Wall clock time and date at job start Tue Mar 31 2020 22:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47200 * 2 1 4 4 C 1.48537 * 111.00417 * 55.81709 * 3 2 1 5 5 C 1.54931 * 103.22681 * 159.72104 * 4 3 2 6 6 C 1.54598 * 102.92493 * 322.58656 * 5 4 3 7 7 C 1.47901 * 111.00092 * 173.21903 * 3 2 1 8 8 H 1.08999 * 110.07710 * 333.59404 * 7 3 2 9 9 C 1.52993 * 109.92111 * 94.79790 * 7 3 2 10 10 N 1.46498 * 109.47440 * 301.28296 * 9 7 3 11 11 C 1.46758 * 124.35018 * 275.70071 * 10 9 7 12 12 C 1.54480 * 105.47408 * 197.01450 * 11 10 9 13 13 H 1.09004 * 110.96988 * 216.46244 * 12 11 10 14 14 C 1.50702 * 110.96961 * 92.73902 * 12 11 10 15 15 O 1.20822 * 120.00150 * 327.95981 * 14 12 11 16 16 O 1.34230 * 119.99975 * 147.95816 * 14 12 11 17 17 C 1.45197 * 116.99894 * 180.02562 * 16 14 12 18 18 C 1.53005 * 109.47121 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.47297 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99569 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00237 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99887 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00240 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47246 * 90.00096 * 23 21 19 25 25 H 1.48504 * 109.47023 * 210.00025 * 23 21 19 26 26 H 1.48493 * 109.46913 * 329.99685 * 23 21 19 27 27 C 1.54619 * 101.76470 * 334.58177 * 12 11 10 28 28 C 1.34423 * 124.34796 * 95.39508 * 10 9 7 29 29 O 1.21276 * 124.94389 * 359.58124 * 28 10 9 30 30 H 1.09003 * 109.47102 * 296.93400 * 1 2 3 31 31 H 1.09001 * 109.47309 * 56.93618 * 1 2 3 32 32 H 1.09000 * 109.47222 * 176.93810 * 1 2 3 33 33 H 1.08998 * 109.46762 * 239.99883 * 2 1 3 34 34 H 1.09001 * 109.47072 * 120.00097 * 2 1 3 35 35 H 1.08996 * 110.66229 * 41.28801 * 4 3 2 36 36 H 1.09001 * 110.66784 * 278.15930 * 4 3 2 37 37 H 1.09005 * 110.72300 * 204.23027 * 5 4 3 38 38 H 1.09004 * 110.72628 * 80.94485 * 5 4 3 39 39 H 1.08993 * 110.30871 * 263.04314 * 6 5 4 40 40 H 1.09000 * 110.39139 * 140.91654 * 6 5 4 41 41 H 1.09005 * 109.47323 * 61.28393 * 9 7 3 42 42 H 1.08998 * 109.47498 * 181.27726 * 9 7 3 43 43 H 1.09000 * 110.24730 * 316.01315 * 11 10 9 44 44 H 1.08999 * 110.24621 * 78.01302 * 11 10 9 45 45 H 1.09003 * 109.46890 * 299.99527 * 17 16 14 46 46 H 1.08993 * 109.47647 * 60.00092 * 17 16 14 47 47 H 1.09002 * 109.46866 * 299.99979 * 18 17 16 48 48 H 1.09005 * 109.47195 * 59.99736 * 18 17 16 49 49 H 0.96996 * 120.00111 * 179.97438 * 22 21 19 50 50 H 1.09004 * 110.48994 * 143.47675 * 27 12 11 51 51 H 1.09002 * 110.49194 * 265.98642 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4626 2.1466 1.1471 5 6 2.4463 3.3344 1.2951 6 6 3.8162 2.6900 0.9821 7 6 3.4891 1.4276 0.1630 8 1 3.8324 0.5405 0.6952 9 6 4.1636 1.5064 -1.2079 10 7 3.7752 0.3442 -2.0108 11 6 4.4333 -0.9658 -1.9438 12 6 4.0020 -1.7099 -3.2270 13 1 3.8580 -2.7726 -3.0321 14 6 5.0015 -1.4983 -4.3349 15 8 5.6130 -0.4587 -4.4065 16 8 5.2124 -2.4648 -5.2422 17 6 6.1898 -2.1921 -6.2807 18 6 6.2923 -3.3998 -7.2145 19 6 7.3063 -3.1166 -8.2927 20 1 7.8260 -2.1699 -8.3100 21 6 7.5713 -4.0662 -9.2565 22 7 6.9388 -5.2191 -9.2351 23 14 8.8287 -3.7154 -10.5926 24 1 10.1706 -4.1608 -10.1388 25 1 8.4553 -4.4490 -11.8286 26 1 8.8595 -2.2574 -10.8727 27 6 2.6575 -1.0202 -3.5545 28 6 2.7666 0.3391 -2.8994 29 8 2.0502 1.2869 -3.1424 30 1 -0.3633 0.4655 0.9162 31 1 -0.3634 0.5607 -0.8612 32 1 -0.3634 -1.0262 -0.0549 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.4593 1.5352 2.0495 36 1 0.4585 2.5046 0.9200 37 1 2.4277 3.7262 2.3121 38 1 2.2152 4.1187 0.5742 39 1 4.3271 2.4196 1.9061 40 1 4.4318 3.3723 0.3959 41 1 3.8507 2.4192 -1.7149 42 1 5.2461 1.5146 -1.0804 43 1 5.5163 -0.8434 -1.9247 44 1 4.0991 -1.5112 -1.0612 45 1 5.8787 -1.3173 -6.8517 46 1 7.1612 -2.0017 -5.8246 47 1 6.6031 -4.2750 -6.6438 48 1 5.3207 -3.5899 -7.6707 49 1 7.1249 -5.8871 -9.9134 50 1 2.5336 -0.9183 -4.6327 51 1 1.8266 -1.5819 -3.1275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785647796.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:11 Heat of formation + Delta-G solvation = -119.998231 kcal Electronic energy + Delta-G solvation = -30343.590341 eV Core-core repulsion = 26242.736047 eV Total energy + Delta-G solvation = -4100.854294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17079 -39.84020 -38.97406 -36.61987 -35.81518 -34.04594 -33.42540 -33.17744 -30.44035 -29.81415 -28.94823 -27.94607 -26.07833 -25.15126 -23.58890 -23.01151 -21.04922 -20.95999 -20.64461 -20.27004 -19.51145 -17.96322 -17.00512 -16.60981 -16.39455 -16.01338 -15.97463 -15.92658 -15.22956 -15.10905 -14.66541 -14.51324 -14.35384 -13.83761 -13.60427 -13.44476 -13.17218 -13.09698 -12.96796 -12.78278 -12.63609 -12.36364 -12.18981 -11.93706 -11.81829 -11.79061 -11.57207 -11.50323 -11.34460 -11.25850 -11.09137 -11.05946 -10.92870 -10.78799 -10.71022 -10.23855 -9.75453 -9.69013 -9.65362 -9.32960 -8.97194 -8.46883 -8.46090 -6.12953 -4.17419 2.34501 2.66453 2.86572 3.00317 3.26998 3.33332 3.37722 3.61719 4.10153 4.21533 4.28438 4.33250 4.36267 4.55111 4.58261 4.79845 4.81918 4.86449 4.94488 4.99636 5.12870 5.15797 5.17651 5.19224 5.23724 5.26432 5.29577 5.39181 5.45630 5.50685 5.51174 5.56193 5.58033 5.63403 5.70833 5.82183 5.85179 5.96436 6.03272 6.04614 6.40377 6.58975 6.67080 6.80081 6.90640 7.09157 7.51863 7.58368 7.83227 8.10759 8.21369 8.21581 8.87999 9.47196 10.98464 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027966 B = 0.002045 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.990959 B =13688.466547 C =14140.634218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 N -0.499 5.499 4 C 0.036 3.964 5 C -0.123 4.123 6 C -0.124 4.124 7 C 0.048 3.952 8 H 0.054 0.946 9 C 0.146 3.854 10 N -0.611 5.611 11 C 0.119 3.881 12 C -0.100 4.100 13 H 0.130 0.870 14 C 0.460 3.540 15 O -0.506 6.506 16 O -0.353 6.353 17 C 0.075 3.925 18 C 0.025 3.975 19 C -0.527 4.527 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.272 1.272 27 C -0.145 4.145 28 C 0.527 3.473 29 O -0.511 6.511 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.028 0.972 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.028 0.972 48 H 0.029 0.971 49 H 0.263 0.737 50 H 0.108 0.892 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.604 10.420 25.416 29.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.083 4.083 3 N -0.223 5.223 4 C -0.092 4.092 5 C -0.161 4.161 6 C -0.163 4.163 7 C -0.062 4.062 8 H 0.072 0.928 9 C 0.023 3.977 10 N -0.345 5.345 11 C -0.004 4.004 12 C -0.120 4.120 13 H 0.148 0.852 14 C 0.302 3.698 15 O -0.395 6.395 16 O -0.269 6.269 17 C 0.003 3.997 18 C -0.012 4.012 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.185 4.185 28 C 0.314 3.686 29 O -0.385 6.385 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.073 0.927 50 H 0.126 0.874 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.934 11.332 24.639 29.241 hybrid contribution 1.143 -0.447 -0.040 1.228 sum -9.791 10.885 24.599 28.626 Atomic orbital electron populations 1.21818 0.94815 1.01800 1.02445 1.22307 0.96118 0.89440 1.00451 1.64725 1.04281 1.12535 1.40776 1.23215 0.99284 0.94696 0.91996 1.22467 0.94188 0.97881 1.01556 1.22381 0.98002 0.96367 0.99565 1.22859 0.89411 0.97849 0.96081 0.92842 1.21428 0.98095 0.88543 0.89598 1.48000 1.33775 1.11580 1.41138 1.21944 0.99356 0.83467 0.95651 1.21930 0.93790 1.03665 0.92569 0.85218 1.23070 0.81846 0.82187 0.82708 1.90664 1.47408 1.27586 1.73813 1.86526 1.58770 1.43511 1.38108 1.23679 0.88175 1.02102 0.85767 1.19175 0.98295 0.91316 0.92455 1.20969 1.22823 1.01913 1.10801 0.92276 1.24982 0.96366 0.94915 0.97894 1.69970 1.41634 1.06132 1.35055 0.86468 0.81301 0.78517 0.81011 1.20476 1.21026 1.19717 1.22356 0.96584 0.95180 1.04381 1.20474 0.79660 0.89496 0.78955 1.90730 1.44824 1.39185 1.63757 0.92930 0.91446 0.92307 0.90658 0.95352 0.94137 0.90062 0.91173 0.90557 0.91306 0.90531 0.89119 0.90293 0.89463 0.90114 0.92270 0.92248 0.95330 0.95303 0.92687 0.87358 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.58 37.16 0.36 -0.86 16 2 C 0.05 0.39 5.22 -3.83 -0.02 0.37 16 3 N -0.50 -4.69 4.69 -222.58 -1.04 -5.74 16 4 C 0.04 0.28 5.25 -1.90 -0.01 0.27 16 5 C -0.12 -0.82 7.06 -24.87 -0.18 -1.00 16 6 C -0.12 -0.82 6.57 -25.37 -0.17 -0.99 16 7 C 0.05 0.39 2.83 -66.64 -0.19 0.20 16 8 H 0.05 0.41 7.63 -51.93 -0.40 0.02 16 9 C 0.15 1.44 5.44 -4.05 -0.02 1.42 16 10 N -0.61 -6.75 1.96 -172.42 -0.34 -7.09 16 11 C 0.12 1.08 6.30 -3.12 -0.02 1.06 16 12 C -0.10 -1.06 3.65 -90.14 -0.33 -1.39 16 13 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 14 C 0.46 7.38 6.90 36.01 0.25 7.63 16 15 O -0.51 -9.51 16.04 -18.75 -0.30 -9.81 16 16 O -0.35 -6.65 10.22 -39.26 -0.40 -7.05 16 17 C 0.08 1.63 5.40 37.16 0.20 1.83 16 18 C 0.02 0.63 5.35 -27.88 -0.15 0.49 16 19 C -0.53 -14.68 9.11 -34.44 -0.31 -15.00 16 20 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 23 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 C -0.14 -1.57 6.35 -26.74 -0.17 -1.74 16 28 C 0.53 7.06 5.80 -10.85 -0.06 6.99 16 29 O -0.51 -8.72 17.52 5.56 0.10 -8.62 16 30 H 0.05 0.38 7.02 -51.93 -0.36 0.01 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.70 5.05 -51.93 -0.26 0.44 16 34 H 0.03 0.22 7.91 -51.93 -0.41 -0.19 16 35 H 0.04 0.29 8.02 -51.93 -0.42 -0.13 16 36 H 0.08 0.64 7.72 -51.93 -0.40 0.24 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.49 7.69 -51.93 -0.40 0.09 16 41 H 0.09 1.09 7.82 -51.93 -0.41 0.68 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.84 7.66 -51.93 -0.40 0.44 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 46 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 47 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 50 H 0.11 1.32 7.90 -51.93 -0.41 0.91 16 51 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 407.16 15.07 6.14 6.14 Total: -1.00 -33.97 407.16 -9.96 -43.92 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -8.90 Total: -3.56 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.92 Total: 0.90 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.65 Total: -38.17 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.60 Total: -25.49 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.97 -9.96 -43.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785647796.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.074 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds