Wall clock time and date at job start Tue Mar 31 2020 22:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47266 * 2 1 4 4 C 1.47847 * 110.99978 * 54.97410 * 3 2 1 5 5 C 1.54912 * 104.79147 * 146.36682 * 4 3 2 6 6 C 1.55138 * 101.65316 * 322.93003 * 5 4 3 7 7 C 1.47439 * 110.99906 * 175.82246 * 3 2 1 8 8 H 1.09004 * 109.89118 * 117.17418 * 7 3 2 9 9 C 1.52993 * 109.89055 * 356.14415 * 7 3 2 10 10 N 1.46502 * 109.47081 * 175.60628 * 9 7 3 11 11 C 1.46759 * 124.35151 * 85.81365 * 10 9 7 12 12 C 1.54478 * 105.47671 * 162.96384 * 11 10 9 13 13 H 1.09001 * 110.97127 * 143.57019 * 12 11 10 14 14 C 1.50704 * 110.96436 * 267.29359 * 12 11 10 15 15 O 1.20825 * 120.00439 * 356.90907 * 14 12 11 16 16 O 1.34234 * 119.99971 * 176.91012 * 14 12 11 17 17 C 1.45193 * 117.00186 * 179.97438 * 16 14 12 18 18 C 1.52995 * 109.47111 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47328 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99545 * 359.72892 * 19 18 17 21 21 C 1.37872 * 120.00216 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00068 * 359.72373 * 21 19 18 23 23 Si 1.86804 * 119.99952 * 179.72696 * 21 19 18 24 24 H 1.48495 * 109.47084 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47481 * 119.99895 * 23 21 19 26 26 H 1.48504 * 109.46843 * 239.99591 * 23 21 19 27 27 C 1.54628 * 101.79961 * 25.42861 * 12 11 10 28 28 C 1.34420 * 124.34870 * 265.78134 * 10 9 7 29 29 O 1.21280 * 124.93953 * 0.46197 * 28 10 9 30 30 H 1.09010 * 109.46597 * 60.00384 * 1 2 3 31 31 H 1.08997 * 109.47534 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47575 * 300.00671 * 1 2 3 33 33 H 1.08998 * 109.47211 * 239.99525 * 2 1 3 34 34 H 1.09004 * 109.46928 * 119.99334 * 2 1 3 35 35 H 1.09002 * 110.37402 * 265.19353 * 4 3 2 36 36 H 1.08994 * 110.37186 * 27.53744 * 4 3 2 37 37 H 1.08998 * 110.98845 * 81.02388 * 5 4 3 38 38 H 1.09002 * 110.98787 * 204.84089 * 5 4 3 39 39 H 1.09004 * 110.70748 * 277.27237 * 6 5 4 40 40 H 1.09002 * 110.70392 * 154.03567 * 6 5 4 41 41 H 1.09004 * 109.47243 * 55.60524 * 9 7 3 42 42 H 1.09001 * 109.47169 * 295.60514 * 9 7 3 43 43 H 1.08994 * 110.24897 * 43.95326 * 11 10 9 44 44 H 1.09006 * 110.31509 * 281.99745 * 11 10 9 45 45 H 1.09002 * 109.46888 * 60.00294 * 17 16 14 46 46 H 1.08997 * 109.47438 * 300.00628 * 17 16 14 47 47 H 1.09005 * 109.47207 * 60.00651 * 18 17 16 48 48 H 1.08992 * 109.47760 * 300.00290 * 18 17 16 49 49 H 0.96999 * 120.00019 * 180.02562 * 22 21 19 50 50 H 1.08997 * 110.48525 * 93.86510 * 27 12 11 51 51 H 1.09002 * 110.48488 * 216.50944 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4494 2.1486 1.1303 5 6 2.5673 3.1386 1.5428 6 6 3.8405 2.2759 1.3395 7 6 3.4901 1.4255 0.1003 8 1 3.9106 1.8814 -0.7962 9 6 4.0395 0.0077 0.2696 10 7 5.5040 0.0475 0.2630 11 6 6.3309 0.3017 1.4486 12 6 7.7505 -0.1766 1.0713 13 1 8.5097 0.4719 1.5086 14 6 7.9648 -1.6094 1.4863 15 8 7.0987 -2.2007 2.0864 16 8 9.1181 -2.2288 1.1894 17 6 9.2554 -3.6084 1.6207 18 6 10.6248 -4.1418 1.1952 19 6 10.7672 -5.5739 1.6423 20 1 9.9632 -6.0541 2.1804 21 6 11.9261 -6.2692 1.3698 22 7 12.9053 -5.6845 0.7149 23 14 12.1055 -8.0420 1.9307 24 1 10.8721 -8.4633 2.6421 25 1 12.3191 -8.9159 0.7492 26 1 13.2685 -8.1559 2.8472 27 6 7.7298 -0.0439 -0.4692 28 6 6.2630 -0.1447 -0.8296 29 8 5.8349 -0.3661 -1.9425 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5602 2.6921 0.8109 36 1 1.2101 1.4803 1.9574 37 1 2.5777 4.0104 0.8887 38 1 2.4598 3.4362 2.5859 39 1 4.0172 1.6391 2.2064 40 1 4.7064 2.9076 1.1410 41 1 3.6893 -0.6181 -0.5512 42 1 3.6916 -0.4061 1.2161 43 1 5.9551 -0.2664 2.2994 44 1 6.3411 1.3665 1.6816 45 1 8.4723 -4.2121 1.1621 46 1 9.1659 -3.6605 2.7057 47 1 11.4083 -3.5382 1.6534 48 1 10.7139 -4.0898 0.1101 49 1 13.7205 -6.1738 0.5228 50 1 8.1324 0.9220 -0.7743 51 1 8.2931 -0.8556 -0.9296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785647793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:03 Heat of formation + Delta-G solvation = -118.241350 kcal Electronic energy + Delta-G solvation = -29997.389014 eV Core-core repulsion = 25896.610905 eV Total energy + Delta-G solvation = -4100.778110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27409 -40.05767 -39.27362 -36.76731 -35.95241 -33.84199 -33.60908 -33.32666 -30.53025 -29.98160 -28.92091 -27.92862 -26.13988 -25.09923 -23.63543 -23.52173 -21.54982 -21.03744 -20.44426 -20.21773 -19.14146 -17.91669 -17.30764 -16.74469 -16.44471 -16.25876 -16.05820 -15.80945 -15.58892 -15.06248 -15.03706 -14.51217 -14.22691 -14.11074 -13.77456 -13.65248 -13.34434 -13.04080 -13.02264 -12.70768 -12.62568 -12.39689 -12.38915 -11.99349 -11.86848 -11.77603 -11.63385 -11.53129 -11.39519 -11.29617 -11.16266 -11.08283 -11.04659 -10.82464 -10.72820 -10.30435 -9.95889 -9.73278 -9.68276 -9.32967 -9.16026 -8.50269 -8.48463 -6.14155 -4.18695 2.34364 2.42146 2.65272 2.94327 3.25116 3.32798 3.37457 3.61064 3.99302 4.06487 4.20023 4.28009 4.35048 4.41241 4.51434 4.70072 4.76355 4.78685 4.83259 4.95834 5.00241 5.07709 5.13763 5.15589 5.20513 5.22635 5.28658 5.33636 5.41047 5.47354 5.48929 5.50974 5.55224 5.61945 5.64797 5.73821 5.81139 5.88295 5.99741 6.01308 6.23819 6.56323 6.60514 6.68473 6.85342 6.88017 7.50061 7.56750 7.81226 7.98449 8.05055 8.19404 8.86870 9.46044 10.97300 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.002055 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.383333 B =13620.522841 C =14000.070558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.034 3.966 3 N -0.520 5.520 4 C 0.041 3.959 5 C -0.130 4.130 6 C -0.137 4.137 7 C 0.058 3.942 8 H 0.091 0.909 9 C 0.112 3.888 10 N -0.612 5.612 11 C 0.113 3.887 12 C -0.099 4.099 13 H 0.137 0.863 14 C 0.462 3.538 15 O -0.511 6.511 16 O -0.352 6.352 17 C 0.076 3.924 18 C 0.024 3.976 19 C -0.527 4.527 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.145 4.145 28 C 0.517 3.483 29 O -0.525 6.525 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.029 0.971 48 H 0.029 0.971 49 H 0.263 0.737 50 H 0.121 0.879 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.402 20.343 2.386 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.093 4.093 3 N -0.245 5.245 4 C -0.087 4.087 5 C -0.168 4.168 6 C -0.175 4.175 7 C -0.051 4.051 8 H 0.109 0.891 9 C -0.010 4.010 10 N -0.347 5.347 11 C -0.010 4.010 12 C -0.119 4.119 13 H 0.154 0.846 14 C 0.304 3.696 15 O -0.400 6.400 16 O -0.268 6.268 17 C 0.003 3.997 18 C -0.013 4.013 19 C -0.565 4.565 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.185 4.185 28 C 0.305 3.695 29 O -0.400 6.400 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.073 0.927 50 H 0.139 0.861 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.931 20.164 1.426 29.099 hybrid contribution 0.446 -1.500 1.227 1.989 sum -20.484 18.664 2.653 27.839 Atomic orbital electron populations 1.21843 0.94736 1.01922 1.02384 1.22398 0.96129 0.89504 1.01317 1.63847 1.04989 1.12863 1.42803 1.23083 0.98133 0.95556 0.91905 1.22711 0.94283 0.98276 1.01576 1.22914 0.98556 0.98429 0.97607 1.22879 0.87861 0.95346 0.99054 0.89138 1.22079 0.78244 0.97257 1.03452 1.48118 1.05862 1.71117 1.09591 1.22126 0.88216 1.01304 0.89403 1.21962 0.99520 0.92664 0.97757 0.84570 1.23062 0.80806 0.89200 0.76550 1.90634 1.43973 1.66953 1.38431 1.86510 1.36571 1.31131 1.72551 1.23696 1.02291 0.74642 0.99053 1.19181 0.88389 0.95572 0.98140 1.20998 1.01750 0.96315 1.37429 0.92238 1.24985 0.95607 0.98652 0.94925 1.69977 1.05939 1.37055 1.39752 0.86416 0.78192 0.84202 0.78510 1.19612 1.20783 1.20808 1.22396 0.95283 1.07086 0.93717 1.20908 0.89103 0.75375 0.84108 1.90742 1.78503 1.48618 1.22166 0.91810 0.92088 0.92709 0.90082 0.94182 0.90152 0.93442 0.90614 0.90751 0.91182 0.90577 0.88971 0.90288 0.88482 0.89632 0.92291 0.92189 0.95294 0.95263 0.92716 0.86105 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.71 37.16 0.36 -0.66 16 2 C 0.03 0.28 4.45 -3.82 -0.02 0.26 16 3 N -0.52 -4.44 5.27 -223.35 -1.18 -5.62 16 4 C 0.04 0.28 5.34 -2.29 -0.01 0.26 16 5 C -0.13 -0.78 7.08 -24.59 -0.17 -0.95 16 6 C -0.14 -0.90 5.09 -24.91 -0.13 -1.03 16 7 C 0.06 0.50 3.68 -66.73 -0.25 0.26 16 8 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 9 C 0.11 1.11 4.04 -4.04 -0.02 1.10 16 10 N -0.61 -6.61 2.85 -172.37 -0.49 -7.10 16 11 C 0.11 0.98 5.75 -3.13 -0.02 0.96 16 12 C -0.10 -1.00 3.65 -90.14 -0.33 -1.33 16 13 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 14 C 0.46 7.22 7.22 36.01 0.26 7.48 16 15 O -0.51 -9.22 15.26 -18.75 -0.29 -9.51 16 16 O -0.35 -6.55 10.11 -39.27 -0.40 -6.94 16 17 C 0.08 1.63 5.40 37.16 0.20 1.83 16 18 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 19 C -0.53 -14.65 9.11 -34.44 -0.31 -14.97 16 20 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 23 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.14 -1.52 6.41 -26.69 -0.17 -1.70 16 28 C 0.52 6.85 8.02 -10.81 -0.09 6.77 16 29 O -0.52 -8.97 17.54 5.56 0.10 -8.88 16 30 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.34 6.79 -51.93 -0.35 -0.01 16 33 H 0.08 0.73 6.89 -51.93 -0.36 0.37 16 34 H 0.04 0.32 6.36 -51.93 -0.33 -0.01 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.31 7.37 -51.93 -0.38 -0.07 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.45 7.41 -51.93 -0.38 0.06 16 40 H 0.08 0.46 7.95 -51.93 -0.41 0.05 16 41 H 0.09 1.07 6.12 -51.93 -0.32 0.75 16 42 H 0.08 0.72 6.83 -51.93 -0.35 0.37 16 43 H 0.10 0.95 6.98 -51.93 -0.36 0.58 16 44 H 0.09 0.48 7.26 -51.93 -0.38 0.10 16 45 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 46 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 47 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.12 1.44 7.81 -51.93 -0.41 1.04 16 LS Contribution 402.47 15.07 6.07 6.07 Total: -1.00 -33.62 402.47 -10.06 -43.68 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -8.65 Total: -2.96 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -0.94 Total: 0.36 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.93 Total: -38.06 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.59 Total: -25.33 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.62 -10.06 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785647793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.561 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds