Wall clock time and date at job start Tue Mar 31 2020 21:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00013 * 2 1 4 4 O 1.20828 * 120.00039 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99860 * 180.02562 * 3 2 1 6 6 H 1.08996 * 115.55690 * 55.48822 * 5 3 2 7 7 C 1.53059 * 117.52995 * 201.23878 * 5 3 2 8 8 C 1.52734 * 59.94299 * 107.45259 * 7 5 3 9 9 C 1.53227 * 117.83201 * 252.26280 * 8 7 5 10 10 C 1.53248 * 108.62640 * 163.02275 * 9 8 7 11 11 N 1.46813 * 109.45423 * 55.56759 * 10 9 8 12 12 C 1.46891 * 111.00414 * 170.80234 * 11 10 9 13 13 H 1.09004 * 109.47333 * 55.79059 * 12 11 10 14 14 C 1.53005 * 109.47542 * 175.79055 * 12 11 10 15 15 C 1.50699 * 109.47232 * 295.79449 * 12 11 10 16 16 O 1.21278 * 120.00077 * 334.85950 * 15 12 11 17 17 N 1.34784 * 120.00436 * 154.58441 * 15 12 11 18 18 C 1.46499 * 119.99266 * 0.02562 * 17 15 12 19 19 C 1.46492 * 120.00391 * 179.97438 * 17 15 12 20 20 C 1.50698 * 109.47057 * 89.99915 * 19 17 15 21 21 H 1.08004 * 120.00044 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00265 * 180.02562 * 20 19 17 23 23 N 1.31514 * 120.00052 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99789 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47086 * 90.00425 * 24 22 20 26 26 H 1.48505 * 109.47176 * 210.00183 * 24 22 20 27 27 H 1.48498 * 109.47420 * 330.00083 * 24 22 20 28 28 C 1.46814 * 111.58467 * 295.18704 * 11 10 9 29 29 C 1.53215 * 117.84538 * 107.73993 * 8 7 5 30 30 H 1.09001 * 109.47098 * 59.99643 * 1 2 3 31 31 H 1.08997 * 109.47566 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46930 * 299.99989 * 1 2 3 33 33 H 1.08998 * 117.50925 * 359.97438 * 7 5 3 34 34 H 1.09004 * 117.49913 * 214.92696 * 7 5 3 35 35 H 1.09007 * 109.60991 * 43.28306 * 9 8 7 36 36 H 1.08999 * 109.61221 * 282.76592 * 9 8 7 37 37 H 1.08998 * 109.47608 * 295.57668 * 10 9 8 38 38 H 1.09002 * 109.47533 * 175.56381 * 10 9 8 39 39 H 1.08995 * 109.47126 * 173.62814 * 14 12 11 40 40 H 1.08995 * 109.46784 * 293.63149 * 14 12 11 41 41 H 1.09003 * 109.46600 * 53.63090 * 14 12 11 42 42 H 1.09001 * 109.47390 * 90.00311 * 18 17 15 43 43 H 1.09007 * 109.46671 * 210.00163 * 18 17 15 44 44 H 1.08996 * 109.47485 * 329.99590 * 18 17 15 45 45 H 1.09000 * 109.47112 * 210.00035 * 19 17 15 46 46 H 1.08996 * 109.47170 * 330.00620 * 19 17 15 47 47 H 0.97004 * 120.00039 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.47572 * 184.80425 * 28 11 10 49 49 H 1.09001 * 109.47011 * 304.82018 * 28 11 10 50 50 H 1.08996 * 109.61128 * 316.71982 * 29 8 7 51 51 H 1.09000 * 109.60989 * 77.23100 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0648 0.7432 -0.8112 7 6 4.2069 2.5751 0.4911 8 6 4.2711 1.3166 1.3541 9 6 3.4004 1.2679 2.6140 10 6 3.2888 -0.1891 3.0759 11 7 4.6337 -0.7443 3.2717 12 6 4.5704 -2.0611 3.9197 13 1 3.9352 -2.7247 3.3329 14 6 5.9785 -2.6525 4.0117 15 6 3.9966 -1.9121 5.3052 16 8 4.0918 -0.8542 5.8905 17 7 3.3727 -2.9529 5.8918 18 6 3.2529 -4.2292 5.1826 19 6 2.8154 -2.8083 7.2389 20 6 1.3889 -2.3319 7.1438 21 1 0.9419 -2.1551 6.1767 22 6 0.6542 -2.1219 8.2915 23 7 -0.5909 -1.7067 8.2085 24 14 1.4270 -2.4285 9.9643 25 1 2.0731 -1.1816 10.4471 26 1 0.3755 -2.8457 10.9264 27 1 2.4467 -3.5019 9.8493 28 6 5.3781 -0.8148 2.0083 29 6 5.6211 0.6029 1.4794 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.5397 3.3740 0.8147 34 1 5.1266 2.8988 0.0038 35 1 2.4076 1.6571 2.3878 36 1 3.8605 1.8666 3.4001 37 1 2.7622 -0.7708 2.3193 38 1 2.7378 -0.2313 4.0154 39 1 5.9480 -3.5750 4.5915 40 1 6.3492 -2.8656 3.0091 41 1 6.6414 -1.9382 4.5001 42 1 4.1166 -4.8539 5.4103 43 1 2.3427 -4.7376 5.5009 44 1 3.2100 -4.0457 4.1091 45 1 2.8438 -3.7711 7.7491 46 1 3.4041 -2.0823 7.7996 47 1 -1.1079 -1.5593 9.0160 48 1 6.3350 -1.3086 2.1775 49 1 4.8009 -1.3814 1.2776 50 1 6.0999 0.5515 0.5015 51 1 6.2601 1.1480 2.1741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609617366.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:18 Heat of formation + Delta-G solvation = -76.418613 kcal Electronic energy + Delta-G solvation = -31404.375471 eV Core-core repulsion = 27305.410931 eV Total energy + Delta-G solvation = -4098.964540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01987 -39.83753 -38.70190 -36.83346 -36.06138 -34.81507 -32.72202 -32.00367 -31.07411 -28.85798 -28.30223 -27.90409 -25.99589 -24.89716 -24.20768 -22.90358 -22.32518 -21.01282 -20.70149 -18.96090 -18.33148 -17.64407 -16.93766 -16.83049 -16.78781 -16.40740 -15.98040 -15.18651 -14.99426 -14.61273 -14.47851 -14.23216 -13.93938 -13.67397 -13.56722 -13.22467 -13.04392 -12.92282 -12.66875 -12.53802 -12.37405 -12.25564 -12.08351 -11.97818 -11.92039 -11.76653 -11.55233 -11.41836 -11.27273 -11.17522 -10.90370 -10.86454 -10.79245 -10.51192 -10.36053 -10.17671 -10.11185 -9.91233 -9.53159 -8.87517 -8.58214 -8.06807 -7.66163 -6.08292 -4.06844 1.99892 2.51377 3.29706 3.33453 3.36112 3.37872 3.44339 3.67635 4.12084 4.34746 4.40315 4.40565 4.52276 4.70534 4.81835 4.93720 5.00606 5.10005 5.10807 5.16588 5.20217 5.26343 5.33090 5.38669 5.41873 5.43056 5.50783 5.56039 5.60324 5.69514 5.71104 5.75372 5.80492 5.85625 5.88883 5.94723 6.05985 6.10012 6.22597 6.24617 6.27718 6.35187 6.69542 6.94603 7.12486 7.23684 7.38116 7.62150 7.62593 8.29103 8.47910 8.93806 9.06286 9.52432 11.05104 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.003488 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.250059 B = 8024.748010 C = 9177.766124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.353 6.353 3 C 0.495 3.505 4 O -0.507 6.507 5 C -0.167 4.167 6 H 0.136 0.864 7 C -0.138 4.138 8 C -0.086 4.086 9 C -0.080 4.080 10 C 0.059 3.941 11 N -0.514 5.514 12 C 0.065 3.935 13 H 0.059 0.941 14 C -0.141 4.141 15 C 0.511 3.489 16 O -0.519 6.519 17 N -0.600 5.600 18 C 0.082 3.918 19 C 0.217 3.783 20 C -0.527 4.527 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.898 5.898 24 Si 0.876 3.124 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.266 1.266 28 C 0.053 3.947 29 C -0.076 4.076 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.034 0.966 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.029 0.971 46 H 0.036 0.964 47 H 0.264 0.736 48 H 0.083 0.917 49 H 0.034 0.966 50 H 0.070 0.930 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.060 -0.665 -18.956 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.338 3.662 4 O -0.395 6.395 5 C -0.186 4.186 6 H 0.153 0.847 7 C -0.175 4.175 8 C -0.086 4.086 9 C -0.118 4.118 10 C -0.069 4.069 11 N -0.240 5.240 12 C -0.047 4.047 13 H 0.077 0.923 14 C -0.198 4.198 15 C 0.297 3.703 16 O -0.394 6.394 17 N -0.333 5.333 18 C -0.062 4.062 19 C 0.096 3.904 20 C -0.566 4.566 21 H 0.091 0.909 22 C -0.130 4.130 23 N -0.537 5.537 24 Si 0.703 3.297 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.191 1.191 28 C -0.074 4.074 29 C -0.113 4.113 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.052 0.948 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.101 0.899 49 H 0.052 0.948 50 H 0.089 0.911 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.946 0.543 -18.193 21.771 hybrid contribution -0.710 -0.754 0.196 1.054 sum 11.235 -0.211 -17.997 21.217 Atomic orbital electron populations 1.23319 0.75989 1.03995 1.02637 1.86502 1.23565 1.33114 1.83757 1.22617 0.90498 0.81379 0.71716 1.90667 1.66902 1.36507 1.45411 1.21958 0.88070 1.06382 1.02214 0.84656 1.23174 1.01991 0.90882 1.01435 1.21734 0.97254 0.99775 0.89858 1.21256 0.98023 0.97446 0.95080 1.22097 0.89156 0.94254 1.01385 1.61420 1.17289 1.22510 1.22767 1.21641 0.98076 0.90555 0.94412 0.92345 1.21812 0.94761 1.01092 1.02165 1.20098 0.78856 0.84126 0.87269 1.90671 1.57633 1.26465 1.64588 1.47860 1.55647 1.11178 1.18661 1.21710 1.01786 0.86306 0.96416 1.19636 0.94866 0.96973 0.78913 1.21314 0.94945 1.45258 0.95047 0.90909 1.24852 0.94691 0.94462 0.98979 1.69898 1.08655 1.46180 1.28929 0.86850 0.79220 0.79315 0.84292 1.19888 1.21115 1.19080 1.22190 0.98866 0.96508 0.89886 1.21254 0.93672 0.95333 1.01073 0.92004 0.87881 0.91513 0.87410 0.87247 0.91843 0.89354 0.94778 0.89243 0.91651 0.91795 0.90948 0.93660 0.90642 0.92245 0.95342 0.94581 0.92594 0.89864 0.94796 0.91105 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.35 -4.48 10.57 -39.25 -0.41 -4.89 16 3 C 0.49 6.50 6.01 36.01 0.22 6.72 16 4 O -0.51 -7.91 16.20 -18.75 -0.30 -8.21 16 5 C -0.17 -1.73 5.99 -91.86 -0.55 -2.28 16 6 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 7 C -0.14 -1.31 9.51 -26.84 -0.26 -1.57 16 8 C -0.09 -0.93 2.02 -154.54 -0.31 -1.24 16 9 C -0.08 -1.14 5.52 -26.49 -0.15 -1.29 16 10 C 0.06 0.94 5.23 -3.74 -0.02 0.92 16 11 N -0.51 -7.50 4.13 -227.86 -0.94 -8.44 16 12 C 0.06 0.97 1.82 -68.87 -0.13 0.84 16 13 H 0.06 0.81 6.04 -51.93 -0.31 0.50 16 14 C -0.14 -1.64 8.40 37.16 0.31 -1.32 16 15 C 0.51 10.37 5.82 -10.98 -0.06 10.30 16 16 O -0.52 -12.81 15.37 5.56 0.09 -12.73 16 17 N -0.60 -12.29 2.86 -182.96 -0.52 -12.82 16 18 C 0.08 1.25 9.97 59.85 0.60 1.84 16 19 C 0.22 5.31 4.23 -5.20 -0.02 5.28 16 20 C -0.53 -15.13 9.94 -34.44 -0.34 -15.47 16 21 H 0.07 2.29 8.06 -52.48 -0.42 1.87 16 22 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 23 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 24 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 25 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 28 C 0.05 0.57 5.13 -3.74 -0.02 0.55 16 29 C -0.08 -0.70 5.87 -26.49 -0.16 -0.86 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.11 1.17 7.84 -51.93 -0.41 0.76 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.96 6.83 -51.93 -0.35 0.60 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 38 H 0.09 1.82 6.48 -51.93 -0.34 1.48 16 39 H 0.06 0.72 7.78 -51.93 -0.40 0.32 16 40 H 0.06 0.57 6.52 -51.93 -0.34 0.23 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 43 H 0.07 1.19 8.07 -51.92 -0.42 0.78 16 44 H 0.06 0.77 5.84 -51.93 -0.30 0.47 16 45 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 46 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 48 H 0.08 0.76 5.79 -51.93 -0.30 0.46 16 49 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 50 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 51 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 401.81 15.07 6.06 6.06 Total: -1.00 -35.85 401.81 -8.41 -44.26 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.56 Total: 0.87 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 0.08 Total: 5.88 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.69 Total: -48.21 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.63 Total: -25.83 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.85 -8.41 -44.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609617366.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.163 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds