Wall clock time and date at job start Tue Mar 31 2020 21:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00231 * 2 1 4 4 O 1.20830 * 120.00024 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00178 * 180.02562 * 3 2 1 6 6 H 1.08993 * 115.57029 * 34.27130 * 5 3 2 7 7 C 1.53055 * 117.50004 * 248.55290 * 5 3 2 8 8 C 1.52736 * 117.50418 * 179.97438 * 5 3 2 9 9 C 1.53212 * 117.84458 * 359.72071 * 8 5 3 10 10 C 1.53254 * 108.62373 * 162.99622 * 9 8 5 11 11 N 1.46807 * 109.44785 * 55.59837 * 10 9 8 12 12 C 1.46900 * 111.00481 * 170.80835 * 11 10 9 13 13 H 1.09003 * 109.46988 * 320.47307 * 12 11 10 14 14 C 1.52997 * 109.47073 * 80.46962 * 12 11 10 15 15 C 1.50694 * 109.47106 * 200.47508 * 12 11 10 16 16 O 1.21280 * 120.00431 * 324.27579 * 15 12 11 17 17 N 1.34782 * 119.99940 * 144.28410 * 15 12 11 18 18 C 1.46502 * 119.99992 * 6.55480 * 17 15 12 19 19 C 1.46501 * 119.99971 * 186.55983 * 17 15 12 20 20 C 1.50707 * 109.46860 * 269.99925 * 19 17 15 21 21 H 1.07995 * 120.00061 * 359.97438 * 20 19 17 22 22 C 1.37871 * 119.99651 * 180.02562 * 20 19 17 23 23 N 1.31515 * 120.00342 * 359.71951 * 22 20 19 24 24 Si 1.86808 * 119.99661 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47206 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46990 * 119.99851 * 24 22 20 27 27 H 1.48500 * 109.46862 * 239.99333 * 24 22 20 28 28 C 1.46809 * 111.56879 * 295.17953 * 11 10 9 29 29 C 1.53207 * 117.84403 * 215.21958 * 8 5 3 30 30 H 1.09000 * 109.47223 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47215 * 300.00499 * 1 2 3 32 32 H 1.08994 * 109.47086 * 60.00429 * 1 2 3 33 33 H 1.08994 * 117.50517 * 145.05385 * 7 5 3 34 34 H 1.09008 * 117.53373 * 359.97438 * 7 5 3 35 35 H 1.08999 * 109.61601 * 43.25420 * 9 8 5 36 36 H 1.09005 * 109.61385 * 282.73629 * 9 8 5 37 37 H 1.09004 * 109.47561 * 295.60588 * 10 9 8 38 38 H 1.08996 * 109.48104 * 175.59625 * 10 9 8 39 39 H 1.09002 * 109.46676 * 67.48915 * 14 12 11 40 40 H 1.08999 * 109.46987 * 187.48508 * 14 12 11 41 41 H 1.09001 * 109.47315 * 307.48609 * 14 12 11 42 42 H 1.08997 * 109.46851 * 274.69220 * 18 17 15 43 43 H 1.08999 * 109.46646 * 34.69251 * 18 17 15 44 44 H 1.08997 * 109.46762 * 154.69136 * 18 17 15 45 45 H 1.08991 * 109.47146 * 149.99665 * 19 17 15 46 46 H 1.09005 * 109.47252 * 29.99016 * 19 17 15 47 47 H 0.96999 * 119.99921 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.47739 * 184.82075 * 28 11 10 49 49 H 1.09006 * 109.47467 * 304.82992 * 28 11 10 50 50 H 1.09005 * 109.61465 * 316.74073 * 29 8 5 51 51 H 1.08997 * 109.61939 * 77.26578 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0784 0.4882 -0.5546 7 6 4.2466 1.8073 1.2629 8 6 4.1999 2.6646 -0.0012 9 6 3.2640 3.8776 -0.0077 10 6 4.0629 5.1145 0.4174 11 7 5.2281 5.2697 -0.4620 12 6 5.8959 6.5572 -0.2288 13 1 5.1459 7.3317 -0.0678 14 6 6.7920 6.4505 1.0068 15 6 6.7352 6.9124 -1.4289 16 8 7.3080 6.0408 -2.0478 17 7 6.8493 8.1988 -1.8145 18 6 6.2783 9.2648 -0.9876 19 6 7.5444 8.5311 -3.0606 20 6 9.0082 8.7495 -2.7765 21 1 9.3831 8.6511 -1.7685 22 6 9.8684 9.0760 -3.8032 23 7 9.4127 9.1914 -5.0315 24 14 11.6828 9.3474 -3.4509 25 1 11.9398 9.1546 -2.0011 26 1 12.4894 8.3746 -4.2307 27 1 12.0614 10.7294 -3.8408 28 6 6.1700 4.1537 -0.3119 29 6 5.5034 2.8565 -0.7830 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 5.2062 1.3709 1.5399 34 1 3.6060 2.1010 2.0945 35 1 2.4455 3.7122 0.6929 36 1 2.8653 4.0268 -1.0112 37 1 4.3985 4.9939 1.4475 38 1 3.4306 5.9991 0.3425 39 1 7.6203 5.7737 0.7974 40 1 7.1830 7.4364 1.2582 41 1 6.2110 6.0655 1.8448 42 1 5.2262 9.3965 -1.2402 43 1 6.3684 8.9959 0.0648 44 1 6.8155 10.1951 -1.1722 45 1 7.1168 9.4399 -3.4839 46 1 7.4304 7.7113 -3.7700 47 1 10.0180 9.4207 -5.7539 48 1 7.0588 4.3448 -0.9134 49 1 6.4544 4.0565 0.7359 50 1 6.1695 2.0141 -0.5962 51 1 5.2845 2.9238 -1.8486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609617367.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:20 Heat of formation + Delta-G solvation = -101.555826 kcal Electronic energy + Delta-G solvation = -30560.319250 eV Core-core repulsion = 26460.264679 eV Total energy + Delta-G solvation = -4100.054571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.97302 -41.14244 -39.83461 -37.93574 -37.01450 -36.44556 -34.74363 -33.05363 -31.90054 -30.00609 -29.33288 -28.59208 -27.38361 -25.99611 -25.27236 -24.43501 -24.18692 -22.52346 -21.36378 -19.93112 -19.38665 -18.71158 -18.65374 -17.96310 -17.47351 -17.32115 -17.24893 -16.63467 -16.21369 -15.90641 -15.79209 -15.55678 -15.15833 -14.73183 -14.54476 -14.45252 -14.23991 -14.01237 -13.98021 -13.66808 -13.51018 -13.44037 -13.19526 -13.16309 -13.00459 -12.90385 -12.84837 -12.68371 -12.59005 -12.45864 -12.39727 -12.18510 -11.90040 -11.77298 -11.66586 -11.60664 -11.10917 -11.05745 -10.83001 -10.64218 -10.23736 -9.36021 -9.09585 -8.20631 -6.35494 1.03713 1.35960 1.38504 1.50397 1.68327 1.87074 2.27880 2.44780 2.68214 3.08138 3.12879 3.50267 3.63705 3.71611 3.76642 3.91345 4.03468 4.06043 4.14078 4.29257 4.32082 4.33561 4.40346 4.41670 4.54749 4.56060 4.60830 4.68229 4.69933 4.73332 4.78059 4.80585 4.88437 4.94338 4.97197 5.03058 5.05213 5.11695 5.17083 5.22195 5.24536 5.27997 5.36988 5.50931 5.59723 5.88323 6.07765 6.10512 6.29335 6.72775 6.73647 6.86615 7.30824 7.57658 8.86314 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.002290 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.606841 B =12224.405072 C =12403.256185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.364 6.364 3 C 0.490 3.510 4 O -0.525 6.525 5 C -0.170 4.170 6 H 0.149 0.851 7 C -0.117 4.117 8 C -0.093 4.093 9 C -0.068 4.068 10 C 0.061 3.939 11 N -0.542 5.542 12 C 0.077 3.923 13 H 0.118 0.882 14 C -0.166 4.166 15 C 0.507 3.493 16 O -0.581 6.581 17 N -0.614 5.614 18 C 0.079 3.921 19 C 0.263 3.737 20 C -0.535 4.535 21 H 0.053 0.947 22 C 0.004 3.996 23 N -0.930 5.930 24 Si 0.969 3.031 25 H -0.266 1.266 26 H -0.282 1.282 27 H -0.269 1.269 28 C 0.057 3.943 29 C -0.072 4.072 30 H 0.130 0.870 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.021 0.979 46 H -0.007 1.007 47 H 0.266 0.734 48 H 0.066 0.934 49 H 0.051 0.949 50 H 0.091 0.909 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.143 -15.128 18.648 28.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.335 3.665 4 O -0.415 6.415 5 C -0.189 4.189 6 H 0.167 0.833 7 C -0.154 4.154 8 C -0.093 4.093 9 C -0.106 4.106 10 C -0.066 4.066 11 N -0.267 5.267 12 C -0.035 4.035 13 H 0.136 0.864 14 C -0.225 4.225 15 C 0.295 3.705 16 O -0.460 6.460 17 N -0.347 5.347 18 C -0.063 4.063 19 C 0.141 3.859 20 C -0.574 4.574 21 H 0.071 0.929 22 C -0.195 4.195 23 N -0.570 5.570 24 Si 0.793 3.207 25 H -0.190 1.190 26 H -0.208 1.208 27 H -0.194 1.194 28 C -0.070 4.070 29 C -0.110 4.110 30 H 0.148 0.852 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.150 0.850 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.039 0.961 46 H 0.011 0.989 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.069 0.931 50 H 0.109 0.891 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.223 -15.238 17.665 28.416 hybrid contribution 0.973 0.355 -0.161 1.048 sum -15.250 -14.883 17.504 27.576 Atomic orbital electron populations 1.23533 0.74787 1.05629 1.02478 1.86489 1.24916 1.32907 1.83680 1.23019 0.91084 0.81123 0.71297 1.90641 1.67671 1.36598 1.46562 1.21966 0.87421 1.01470 1.08049 0.83346 1.23311 1.02581 0.99641 0.89868 1.21599 0.96961 0.89869 1.00901 1.21308 0.95913 0.91378 1.01994 1.22237 0.91037 0.98998 0.94317 1.61494 1.09020 1.00722 1.55499 1.21611 0.96408 0.94017 0.91437 0.86394 1.22263 0.99985 1.03491 0.96777 1.21207 0.81183 0.81905 0.86230 1.90556 1.48841 1.48829 1.57801 1.48181 1.55459 1.06704 1.24309 1.21914 0.98584 0.90607 0.95239 1.18707 0.91277 0.94096 0.81815 1.21709 0.94277 1.47028 0.94400 0.92907 1.25893 1.03924 0.95010 0.94636 1.70069 1.37181 1.49203 1.00578 0.85352 0.78876 0.78033 0.78433 1.19048 1.20816 1.19438 1.22187 0.95220 0.89820 0.99759 1.21185 0.93756 0.97215 0.98834 0.85161 0.91709 0.92321 0.85000 0.87410 0.89130 0.93406 0.92875 0.90039 0.93294 0.90820 0.88884 0.91273 0.89306 0.91293 0.96081 0.98918 0.92480 0.91525 0.93080 0.89106 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.43 10.56 -51.40 -0.54 -6.98 16 3 C 0.49 9.95 7.72 71.24 0.55 10.50 16 4 O -0.53 -13.07 12.89 21.95 0.28 -12.79 16 5 C -0.17 -2.88 6.03 -11.61 -0.07 -2.95 16 6 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 7 C -0.12 -1.57 9.63 30.55 0.29 -1.28 16 8 C -0.09 -1.83 2.02 -52.19 -0.11 -1.94 16 9 C -0.07 -1.55 4.32 30.75 0.13 -1.42 16 10 C 0.06 1.32 5.26 86.41 0.45 1.78 16 11 N -0.54 -15.58 4.39 -874.81 -3.84 -19.42 16 12 C 0.08 2.26 1.89 44.17 0.08 2.35 16 13 H 0.12 2.86 6.30 -2.39 -0.02 2.84 16 14 C -0.17 -4.00 7.94 71.98 0.57 -3.43 16 15 C 0.51 21.70 6.76 87.65 0.59 22.30 16 16 O -0.58 -30.64 14.03 -3.03 -0.04 -30.68 16 17 N -0.61 -26.96 2.86 -851.13 -2.43 -29.39 16 18 C 0.08 2.41 9.56 127.77 1.22 3.64 16 19 C 0.26 14.64 5.09 85.63 0.44 15.08 16 20 C -0.54 -31.52 9.39 25.60 0.24 -31.28 16 21 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 22 C 0.00 0.23 5.46 84.65 0.46 0.69 16 23 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 24 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 C 0.06 1.61 4.05 86.41 0.35 1.96 16 29 C -0.07 -1.70 5.87 30.75 0.18 -1.52 16 30 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.75 8.13 -2.38 -0.02 0.73 16 32 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.09 2.02 6.01 -2.39 -0.01 2.00 16 36 H 0.05 1.35 8.12 -2.38 -0.02 1.33 16 37 H 0.05 0.95 7.28 -2.38 -0.02 0.93 16 38 H 0.08 1.63 7.84 -2.39 -0.02 1.62 16 39 H 0.05 1.38 6.99 -2.39 -0.02 1.37 16 40 H 0.07 1.66 7.24 -2.39 -0.02 1.64 16 41 H 0.09 1.65 7.15 -2.39 -0.02 1.63 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.09 2.09 6.08 -2.39 -0.01 2.08 16 44 H 0.07 2.21 8.04 -2.39 -0.02 2.19 16 45 H 0.02 1.19 8.07 -2.39 -0.02 1.18 16 46 H -0.01 -0.47 7.52 -2.38 -0.02 -0.49 16 47 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 48 H 0.07 2.46 5.70 -2.39 -0.01 2.45 16 49 H 0.05 1.19 6.95 -2.38 -0.02 1.18 16 50 H 0.09 1.69 8.08 -2.38 -0.02 1.67 16 51 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -79.95 399.05 3.25 -76.70 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.92 Total: 16.04 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 6.59 Total: 16.01 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -5.99 Total: -106.01 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.30 Total: -50.45 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -79.95 3.25 -76.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609617367.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.856 kcal (2) G-P(sol) polarization free energy of solvation -79.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds