Wall clock time and date at job start Tue Mar 31 2020 21:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00231 * 2 1 4 4 O 1.20830 * 120.00024 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00178 * 180.02562 * 3 2 1 6 6 H 1.08993 * 115.57029 * 34.27130 * 5 3 2 7 7 C 1.53055 * 117.50004 * 248.55290 * 5 3 2 8 8 C 1.52736 * 117.50418 * 179.97438 * 5 3 2 9 9 C 1.53212 * 117.84458 * 359.72071 * 8 5 3 10 10 C 1.53254 * 108.62373 * 162.99622 * 9 8 5 11 11 N 1.46807 * 109.44785 * 55.59837 * 10 9 8 12 12 C 1.46900 * 111.00481 * 170.80835 * 11 10 9 13 13 H 1.09003 * 109.46988 * 320.47307 * 12 11 10 14 14 C 1.52997 * 109.47073 * 80.46962 * 12 11 10 15 15 C 1.50694 * 109.47106 * 200.47508 * 12 11 10 16 16 O 1.21280 * 120.00431 * 324.27579 * 15 12 11 17 17 N 1.34782 * 119.99940 * 144.28410 * 15 12 11 18 18 C 1.46502 * 119.99992 * 6.55480 * 17 15 12 19 19 C 1.46501 * 119.99971 * 186.55983 * 17 15 12 20 20 C 1.50707 * 109.46860 * 269.99925 * 19 17 15 21 21 H 1.07995 * 120.00061 * 359.97438 * 20 19 17 22 22 C 1.37871 * 119.99651 * 180.02562 * 20 19 17 23 23 N 1.31515 * 120.00342 * 359.71951 * 22 20 19 24 24 Si 1.86808 * 119.99661 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47206 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46990 * 119.99851 * 24 22 20 27 27 H 1.48500 * 109.46862 * 239.99333 * 24 22 20 28 28 C 1.46809 * 111.56879 * 295.17953 * 11 10 9 29 29 C 1.53207 * 117.84403 * 215.21958 * 8 5 3 30 30 H 1.09000 * 109.47223 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47215 * 300.00499 * 1 2 3 32 32 H 1.08994 * 109.47086 * 60.00429 * 1 2 3 33 33 H 1.08994 * 117.50517 * 145.05385 * 7 5 3 34 34 H 1.09008 * 117.53373 * 359.97438 * 7 5 3 35 35 H 1.08999 * 109.61601 * 43.25420 * 9 8 5 36 36 H 1.09005 * 109.61385 * 282.73629 * 9 8 5 37 37 H 1.09004 * 109.47561 * 295.60588 * 10 9 8 38 38 H 1.08996 * 109.48104 * 175.59625 * 10 9 8 39 39 H 1.09002 * 109.46676 * 67.48915 * 14 12 11 40 40 H 1.08999 * 109.46987 * 187.48508 * 14 12 11 41 41 H 1.09001 * 109.47315 * 307.48609 * 14 12 11 42 42 H 1.08997 * 109.46851 * 274.69220 * 18 17 15 43 43 H 1.08999 * 109.46646 * 34.69251 * 18 17 15 44 44 H 1.08997 * 109.46762 * 154.69136 * 18 17 15 45 45 H 1.08991 * 109.47146 * 149.99665 * 19 17 15 46 46 H 1.09005 * 109.47252 * 29.99016 * 19 17 15 47 47 H 0.96999 * 119.99921 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.47739 * 184.82075 * 28 11 10 49 49 H 1.09006 * 109.47467 * 304.82992 * 28 11 10 50 50 H 1.09005 * 109.61465 * 316.74073 * 29 8 5 51 51 H 1.08997 * 109.61939 * 77.26578 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0784 0.4882 -0.5546 7 6 4.2466 1.8073 1.2629 8 6 4.1999 2.6646 -0.0012 9 6 3.2640 3.8776 -0.0077 10 6 4.0629 5.1145 0.4174 11 7 5.2281 5.2697 -0.4620 12 6 5.8959 6.5572 -0.2288 13 1 5.1459 7.3317 -0.0678 14 6 6.7920 6.4505 1.0068 15 6 6.7352 6.9124 -1.4289 16 8 7.3080 6.0408 -2.0478 17 7 6.8493 8.1988 -1.8145 18 6 6.2783 9.2648 -0.9876 19 6 7.5444 8.5311 -3.0606 20 6 9.0082 8.7495 -2.7765 21 1 9.3831 8.6511 -1.7685 22 6 9.8684 9.0760 -3.8032 23 7 9.4127 9.1914 -5.0315 24 14 11.6828 9.3474 -3.4509 25 1 11.9398 9.1546 -2.0011 26 1 12.4894 8.3746 -4.2307 27 1 12.0614 10.7294 -3.8408 28 6 6.1700 4.1537 -0.3119 29 6 5.5034 2.8565 -0.7830 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 5.2062 1.3709 1.5399 34 1 3.6060 2.1010 2.0945 35 1 2.4455 3.7122 0.6929 36 1 2.8653 4.0268 -1.0112 37 1 4.3985 4.9939 1.4475 38 1 3.4306 5.9991 0.3425 39 1 7.6203 5.7737 0.7974 40 1 7.1830 7.4364 1.2582 41 1 6.2110 6.0655 1.8448 42 1 5.2262 9.3965 -1.2402 43 1 6.3684 8.9959 0.0648 44 1 6.8155 10.1951 -1.1722 45 1 7.1168 9.4399 -3.4839 46 1 7.4304 7.7113 -3.7700 47 1 10.0180 9.4207 -5.7539 48 1 7.0588 4.3448 -0.9134 49 1 6.4544 4.0565 0.7359 50 1 6.1695 2.0141 -0.5962 51 1 5.2845 2.9238 -1.8486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609617367.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:21 Heat of formation + Delta-G solvation = -79.128810 kcal Electronic energy + Delta-G solvation = -30559.346741 eV Core-core repulsion = 26460.264679 eV Total energy + Delta-G solvation = -4099.082063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.14631 -39.88678 -38.69576 -36.92170 -36.07552 -34.68460 -32.70004 -31.86700 -30.91577 -28.78255 -27.98825 -27.58550 -25.89073 -24.61525 -24.38277 -23.34692 -22.74628 -21.33506 -20.53390 -18.67189 -18.20751 -17.91332 -16.82942 -16.60316 -16.46270 -16.28553 -15.94412 -15.20435 -14.80676 -14.77128 -14.39628 -14.34027 -13.92806 -13.82458 -13.46686 -13.27538 -13.17998 -13.09902 -12.56049 -12.37961 -12.32561 -12.22176 -12.07707 -11.93924 -11.83604 -11.70575 -11.48866 -11.40479 -11.14865 -11.10536 -10.86881 -10.81130 -10.69125 -10.54434 -10.27129 -10.15704 -10.05488 -9.97614 -9.56418 -8.75332 -8.40296 -7.96114 -7.55661 -6.00328 -4.04618 1.82839 2.35856 3.31433 3.37097 3.39223 3.42605 3.45911 3.83057 4.28420 4.33165 4.39686 4.47189 4.50609 4.73840 4.76387 4.83941 4.85343 5.03917 5.13210 5.17228 5.25597 5.29915 5.34221 5.34598 5.38910 5.45922 5.53835 5.58330 5.62015 5.66566 5.75673 5.79126 5.83718 5.96584 5.97254 6.02350 6.14976 6.16205 6.26379 6.30654 6.34713 6.42447 7.06574 7.22714 7.32766 7.50620 7.51089 7.62197 7.96591 8.28388 8.50895 8.95959 9.19707 9.60306 11.07648 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.002290 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.606841 B =12224.405072 C =12403.256185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.492 3.508 4 O -0.499 6.499 5 C -0.169 4.169 6 H 0.135 0.865 7 C -0.143 4.143 8 C -0.076 4.076 9 C -0.076 4.076 10 C 0.057 3.943 11 N -0.519 5.519 12 C 0.064 3.936 13 H 0.093 0.907 14 C -0.174 4.174 15 C 0.519 3.481 16 O -0.529 6.529 17 N -0.604 5.604 18 C 0.084 3.916 19 C 0.247 3.753 20 C -0.521 4.521 21 H 0.057 0.943 22 C 0.059 3.941 23 N -0.895 5.895 24 Si 0.897 3.103 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.284 1.284 28 C 0.053 3.947 29 C -0.079 4.079 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.031 0.969 46 H 0.042 0.958 47 H 0.262 0.738 48 H 0.109 0.891 49 H 0.031 0.969 50 H 0.069 0.931 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.836 -14.529 15.328 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.335 3.665 4 O -0.386 6.386 5 C -0.188 4.188 6 H 0.152 0.848 7 C -0.180 4.180 8 C -0.076 4.076 9 C -0.113 4.113 10 C -0.071 4.071 11 N -0.243 5.243 12 C -0.048 4.048 13 H 0.111 0.889 14 C -0.233 4.233 15 C 0.304 3.696 16 O -0.405 6.405 17 N -0.337 5.337 18 C -0.060 4.060 19 C 0.128 3.872 20 C -0.560 4.560 21 H 0.075 0.925 22 C -0.143 4.143 23 N -0.535 5.535 24 Si 0.725 3.275 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.210 1.210 28 C -0.075 4.075 29 C -0.116 4.116 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.049 0.951 46 H 0.060 0.940 47 H 0.072 0.928 48 H 0.127 0.873 49 H 0.049 0.951 50 H 0.088 0.912 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.877 -14.646 14.305 25.908 hybrid contribution 0.982 0.222 0.935 1.374 sum -14.895 -14.424 15.240 25.732 Atomic orbital electron populations 1.23266 0.76288 1.03650 1.02612 1.86498 1.23378 1.33575 1.84095 1.22754 0.90539 0.81169 0.71996 1.90654 1.67003 1.35759 1.45206 1.21877 0.87988 1.02090 1.06848 0.84757 1.23190 1.01816 1.02175 0.90841 1.21786 0.97737 0.89516 0.98576 1.21443 0.95653 0.90541 1.03690 1.22200 0.92290 0.98647 0.93966 1.61592 1.08141 1.00911 1.53706 1.21716 0.96450 0.92889 0.93786 0.88855 1.22302 1.00613 1.03257 0.97098 1.20043 0.81459 0.82904 0.85155 1.90576 1.46737 1.47436 1.55747 1.48123 1.55601 1.04749 1.25226 1.21628 0.97642 0.92527 0.94215 1.19267 0.91176 0.96680 0.80063 1.21469 0.93119 1.46922 0.94500 0.92497 1.24944 0.98896 0.95491 0.94921 1.69946 1.35324 1.48607 0.99586 0.86461 0.85122 0.77590 0.78336 1.19876 1.20911 1.21047 1.22340 0.96541 0.89092 0.99491 1.21290 0.92537 0.97427 1.00372 0.88139 0.91935 0.91780 0.87195 0.88229 0.89450 0.90444 0.95020 0.90788 0.91344 0.91587 0.92176 0.93867 0.92815 0.90623 0.95101 0.93992 0.92838 0.87319 0.95104 0.91222 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.44 10.56 -39.25 -0.41 -3.86 16 3 C 0.49 5.29 7.72 36.01 0.28 5.57 16 4 O -0.50 -6.36 12.89 -18.75 -0.24 -6.60 16 5 C -0.17 -1.59 6.03 -91.88 -0.55 -2.14 16 6 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 7 C -0.14 -1.20 9.63 -26.80 -0.26 -1.46 16 8 C -0.08 -0.80 2.02 -154.53 -0.31 -1.11 16 9 C -0.08 -0.90 4.32 -26.49 -0.11 -1.01 16 10 C 0.06 0.68 5.26 -3.74 -0.02 0.66 16 11 N -0.52 -7.63 4.39 -227.86 -1.00 -8.63 16 12 C 0.06 0.98 1.89 -68.87 -0.13 0.85 16 13 H 0.09 1.27 6.30 -51.93 -0.33 0.94 16 14 C -0.17 -2.31 7.94 37.16 0.30 -2.02 16 15 C 0.52 10.84 6.76 -10.99 -0.07 10.77 16 16 O -0.53 -13.13 14.03 5.56 0.08 -13.06 16 17 N -0.60 -12.99 2.86 -182.95 -0.52 -13.51 16 18 C 0.08 1.35 9.56 59.85 0.57 1.92 16 19 C 0.25 6.56 5.09 -5.19 -0.03 6.53 16 20 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 21 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 24 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 C 0.05 0.74 4.05 -3.74 -0.02 0.73 16 29 C -0.08 -0.93 5.87 -26.49 -0.16 -1.09 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 8.13 -51.92 -0.42 -0.02 16 32 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 33 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.09 1.03 6.01 -51.93 -0.31 0.72 16 36 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 37 H 0.03 0.35 7.28 -51.93 -0.38 -0.03 16 38 H 0.07 0.84 7.84 -51.93 -0.41 0.43 16 39 H 0.07 1.01 6.99 -51.93 -0.36 0.64 16 40 H 0.07 0.85 7.24 -51.93 -0.38 0.47 16 41 H 0.06 0.67 7.15 -51.93 -0.37 0.29 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.71 6.08 -51.93 -0.32 0.40 16 44 H 0.07 1.24 8.04 -51.93 -0.42 0.83 16 45 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 46 H 0.04 1.26 7.52 -51.93 -0.39 0.87 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.11 1.91 5.70 -51.93 -0.30 1.61 16 49 H 0.03 0.39 6.95 -51.93 -0.36 0.03 16 50 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 51 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -34.32 399.05 -8.74 -43.07 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.50 Total: -0.19 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 0.13 Total: 5.89 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.79 Total: -48.28 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.58 Total: -23.51 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.32 -8.74 -43.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609617367.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.062 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds