0.01 1.39 16 50 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 51 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -82.79 392.43 2.86 -79.92 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.87 Total: 23.25 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.60 Total: 9.49 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -6.19 Total: -106.66 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.30 Total: -53.06 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Total: -82.79 2.86 -79.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609617365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.903 kcal (2) G-P(sol) polarization free energy of solvation -82.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds