Wall clock time and date at job start Tue Mar 31 2020 22:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47266 * 2 1 4 4 C 1.47847 * 110.99978 * 54.97410 * 3 2 1 5 5 C 1.54912 * 104.79147 * 146.36682 * 4 3 2 6 6 C 1.55138 * 101.65316 * 322.93003 * 5 4 3 7 7 C 1.47439 * 110.99906 * 175.82246 * 3 2 1 8 8 H 1.09004 * 109.89118 * 117.17418 * 7 3 2 9 9 C 1.52993 * 109.89055 * 356.14415 * 7 3 2 10 10 N 1.46502 * 109.47081 * 175.60628 * 9 7 3 11 11 C 1.46759 * 124.35151 * 85.81365 * 10 9 7 12 12 C 1.54478 * 105.47671 * 162.96384 * 11 10 9 13 13 H 1.09001 * 110.97127 * 143.57019 * 12 11 10 14 14 C 1.50704 * 110.96436 * 267.29359 * 12 11 10 15 15 O 1.20825 * 120.00439 * 356.90907 * 14 12 11 16 16 O 1.34234 * 119.99971 * 176.91012 * 14 12 11 17 17 C 1.45193 * 117.00186 * 179.97438 * 16 14 12 18 18 C 1.52995 * 109.47111 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47328 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99545 * 359.72892 * 19 18 17 21 21 C 1.37872 * 120.00216 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00068 * 359.72373 * 21 19 18 23 23 Si 1.86804 * 119.99952 * 179.72696 * 21 19 18 24 24 H 1.48495 * 109.47084 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47481 * 119.99895 * 23 21 19 26 26 H 1.48504 * 109.46843 * 239.99591 * 23 21 19 27 27 C 1.54628 * 101.79961 * 25.42861 * 12 11 10 28 28 C 1.34420 * 124.34870 * 265.78134 * 10 9 7 29 29 O 1.21280 * 124.93953 * 0.46197 * 28 10 9 30 30 H 1.09010 * 109.46597 * 60.00384 * 1 2 3 31 31 H 1.08997 * 109.47534 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47575 * 300.00671 * 1 2 3 33 33 H 1.08998 * 109.47211 * 239.99525 * 2 1 3 34 34 H 1.09004 * 109.46928 * 119.99334 * 2 1 3 35 35 H 1.09002 * 110.37402 * 265.19353 * 4 3 2 36 36 H 1.08994 * 110.37186 * 27.53744 * 4 3 2 37 37 H 1.08998 * 110.98845 * 81.02388 * 5 4 3 38 38 H 1.09002 * 110.98787 * 204.84089 * 5 4 3 39 39 H 1.09004 * 110.70748 * 277.27237 * 6 5 4 40 40 H 1.09002 * 110.70392 * 154.03567 * 6 5 4 41 41 H 1.09004 * 109.47243 * 55.60524 * 9 7 3 42 42 H 1.09001 * 109.47169 * 295.60514 * 9 7 3 43 43 H 1.08994 * 110.24897 * 43.95326 * 11 10 9 44 44 H 1.09006 * 110.31509 * 281.99745 * 11 10 9 45 45 H 1.09002 * 109.46888 * 60.00294 * 17 16 14 46 46 H 1.08997 * 109.47438 * 300.00628 * 17 16 14 47 47 H 1.09005 * 109.47207 * 60.00651 * 18 17 16 48 48 H 1.08992 * 109.47760 * 300.00290 * 18 17 16 49 49 H 0.96999 * 120.00019 * 180.02562 * 22 21 19 50 50 H 1.08997 * 110.48525 * 93.86510 * 27 12 11 51 51 H 1.09002 * 110.48488 * 216.50944 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4494 2.1486 1.1303 5 6 2.5673 3.1386 1.5428 6 6 3.8405 2.2759 1.3395 7 6 3.4901 1.4255 0.1003 8 1 3.9106 1.8814 -0.7962 9 6 4.0395 0.0077 0.2696 10 7 5.5040 0.0475 0.2630 11 6 6.3309 0.3017 1.4486 12 6 7.7505 -0.1766 1.0713 13 1 8.5097 0.4719 1.5086 14 6 7.9648 -1.6094 1.4863 15 8 7.0987 -2.2007 2.0864 16 8 9.1181 -2.2288 1.1894 17 6 9.2554 -3.6084 1.6207 18 6 10.6248 -4.1418 1.1952 19 6 10.7672 -5.5739 1.6423 20 1 9.9632 -6.0541 2.1804 21 6 11.9261 -6.2692 1.3698 22 7 12.9053 -5.6845 0.7149 23 14 12.1055 -8.0420 1.9307 24 1 10.8721 -8.4633 2.6421 25 1 12.3191 -8.9159 0.7492 26 1 13.2685 -8.1559 2.8472 27 6 7.7298 -0.0439 -0.4692 28 6 6.2630 -0.1447 -0.8296 29 8 5.8349 -0.3661 -1.9425 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5602 2.6921 0.8109 36 1 1.2101 1.4803 1.9574 37 1 2.5777 4.0104 0.8887 38 1 2.4598 3.4362 2.5859 39 1 4.0172 1.6391 2.2064 40 1 4.7064 2.9076 1.1410 41 1 3.6893 -0.6181 -0.5512 42 1 3.6916 -0.4061 1.2161 43 1 5.9551 -0.2664 2.2994 44 1 6.3411 1.3665 1.6816 45 1 8.4723 -4.2121 1.1621 46 1 9.1659 -3.6605 2.7057 47 1 11.4083 -3.5382 1.6534 48 1 10.7139 -4.0898 0.1101 49 1 13.7205 -6.1738 0.5228 50 1 8.1324 0.9220 -0.7743 51 1 8.2931 -0.8556 -0.9296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785647793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:03 Heat of formation + Delta-G solvation = -139.851549 kcal Electronic energy + Delta-G solvation = -29998.326103 eV Core-core repulsion = 25896.610905 eV Total energy + Delta-G solvation = -4101.715198 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.28446 -41.10231 -40.17998 -38.04689 -37.20973 -35.47849 -34.55611 -34.22128 -32.35101 -30.85747 -29.54228 -28.78674 -27.44349 -26.45670 -24.71562 -24.21876 -22.94509 -22.12866 -21.43081 -21.14281 -19.98186 -19.16205 -18.42529 -18.11117 -17.76508 -17.56411 -17.04261 -16.80233 -16.58273 -16.37694 -16.04312 -15.71769 -15.22038 -14.89885 -14.87872 -14.56757 -14.50099 -14.34487 -14.03124 -13.84586 -13.45011 -13.27873 -13.21500 -13.18799 -13.07015 -12.90432 -12.65864 -12.61145 -12.50115 -12.45481 -12.23611 -12.08241 -11.99809 -11.85078 -11.76237 -11.60347 -11.52513 -11.50193 -11.30537 -10.98546 -10.63213 -9.98291 -9.19551 -8.28740 -6.41653 1.08998 1.39079 1.40116 1.41516 1.53041 1.65700 1.86366 2.38301 2.98665 3.05783 3.14031 3.22143 3.55819 3.57156 3.71108 3.75577 3.80092 4.02027 4.13946 4.18925 4.20353 4.22796 4.30794 4.32622 4.34360 4.48687 4.53049 4.58352 4.61106 4.66517 4.67944 4.77133 4.78866 4.87832 4.92217 4.97115 5.00100 5.09163 5.15426 5.25076 5.26523 5.30932 5.43971 5.45666 5.53545 5.73131 5.94078 6.01731 6.04998 6.06640 6.65654 6.72703 7.00454 7.28152 8.83851 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.002055 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.383333 B =13620.522841 C =14000.070558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.035 3.965 3 N -0.535 5.535 4 C 0.039 3.961 5 C -0.125 4.125 6 C -0.132 4.132 7 C 0.064 3.936 8 H 0.067 0.933 9 C 0.114 3.886 10 N -0.609 5.609 11 C 0.114 3.886 12 C -0.086 4.086 13 H 0.185 0.815 14 C 0.455 3.545 15 O -0.537 6.537 16 O -0.360 6.360 17 C 0.092 3.908 18 C 0.030 3.970 19 C -0.550 4.550 20 H 0.063 0.937 21 C 0.006 3.994 22 N -0.925 5.925 23 Si 0.972 3.028 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.273 1.273 27 C -0.139 4.139 28 C 0.504 3.496 29 O -0.577 6.577 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.133 0.867 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.011 0.989 48 H 0.004 0.996 49 H 0.268 0.732 50 H 0.162 0.838 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.809 21.794 4.429 30.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.092 4.092 3 N -0.260 5.260 4 C -0.088 4.088 5 C -0.163 4.163 6 C -0.170 4.170 7 C -0.045 4.045 8 H 0.086 0.914 9 C -0.009 4.009 10 N -0.342 5.342 11 C -0.008 4.008 12 C -0.105 4.105 13 H 0.202 0.798 14 C 0.300 3.700 15 O -0.427 6.427 16 O -0.276 6.276 17 C 0.019 3.981 18 C -0.007 4.007 19 C -0.588 4.588 20 H 0.081 0.919 21 C -0.193 4.193 22 N -0.564 5.564 23 Si 0.796 3.204 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.199 1.199 27 C -0.178 4.178 28 C 0.293 3.707 29 O -0.457 6.457 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.151 0.849 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.030 0.970 48 H 0.023 0.977 49 H 0.077 0.923 50 H 0.180 0.820 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.358 21.643 3.511 30.609 hybrid contribution 0.499 -1.904 0.571 2.050 sum -20.859 19.739 4.082 29.007 Atomic orbital electron populations 1.21803 0.93617 1.02369 1.02556 1.22352 0.97034 0.89387 1.00471 1.63808 1.05003 1.13094 1.44125 1.23149 0.98604 0.95666 0.91391 1.22708 0.93307 0.97733 1.02573 1.22906 0.99365 0.98300 0.96429 1.22722 0.87948 0.94456 0.99370 0.91442 1.22072 0.78000 0.98000 1.02796 1.48261 1.06300 1.69840 1.09793 1.22405 0.86590 1.03873 0.87925 1.22213 1.01849 0.89040 0.97419 0.79818 1.24251 0.79206 0.91030 0.75542 1.90625 1.44362 1.68017 1.39677 1.86499 1.38635 1.29449 1.72990 1.23131 0.99517 0.76541 0.98941 1.18979 0.90290 0.95119 0.96288 1.21393 1.02163 0.97520 1.37696 0.91891 1.25945 0.95166 1.03392 0.94796 1.70090 1.06568 1.39040 1.40698 0.85298 0.78547 0.78361 0.78233 1.18742 1.20214 1.19868 1.22435 0.93094 1.08522 0.93774 1.21454 0.90572 0.74804 0.83861 1.90709 1.79538 1.51177 1.24272 0.92360 0.91537 0.91719 0.91944 0.94075 0.89821 0.92946 0.90767 0.89000 0.90361 0.89391 0.91603 0.89377 0.89034 0.84925 0.93030 0.91786 0.97017 0.97709 0.92317 0.82028 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.71 71.98 0.70 -1.22 16 2 C 0.04 0.58 4.45 86.30 0.38 0.97 16 3 N -0.54 -8.90 5.27 -860.53 -4.54 -13.44 16 4 C 0.04 0.46 5.34 86.77 0.46 0.92 16 5 C -0.13 -1.15 7.08 31.98 0.23 -0.93 16 6 C -0.13 -1.37 5.09 31.78 0.16 -1.20 16 7 C 0.06 1.07 3.68 45.26 0.17 1.24 16 8 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 9 C 0.11 2.25 4.04 86.38 0.35 2.60 16 10 N -0.61 -12.47 2.85 -817.86 -2.33 -14.80 16 11 C 0.11 1.61 5.75 86.83 0.50 2.11 16 12 C -0.09 -1.47 3.65 -10.48 -0.04 -1.51 16 13 H 0.18 1.50 8.14 -2.39 -0.02 1.49 16 14 C 0.46 13.69 7.22 71.24 0.51 14.20 16 15 O -0.54 -18.99 15.26 21.97 0.34 -18.66 16 16 O -0.36 -13.31 10.11 -51.45 -0.52 -13.83 16 17 C 0.09 4.02 5.40 71.98 0.39 4.41 16 18 C 0.03 1.61 5.35 29.85 0.16 1.77 16 19 C -0.55 -31.00 9.11 25.60 0.23 -30.77 16 20 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 21 C 0.01 0.35 5.46 84.65 0.46 0.81 16 22 N -0.92 -54.96 13.29 21.45 0.28 -54.68 16 23 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 C -0.14 -2.66 6.41 30.62 0.20 -2.46 16 28 C 0.50 13.26 8.02 87.93 0.71 13.97 16 29 O -0.58 -20.67 17.54 -3.03 -0.05 -20.72 16 30 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.72 6.79 -2.38 -0.02 0.70 16 33 H 0.06 1.24 6.89 -2.39 -0.02 1.22 16 34 H 0.04 0.65 6.36 -2.39 -0.02 0.64 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 0.57 7.37 -2.39 -0.02 0.56 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.08 0.72 7.41 -2.38 -0.02 0.70 16 40 H 0.09 0.73 7.95 -2.39 -0.02 0.71 16 41 H 0.07 1.65 6.12 -2.39 -0.01 1.64 16 42 H 0.09 1.56 6.83 -2.39 -0.02 1.54 16 43 H 0.09 1.51 6.98 -2.39 -0.02 1.49 16 44 H 0.13 0.76 7.26 -2.38 -0.02 0.75 16 45 H 0.05 2.30 8.13 -2.39 -0.02 2.28 16 46 H 0.06 2.72 8.13 -2.39 -0.02 2.71 16 47 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 48 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 49 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 50 H 0.16 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.10 2.36 7.81 -2.39 -0.02 2.34 16 Total: -1.00 -76.49 402.47 1.69 -74.80 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.91 Total: 10.88 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.57 Total: 4.90 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -6.58 Total: -82.91 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.24 Total: -53.20 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -76.49 1.69 -74.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785647793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.052 kcal (2) G-P(sol) polarization free energy of solvation -76.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds