Wall clock time and date at job start Tue Mar 31 2020 21:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00013 * 2 1 4 4 O 1.20828 * 120.00039 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99860 * 180.02562 * 3 2 1 6 6 H 1.08996 * 115.55690 * 55.48822 * 5 3 2 7 7 C 1.53059 * 117.52995 * 201.23878 * 5 3 2 8 8 C 1.52734 * 59.94299 * 107.45259 * 7 5 3 9 9 C 1.53227 * 117.83201 * 252.26280 * 8 7 5 10 10 C 1.53248 * 108.62640 * 163.02275 * 9 8 7 11 11 N 1.46813 * 109.45423 * 55.56759 * 10 9 8 12 12 C 1.46891 * 111.00414 * 170.80234 * 11 10 9 13 13 H 1.09004 * 109.47333 * 55.79059 * 12 11 10 14 14 C 1.53005 * 109.47542 * 175.79055 * 12 11 10 15 15 C 1.50699 * 109.47232 * 295.79449 * 12 11 10 16 16 O 1.21278 * 120.00077 * 334.85950 * 15 12 11 17 17 N 1.34784 * 120.00436 * 154.58441 * 15 12 11 18 18 C 1.46499 * 119.99266 * 0.02562 * 17 15 12 19 19 C 1.46492 * 120.00391 * 179.97438 * 17 15 12 20 20 C 1.50698 * 109.47057 * 89.99915 * 19 17 15 21 21 H 1.08004 * 120.00044 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00265 * 180.02562 * 20 19 17 23 23 N 1.31514 * 120.00052 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99789 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47086 * 90.00425 * 24 22 20 26 26 H 1.48505 * 109.47176 * 210.00183 * 24 22 20 27 27 H 1.48498 * 109.47420 * 330.00083 * 24 22 20 28 28 C 1.46814 * 111.58467 * 295.18704 * 11 10 9 29 29 C 1.53215 * 117.84538 * 107.73993 * 8 7 5 30 30 H 1.09001 * 109.47098 * 59.99643 * 1 2 3 31 31 H 1.08997 * 109.47566 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46930 * 299.99989 * 1 2 3 33 33 H 1.08998 * 117.50925 * 359.97438 * 7 5 3 34 34 H 1.09004 * 117.49913 * 214.92696 * 7 5 3 35 35 H 1.09007 * 109.60991 * 43.28306 * 9 8 7 36 36 H 1.08999 * 109.61221 * 282.76592 * 9 8 7 37 37 H 1.08998 * 109.47608 * 295.57668 * 10 9 8 38 38 H 1.09002 * 109.47533 * 175.56381 * 10 9 8 39 39 H 1.08995 * 109.47126 * 173.62814 * 14 12 11 40 40 H 1.08995 * 109.46784 * 293.63149 * 14 12 11 41 41 H 1.09003 * 109.46600 * 53.63090 * 14 12 11 42 42 H 1.09001 * 109.47390 * 90.00311 * 18 17 15 43 43 H 1.09007 * 109.46671 * 210.00163 * 18 17 15 44 44 H 1.08996 * 109.47485 * 329.99590 * 18 17 15 45 45 H 1.09000 * 109.47112 * 210.00035 * 19 17 15 46 46 H 1.08996 * 109.47170 * 330.00620 * 19 17 15 47 47 H 0.97004 * 120.00039 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.47572 * 184.80425 * 28 11 10 49 49 H 1.09001 * 109.47011 * 304.82018 * 28 11 10 50 50 H 1.08996 * 109.61128 * 316.71982 * 29 8 7 51 51 H 1.09000 * 109.60989 * 77.23100 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0648 0.7432 -0.8112 7 6 4.2069 2.5751 0.4911 8 6 4.2711 1.3166 1.3541 9 6 3.4004 1.2679 2.6140 10 6 3.2888 -0.1891 3.0759 11 7 4.6337 -0.7443 3.2717 12 6 4.5704 -2.0611 3.9197 13 1 3.9352 -2.7247 3.3329 14 6 5.9785 -2.6525 4.0117 15 6 3.9966 -1.9121 5.3052 16 8 4.0918 -0.8542 5.8905 17 7 3.3727 -2.9529 5.8918 18 6 3.2529 -4.2292 5.1826 19 6 2.8154 -2.8083 7.2389 20 6 1.3889 -2.3319 7.1438 21 1 0.9419 -2.1551 6.1767 22 6 0.6542 -2.1219 8.2915 23 7 -0.5909 -1.7067 8.2085 24 14 1.4270 -2.4285 9.9643 25 1 2.0731 -1.1816 10.4471 26 1 0.3755 -2.8457 10.9264 27 1 2.4467 -3.5019 9.8493 28 6 5.3781 -0.8148 2.0083 29 6 5.6211 0.6029 1.4794 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.5397 3.3740 0.8147 34 1 5.1266 2.8988 0.0038 35 1 2.4076 1.6571 2.3878 36 1 3.8605 1.8666 3.4001 37 1 2.7622 -0.7708 2.3193 38 1 2.7378 -0.2313 4.0154 39 1 5.9480 -3.5750 4.5915 40 1 6.3492 -2.8656 3.0091 41 1 6.6414 -1.9382 4.5001 42 1 4.1166 -4.8539 5.4103 43 1 2.3427 -4.7376 5.5009 44 1 3.2100 -4.0457 4.1091 45 1 2.8438 -3.7711 7.7491 46 1 3.4041 -2.0823 7.7996 47 1 -1.1079 -1.5593 9.0160 48 1 6.3350 -1.3086 2.1775 49 1 4.8009 -1.3814 1.2776 50 1 6.0999 0.5515 0.5015 51 1 6.2601 1.1480 2.1741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609617366.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:17 Heat of formation + Delta-G solvation = -101.453868 kcal Electronic energy + Delta-G solvation = -31405.461081 eV Core-core repulsion = 27305.410931 eV Total energy + Delta-G solvation = -4100.050150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.01774 -41.15683 -39.87404 -37.92772 -37.16829 -36.52251 -34.75852 -33.29177 -32.04005 -30.50280 -29.50221 -28.87045 -27.41841 -26.04708 -25.37199 -24.13325 -23.72400 -22.22540 -21.66426 -19.93454 -19.82205 -19.15580 -18.64333 -18.12409 -17.77060 -17.65208 -17.19866 -16.73050 -16.25491 -16.06618 -15.54049 -15.42231 -15.21274 -14.92882 -14.83918 -14.57545 -14.27088 -14.03150 -13.99630 -13.85370 -13.66602 -13.47720 -13.29793 -13.16496 -13.08531 -12.93865 -12.86142 -12.67864 -12.47889 -12.42227 -12.25833 -12.18715 -12.00816 -11.89914 -11.81011 -11.76708 -11.42026 -11.03722 -10.85325 -10.79241 -10.44506 -9.37243 -9.18302 -8.36248 -6.41278 0.98820 1.30391 1.35162 1.43401 1.62931 1.82136 2.26859 2.29333 2.60644 2.91710 2.98505 3.47158 3.53029 3.67916 3.68738 3.76371 3.96654 3.99316 4.10431 4.17691 4.18514 4.21405 4.33822 4.42992 4.44594 4.48981 4.58548 4.59610 4.63938 4.72344 4.76836 4.81816 4.85292 4.87019 4.88994 4.93370 4.96001 5.01202 5.02454 5.11297 5.18424 5.29154 5.31082 5.37762 5.44331 5.61867 5.96297 6.20780 6.24494 6.59490 6.61524 6.74606 7.20254 7.49569 8.80917 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.003488 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.250059 B = 8024.748010 C = 9177.766124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.487 3.513 4 O -0.542 6.542 5 C -0.163 4.163 6 H 0.173 0.827 7 C -0.127 4.127 8 C -0.091 4.091 9 C -0.077 4.077 10 C 0.072 3.928 11 N -0.530 5.530 12 C 0.074 3.926 13 H 0.074 0.926 14 C -0.133 4.133 15 C 0.500 3.500 16 O -0.577 6.577 17 N -0.610 5.610 18 C 0.076 3.924 19 C 0.226 3.774 20 C -0.534 4.534 21 H 0.023 0.977 22 C 0.010 3.990 23 N -0.947 5.947 24 Si 0.949 3.051 25 H -0.278 1.278 26 H -0.274 1.274 27 H -0.236 1.236 28 C 0.049 3.951 29 C -0.069 4.069 30 H 0.072 0.928 31 H 0.128 0.872 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.051 0.949 46 H 0.016 0.984 47 H 0.268 0.732 48 H 0.109 0.891 49 H 0.045 0.955 50 H 0.113 0.887 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.820 -2.872 -20.972 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.332 3.668 4 O -0.432 6.432 5 C -0.181 4.181 6 H 0.191 0.809 7 C -0.163 4.163 8 C -0.091 4.091 9 C -0.115 4.115 10 C -0.057 4.057 11 N -0.256 5.256 12 C -0.038 4.038 13 H 0.091 0.909 14 C -0.190 4.190 15 C 0.288 3.712 16 O -0.456 6.456 17 N -0.343 5.343 18 C -0.066 4.066 19 C 0.103 3.897 20 C -0.573 4.573 21 H 0.042 0.958 22 C -0.188 4.188 23 N -0.587 5.587 24 Si 0.772 3.228 25 H -0.204 1.204 26 H -0.199 1.199 27 H -0.158 1.158 28 C -0.077 4.077 29 C -0.106 4.106 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.166 0.834 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.069 0.931 46 H 0.034 0.966 47 H 0.077 0.923 48 H 0.127 0.873 49 H 0.064 0.936 50 H 0.132 0.868 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.726 -1.728 -20.256 25.702 hybrid contribution -2.015 -0.024 0.770 2.157 sum 13.712 -1.752 -19.485 23.891 Atomic orbital electron populations 1.23498 0.75274 1.05538 1.02202 1.86496 1.24475 1.33088 1.83470 1.23355 0.91905 0.80944 0.70598 1.90649 1.67957 1.37530 1.47072 1.22196 0.85986 1.07334 1.02592 0.80935 1.23287 1.02845 0.89797 1.00384 1.21625 0.97653 1.01788 0.88082 1.21098 0.97701 0.95800 0.96872 1.21796 0.90020 0.95697 0.98152 1.61390 1.16125 1.22570 1.25497 1.21652 1.00211 0.91300 0.90617 0.90863 1.21839 0.91745 1.00743 1.04697 1.21232 0.77881 0.82957 0.89101 1.90628 1.59908 1.28642 1.66446 1.47994 1.55126 1.13417 1.17735 1.22014 1.03040 0.84235 0.97300 1.19289 0.91772 0.96969 0.81671 1.21544 0.97251 1.45335 0.93154 0.95821 1.25871 0.95086 0.94021 1.03777 1.70058 1.10513 1.47710 1.30419 0.85699 0.79043 0.79805 0.78296 1.20375 1.19896 1.15849 1.22424 0.99292 0.98060 0.87913 1.21323 0.92222 0.93884 1.03170 0.90938 0.85394 0.93490 0.89593 0.83414 0.94097 0.91344 0.94674 0.95247 0.90673 0.87769 0.92141 0.89716 0.91715 0.89846 0.93108 0.96587 0.92308 0.87291 0.93642 0.86838 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -9.08 10.57 -51.40 -0.54 -9.62 16 3 C 0.49 12.77 6.01 71.24 0.43 13.20 16 4 O -0.54 -17.55 16.20 21.96 0.36 -17.19 16 5 C -0.16 -2.97 5.99 -11.60 -0.07 -3.04 16 6 H 0.17 1.88 8.14 -2.39 -0.02 1.86 16 7 C -0.13 -2.13 9.51 30.53 0.29 -1.84 16 8 C -0.09 -1.82 2.02 -52.20 -0.11 -1.93 16 9 C -0.08 -2.33 5.52 30.75 0.17 -2.16 16 10 C 0.07 2.43 5.23 86.40 0.45 2.88 16 11 N -0.53 -15.05 4.13 -874.83 -3.61 -18.67 16 12 C 0.07 2.09 1.82 44.17 0.08 2.17 16 13 H 0.07 1.86 6.04 -2.39 -0.01 1.85 16 14 C -0.13 -2.59 8.40 71.98 0.60 -1.99 16 15 C 0.50 20.78 5.82 87.66 0.51 21.29 16 16 O -0.58 -30.24 15.37 -3.02 -0.05 -30.29 16 17 N -0.61 -25.19 2.86 -851.15 -2.43 -27.62 16 18 C 0.08 2.18 9.97 127.77 1.27 3.45 16 19 C 0.23 11.23 4.23 85.63 0.36 11.59 16 20 C -0.53 -32.25 9.94 25.60 0.25 -31.99 16 21 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 22 C 0.01 0.62 5.47 84.65 0.46 1.08 16 23 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 24 Si 0.95 45.37 27.47 68.60 1.88 47.25 16 25 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 28 C 0.05 0.86 5.13 86.40 0.44 1.30 16 29 C -0.07 -1.00 5.87 30.75 0.18 -0.81 16 30 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 31 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 33 H 0.09 1.86 7.84 -2.39 -0.02 1.84 16 34 H 0.15 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.04 1.37 6.83 -2.38 -0.02 1.36 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 38 H 0.03 1.32 6.48 -2.39 -0.02 1.31 16 39 H 0.07 1.34 7.78 -2.39 -0.02 1.32 16 40 H 0.10 1.23 6.52 -2.39 -0.02 1.21 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.79 8.06 -2.39 -0.02 1.77 16 43 H 0.06 1.99 8.07 -2.38 -0.02 1.97 16 44 H 0.08 1.96 5.84 -2.39 -0.01 1.95 16 45 H 0.05 2.30 7.13 -2.39 -0.02 2.28 16 46 H 0.02 0.86 6.85 -2.39 -0.02 0.85 16 47 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 48 H 0.11 1.38 5.79 -2.39 -0.01 1.36 16 49 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16 50 H 0.11 0.78 8.08 -2.39 -0.02 0.76 16 51 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -87.97 401.81 3.30 -84.68 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.86 Total: 17.32 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 6.53 Total: 15.01 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -5.75 Total: -107.16 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -0.23 Total: -57.10 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.25 kcal Total: -87.97 3.30 -84.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609617366.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.775 kcal (2) G-P(sol) polarization free energy of solvation -87.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds